View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12372_low_6 (Length: 253)
Name: NF12372_low_6
Description: NF12372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12372_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 20373646 - 20373866
Alignment:
| Q |
15 |
cagagaaaaaacacaaacaaactactaaacaccaatgcaaactgcagccactggaagctcacaccatacacgaaagaggagctgataaacgttaaactgt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20373646 |
cagagaaaaaacacaaacaaactactaaacaccaatgcaaactgcagccactggaagctcacaccatacacgaaagaggagctgataaacgttaaactgt |
20373745 |
T |
|
| Q |
115 |
gctgcaacaactttcaaccgtgctgccatgaatacaaccctacaccacaggtaacatgagggctatgttattgaagattagattctaatcaacatataaa |
214 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20373746 |
gctgcaacaattttcaaccgtgctgccatgaatacaaccctacaccacaggtaacatgagggctatgttattaaagattagattctaatcaacatataaa |
20373845 |
T |
|
| Q |
215 |
taatgagtaataattcttgct |
235 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
20373846 |
taatgagtaataattcttgct |
20373866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 20423626 - 20423459
Alignment:
| Q |
33 |
aaactactaaacaccaatgcaaactgcagccactggaagctcacaccatacacgaaagaggagctgataaacgttaaactgtgctgcaacaactttcaac |
132 |
Q |
| |
|
||||||| || |||||| || || ||| ||||| |||| |||||||||||||||| || ||||||| || | || | ||| |||||||||||||||| |
|
|
| T |
20423626 |
aaactaccaagcaccaaagcccaccgcatccactagaaggtcacaccatacacgaacgacgagctgacaa-cattgatttgttctgcaacaactttcaat |
20423528 |
T |
|
| Q |
133 |
cgtgctgccatgaatacaaccctacaccacaggtaacatgagggctatgttattgaagattagattcta |
201 |
Q |
| |
|
||||||| ||||||||||| |||||| ||||||||| ||||||||| ||||||| |||||||||||||| |
|
|
| T |
20423527 |
cgtgctgacatgaatacaaacctacatcacaggtaaaatgagggctgtgttattaaagattagattcta |
20423459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 20339771 - 20339679
Alignment:
| Q |
102 |
aacgttaaactgtgctgcaacaactttcaaccgtgctgccatgaatacaaccctacaccacaggtaacat--gagggctatgttattgaagat |
192 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||||||||||| | ||||||||||||||||| ||||||||| ||||||||||||||| ||||| |
|
|
| T |
20339771 |
aacgttgaactgggctgcaacaaccttcaaccgtgctgccctcaatacaaccctacaccaaaggtaacatacgagggctatgttattaaagat |
20339679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 201
Target Start/End: Complemental strand, 20442680 - 20442526
Alignment:
| Q |
44 |
caccaatgcaaactgcagccactggaagctcacaccatacacgaaagaggagctgataaacgttaaactgtgctgcaacaactttcaaccgtgctgccat |
143 |
Q |
| |
|
|||||| |||||| |||||||||||||| ||||||||||| ||| || ||||||| || | || | ||| ||| ||||||||| ||||||||| ||| |
|
|
| T |
20442680 |
caccaacgcaaaccgcagccactggaaggtcacaccatac--gaacgacgagctgacaa-cattgatgtgttctggaacaacttttaaccgtgctatcat |
20442584 |
T |
|
| Q |
144 |
gaatacaaccctacaccacaggtaacatgagggctatgttattgaagattagattcta |
201 |
Q |
| |
|
|||||||| |||||| || |||||| ||| ||||| ||||||| |||||||||||||| |
|
|
| T |
20442583 |
gaatacaaacctacatcataggtaaaatgtgggctgtgttattaaagattagattcta |
20442526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 20132831 - 20132916
Alignment:
| Q |
116 |
ctgcaacaactttcaaccgtgctgccatgaatacaaccctacaccacaggtaacatgagggctatgttattgaagattagattcta |
201 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||||||||||||||| | | |||||||||||||||||||||| ||| || ||||||| |
|
|
| T |
20132831 |
ctgcaacaaccttcaattgtgctcccatgaatacaaccctacacaaaatgtaacatgagggctatgttattaaaggttggattcta |
20132916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 20140036 - 20140146
Alignment:
| Q |
94 |
agctgataaacgttaaactgtgctgcaacaactttcaaccgtgctgccatgaatacaaccctaca---ccacaggtaacatgagggctatgttattgaag |
190 |
Q |
| |
|
||||||| |||||| || ||||||||| ||| ||||| ||||| ||||||||||||||||||| |||||||| ||||||||| ||||||||| ||| |
|
|
| T |
20140036 |
agctgatcaacgttgaagtgtgctgcagtaaccttcaattgtgctcccatgaatacaaccctacaatcccacaggtgacatgagggttatgttattaaag |
20140135 |
T |
|
| Q |
191 |
attagattcta |
201 |
Q |
| |
|
| ||||||||| |
|
|
| T |
20140136 |
agtagattcta |
20140146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 20408025 - 20407959
Alignment:
| Q |
33 |
aaactactaaacaccaatgcaaactgcagccactggaagctcacaccatacacgaaagaggagctga |
99 |
Q |
| |
|
||||||| || |||||| |||||| ||||| ||| |||| |||||||||||||||| || ||||||| |
|
|
| T |
20408025 |
aaactaccaagcaccaacgcaaaccgcagctactagaaggtcacaccatacacgaacgacgagctga |
20407959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 15963194 - 15963142
Alignment:
| Q |
90 |
gaggagctgataaacgttaaactgtgctgcaacaactttcaaccgtgctgcca |
142 |
Q |
| |
|
||||||||||| |||||| || |||||||||||||||||||||| |||||||| |
|
|
| T |
15963194 |
gaggagctgatcaacgttgaagtgtgctgcaacaactttcaaccatgctgcca |
15963142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University