View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12372_low_1 (Length: 479)
Name: NF12372_low_1
Description: NF12372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12372_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Complemental strand, 54791540 - 54791084
Alignment:
| Q |
19 |
ccctccacaattataatcatcttcacgtgcaacccatccataaatgtctgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgttta |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791540 |
ccctccacaattataatcatcttcacgtgcaacccatccataaatgtctgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgttta |
54791441 |
T |
|
| Q |
119 |
gtttcaaaggatttctcaaattcacttgcattcatgaaaccattccagtcattgttgaagtctactacagcctgattgtcaccatccatgaagaatacat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
54791440 |
gtttcaaaggatttctcaaattcacttgcattcatgaaaccattccagtcattgttgaagtctactacagcctgagtgtcaccatccatgaagaatacat |
54791341 |
T |
|
| Q |
219 |
ggacatccaatggtctgtacttggcaaattcctttagccagtatccagcatcgttaaagttgctcttaatgttaacgattatgcctgtccatggccagac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791340 |
ggacatccaatggtctgtacttggcaaattcctttagccagtatccagaatcgttaaagttgctcttaatgttaacgattatgcctgtccatggccagac |
54791241 |
T |
|
| Q |
319 |
ataattctcaacctgcggtgcaggttggttgacagcttcggccaaagccgggggaggtatttggtctgcttcatttactaggtcagtctccaaatacttt |
418 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
54791240 |
ataattctcaacctgcggtacaggttggttgacagcttcggccaaagccgggggaggtatttggtctgcttcatttactaggtcggtctccaaatacttt |
54791141 |
T |
|
| Q |
419 |
gccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgctt |
475 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791140 |
gccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgctt |
54791084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Original strand, 54777606 - 54778061
Alignment:
| Q |
19 |
ccctccacaattataatcatcttcacgtgcaacccatccataaatgtctgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgttta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| |
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| T |
54777606 |
ccctccacaattataatcatcttcacgtgcaacccatccataaatgtctgaactggccagcatgtccattgaattccattccttcttcccatgatgttta |
54777705 |
T |
|
| Q |
119 |
gtttcaaaggatttctcaaattcacttgcattcatgaaaccattccagtcattgttgaagtctactacagcctgattgtcaccatccatgaagaatacat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
54777706 |
gtttcaaaggatttctcaaattcacttgcattcttgaaaccattccagtcattgttgaagtctactacagcctgagtgtcaccatccatgaagaatacat |
54777805 |
T |
|
| Q |
219 |
ggacatccaatggtctgtacttggcaaattcctttagccagtatccagcatcgttaaagttgctcttaatgttaacgattatgcctgtccatggccagac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||| || |
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| T |
54777806 |
ggacatccaatggtctgtacttggcaaattcctttagccagtatccagaatcgttaaggttgctcttaatgttaacgattatacctgtccatggcca-ac |
54777904 |
T |
|
| Q |
319 |
ataattctcaacctgcggtgcaggttggttgacagcttcggccaaagccgggggaggtatttggtctgcttcatttactaggtcagtctccaaatacttt |
418 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
54777905 |
ataattctcaacctgcggtacaggttggttgacagcttcggccaaagccgggggaggtatttggtctgcttcatttactaggtcggtctccaaatacttt |
54778004 |
T |
|
| Q |
419 |
gccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgctt |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54778005 |
gccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgctt |
54778061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Complemental strand, 52284198 - 52283742
Alignment:
| Q |
19 |
ccctccacaattataatcatcttcacgtgcaacccatccataaatgtctgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgttta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52284198 |
ccctccacaattataatcatcttcacgtgcaacccatccataaatgtctgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgttta |
52284099 |
T |
|
| Q |
119 |
gtttcaaaggatttctcaaattcacttgcattcatgaaaccattccagtcattgttgaagtctactacagcctgattgtcaccatccatgaagaatacat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
52284098 |
gtttcaaaggatttctcaaattcacttgcattcatgaaaccattccagtcattgttgaagtctactacagcctgagtgtcaccatccatgaagaatacat |
52283999 |
T |
|
| Q |
219 |
ggacatccaatggtctgtacttggcaaattcctttagccagtatccagcatcgttaaagttgctcttaatgttaacgattatgcctgtccatggccagac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| || | ||||||||||| ||||| ||||||||||||||||||||||| |
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|
| T |
52283998 |
ggacatccaatggtctgtacttggcaaattcctttagccagtatccagaatcattcagtttgctcttaatattaacaattatgcctgtccatggccagac |
52283899 |
T |
|
| Q |
319 |
ataattctcaacctgcggtgcaggttggttgacagcttcggccaaagccgggggaggtatttggtctgcttcatttactaggtcagtctccaaatacttt |
418 |
Q |
| |
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||| ||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
52283898 |
atagttctcaacctgtggtgcaggttggttgacagcttcggtcaaaggcgggggaggtatttggtctgcttcatttgctaggtcagtctccaaaaacttt |
52283799 |
T |
|
| Q |
419 |
gccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgctt |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52283798 |
gccagagcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgctt |
52283742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 25 - 473
Target Start/End: Complemental strand, 799462 - 799020
Alignment:
| Q |
25 |
acaattataatcatcttcacgtgcaacccatccataaatgtctgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgtttagtttca |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| ||||||||| |||||| |||| | |||||||| ||||| || ||| || ||||||| ||| |
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|
| T |
799462 |
acaattataatcatcttcacgtgcaacccaaccgtaaatctctgaactgtcctgcaagtccatggaattccaatccttttttccacgacgtttagtctca |
799363 |
T |
|
| Q |
125 |
aaggatttctcaaattcacttgcattcatgaaaccattccagtcattgttgaagtctactacagcctgattgtcaccatccatgaagaatacatggacat |
224 |
Q |
| |
|
||| ||||||||| |||||||||||||| || ||||||||||||||||||||||||| |||||| || ||||||||| ||||| ||| ||| |
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|
| T |
799362 |
aagcatttctcaagctcacttgcattcataaacccattccagtcattgttgaagtctataacagccacggagttaccatccatcaagaacgtatgaacag |
799263 |
T |
|
| Q |
225 |
ccaatggtctgtacttggcaaattcctttagccagtatccagcatcgttaaagttgctcttaatgttaacgattatgcctgtccatggccagacataatt |
324 |
Q |
| |
|
|||| ||| ||||||| |||||||||||| || ||||||||| ||| | | |||| | ||||| || | |||||||||||| ||||| || || || |
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|
| T |
799262 |
ccaacggtttgtacttagcaaattccttttgcaagtatccagaatcatgtgatttgc---ttatgttgacaagtatgcctgtccacggccaaacgtagtt |
799166 |
T |
|
| Q |
325 |
ctcaacctgcggtgcaggttggttgacagcttcggccaaagccgggggaggtatttggtctgcttcatttactaggtcagtctccaaatactttgccaga |
424 |
Q |
| |
|
|||||| | | |||||||| |||||| | | |||||||||| |||||| |||||||||||||||| ||| ||||||| |||| ||||||||||| |
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|
| T |
799165 |
ctcaactt---ggacaggttggacaacagctacagtcaaagccgggcgaggtacttggtctgcttcatttgctaagtcagtcctcaaaaactttgccaga |
799069 |
T |
|
| Q |
425 |
gcgaggtggtttgccttttgtttggcgtttctgtttgctgaacctttgc |
473 |
Q |
| |
|
|| ||||||||||| ||||| || | | |||||||||| |||||||||| |
|
|
| T |
799068 |
gccaggtggtttgctttttgctttgtgcttctgtttgccgaacctttgc |
799020 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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