View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12373_high_4 (Length: 306)
Name: NF12373_high_4
Description: NF12373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12373_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 55508117 - 55507846
Alignment:
| Q |
18 |
atgatcacatttgtgcaggaaatatttggcaaattcacatttgttaccattggcatttacatgataattaagaacaaattagtacaaacctcatgaaaaa |
117 |
Q |
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| T |
55508117 |
atgatcacatttgtgcaggaaatatttggcaaattcacatttgttaccattggcatttacattataattaagaacaaattagtacaaacctcatgaaaaa |
55508018 |
T |
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| Q |
118 |
tctcaagtataagactatggtattcttccgagttcatcgacatataatagttcaataaactacgaagatctttcgcatcttgaaggcgattcactgttat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55508017 |
tctcaagtataagactatggtattcttccgagttcatcgacatataatagttcaataaactacgaagatctttcgcatcttgaaggcgattcactgttat |
55507918 |
T |
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| Q |
218 |
catctccatcatagactccctgaaatcctctctaggatcataagaacacttctcagttactaacattacaac |
289 |
Q |
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| T |
55507917 |
catctccatcatagactccctgaaatcctctctaggatcataagaacacttctcagttgctaacattacaac |
55507846 |
T |
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