View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12373_low_2 (Length: 378)
Name: NF12373_low_2
Description: NF12373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12373_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 369
Target Start/End: Original strand, 26081239 - 26081599
Alignment:
| Q |
9 |
agaacctgtgattatcgagcttgaacggcaacgagctcctgttgtagtgatatctcaccaggtttgtacacaagacattaagctaaatctgtccacataa |
108 |
Q |
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| T |
26081239 |
agaacctgtaattatcgagcttgaacggcaacgagctcctgttgtagtgatatctcaccaggtttgtacacaagacattaagctaaatctgtccacataa |
26081338 |
T |
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| Q |
109 |
aggctctatggttgcgtggttcttctaatctttgacattcttccataattttctcatttcaggcagttttgagggcattatatgcttattttgcggatag |
208 |
Q |
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| T |
26081339 |
aggctctatggttgagtggttcttctaatctttgacattcttccataattttctcatttcaggcagttttgagggcattatatgcttattttgcggatag |
26081438 |
T |
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| Q |
209 |
acctttgaaagaagttccacatatagaggtaatttgtggtttcatatttttgctcagctttttcaccttatggttcaatttagattaggttcttgcttat |
308 |
Q |
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| T |
26081439 |
acctttgaaagaagttccacatatagaggtaatttgtggtttcatatttttgcccagctttttcaccttatggttcaatttagattaggttcttgcttat |
26081538 |
T |
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| Q |
309 |
tggaacttaattgattgaaacacaaactattataatgcgaccttaacgtcttcacaggttc |
369 |
Q |
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| T |
26081539 |
tggaacttaattgattgaaacacgaactattataatgcgaccttaacgtcttcacaggttc |
26081599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 30598899 - 30598978
Alignment:
| Q |
162 |
tcatttcaggcagttttgagggcattatatgcttattttgcggatagacctttgaaagaagttccacatatagaggtaat |
241 |
Q |
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| T |
30598899 |
tcattgcaggcagttttgagggcattgtatgcttattttacggacaggcctttgaaagaaattccacatatggaggtaat |
30598978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 30598756 - 30598814
Alignment:
| Q |
13 |
cctgtgattatcgagcttgaacggcaacgagctcctgttgtagtgatatctcaccaggt |
71 |
Q |
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| T |
30598756 |
cctgtaattattgagcttgagcggcaacgagcacctgttgttgtggtatctcaccaggt |
30598814 |
T |
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