View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12373_low_5 (Length: 207)
Name: NF12373_low_5
Description: NF12373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12373_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 46815547 - 46815724
Alignment:
| Q |
18 |
ctctcttcttagatgcttgattggatgtctcttttaaacattccagaaaatctttttgcccttttgaattttaacagtatgatgtgtatgatattcttga |
117 |
Q |
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| T |
46815547 |
ctctcttcttagatgcttgattggatgtctcttttaaacattccagaaaatatttttgcccttttgaattttaacagtatgatgtgtatgatattcttga |
46815646 |
T |
|
| Q |
118 |
aatcttgttacacaaaatttgttatcagatattaataaatccattattatcacatcgatttattccatcacaacacag |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46815647 |
aatcttgttacacaaaatttgttatcagatattaataaatccattattatcacatcgatttattccatcacaacacag |
46815724 |
T |
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Target: chr8 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 13937082 - 13936905
Alignment:
| Q |
18 |
ctctcttcttagatgcttgattggatgtctcttttaaacattccagaaaatctttttgcccttttgaattttaacagtatgatgtgtatgatattcttga |
117 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13937082 |
ctctcttcttagatgcttgattggatgtctattttaaacattccagaaaatctttttgcccttttgaattttaactgtatgatgtgtatgatattcttga |
13936983 |
T |
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| Q |
118 |
aatcttgttacacaaaatttgttatcagatattaataaatccattattatcacatcgatttattccatcacaacacag |
195 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| |
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| T |
13936982 |
aatcttgttacacataatttgttatcagatattaataaatccataattattacatcgatttattacatcacaacacag |
13936905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 55413773 - 55413879
Alignment:
| Q |
18 |
ctctcttcttagatgcttgattggatgtctcttttaaacattccagaaaatctttttgcccttttgaattt-taacagtatgatgtgtatgatattcttg |
116 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| ||||||||||||||| || | || |||||||||||||||||||| |
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| T |
55413773 |
ctctcttcttagatgctagattgggtgtctcttttaaacattccagaacatctttctgcccttttgaatttgtatcggtttgatgtgtatgatattcttg |
55413872 |
T |
|
| Q |
117 |
aaatctt |
123 |
Q |
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||||||| |
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| T |
55413873 |
aaatctt |
55413879 |
T |
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