View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12372_low_3 (Length: 426)
Name: NF12372_low_3
Description: NF12372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12372_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 181 - 409
Target Start/End: Original strand, 27301729 - 27301956
Alignment:
| Q |
181 |
taaacaatcgataacttttatatnnnnnnnnttatttttgatgttttaatgtgttgaacatacaaaatttatttttaaatttcttatcaaattttataaa |
280 |
Q |
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| T |
27301729 |
taaacaatcgataatttttatatagaaaaaattatttttgatgttttaatgtgttgaacatacaaa-tttatttttaaatttcttatcaagttttataaa |
27301827 |
T |
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| Q |
281 |
gacgtttgttagtatttttataaagtaatgctatcacatatactaatacatattcattgtgggcttttcaaattgtgcctaaaaccacttcaatattttt |
380 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27301828 |
gacgtttgttagtatttttataaagtaatgttatcacatatactaatacatattcattgtgggcttttcaaattgtgcctaaaaccacttcaatattttt |
27301927 |
T |
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| Q |
381 |
ggaaattgctctatgccctcttagttttg |
409 |
Q |
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| T |
27301928 |
ggaaattgctctatgccttcttagttttg |
27301956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 27300824 - 27300996
Alignment:
| Q |
11 |
gaacctgtggacatgttaaatccattagccaataatgagtcagactcaatatggatcaactgaaaccgcaggatagacctgttaagacttaagatagact |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27300824 |
gaacttgtggacatgttaaatccattagccaataatgagtcagactcaatatggatcaactgaaaccgcaggatagacctgttaagacttaagatagact |
27300923 |
T |
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| Q |
111 |
aaaactcatcatgaagcactagatgcctagcttaaagaataaaaatgcatcaataaagtaagtgtgttgataa |
183 |
Q |
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| T |
27300924 |
aaaactcatcatgaagcactagatgcctagcttaaaaaataaaaatgcatcaataaagtaagtgtcttgataa |
27300996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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