View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12373_high_3 (Length: 366)
Name: NF12373_high_3
Description: NF12373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12373_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 5179338 - 5178988
Alignment:
| Q |
1 |
caactaagcatagatagtatttttgacaaccaaacttcataccataagccaaacaattcaaataacctaaatcatgtacaagagaatatgagcctgttgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5179338 |
caactaagcatagatagtatttttgacaaccaaacttcataccataagccaaacaattcaaataacctaaatcatgtacaagagaatatgagcttgttgg |
5179239 |
T |
|
| Q |
101 |
ggagtttggtagagcaccagaagcaacagctctcatgttacaccgtcttaagaaacgacaatgtgatcttagactggccgatgaaatatcagctagaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5179238 |
ggagtttggtagagcaccagaagcaacagctctcatgttacaccgtcttaagaaacgacaatgtgatcttagacgggccgatgaaatatcagctagaaga |
5179139 |
T |
|
| Q |
201 |
taatgtccagctaccaaatatagttgaggacgaaatttctgatctaaggagatgggtatcaagggactttcatgctgcaagccatgcacaagactcgaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5179138 |
taatgtccagctaccaaatatagttgaggacgaaatttctgatctaaggagatgggtatcaagggactttcatgctgcaagccatgcacaagactcgaag |
5179039 |
T |
|
| Q |
301 |
acatgtgtgctgtctgcaagttctagctcacaatcgagctgtgttacaagt |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5179038 |
acatgtgtgctgtctgcaagttctagctcacaatcgagctgtgttacaagt |
5178988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University