View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12372_low_8 (Length: 217)
Name: NF12372_low_8
Description: NF12372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12372_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 3e-56; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 20373362 - 20373523
Alignment:
| Q |
1 |
taagaaaactaaattgaaaccaaataacattctatctagggnnnnnnnnnnnntttt--aaacagaaaatgaatttattagaaaagctcactcgaaatac |
98 |
Q |
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| T |
20373362 |
taagaaaactaaattgaaaccaaataacattctatctagggatatatatatatttttttaaacagaaaatgaatttattagaaaagctcactcgaaatac |
20373461 |
T |
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| Q |
99 |
aaacaagaaatagccgaaaaagttcggaaagatacaacaactctggcactagcagataacag |
160 |
Q |
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| T |
20373462 |
aaacaagaaatagccgaaaaagttcggaaagatacagcaactctggcactagcagataacag |
20373523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 13401045 - 13400952
Alignment:
| Q |
1 |
taagaaaactaaattgaaaccaaataacattctatctagggnnnnnnnnnnnnttttaaacagaaaatgaatttattagaaaagctcactcgaa |
94 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| |
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| T |
13401045 |
taagaaaactaaattgaaaccaaataacattctatctagggatatatatatttttttaaacaaaaaatgaatttattagaatagctcactcgaa |
13400952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 20408312 - 20408170
Alignment:
| Q |
1 |
taagaaaactaaattgaaaccaaataacattctatctagggnnnnnnnnnnnnttttaaacagaaaatgaatttattagaaaagctcactcgaaatacaa |
100 |
Q |
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||||||||| |||||| ||||||||||||||||||||||| ||| |||||| ||||||||||| ||||| |||||| || || ||||| |
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| T |
20408312 |
taagaaaacctaattgataccaaataacattctatctaggg--------attttttcaaacagtaaatgaatttaatagaacagctcattcaaagtacaa |
20408221 |
T |
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| Q |
101 |
acaagaaatagccgaaaaagttcggaaagatacaacaactctggcactagca |
152 |
Q |
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||||||| || || | |||| ||||||||||||||||||||| ||||||||| |
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| T |
20408220 |
acaagaagtacccaagaaagctcggaaagatacaacaactct-gcactagca |
20408170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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