View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12374_high_1 (Length: 394)
Name: NF12374_high_1
Description: NF12374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12374_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 166 - 382
Target Start/End: Complemental strand, 30343578 - 30343362
Alignment:
| Q |
166 |
catcagagagctcaacatcttcatcagcttcctctggagcttcatcttcagcttgcagagctttcaccgttttgccattggatctgagtgttatagacat |
265 |
Q |
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| T |
30343578 |
catcagagagctcaacatcttcatcagcttcctctggagcttcatcttcagcttgcagagctttcaccgttttgccattggatctgagtgttatagacat |
30343479 |
T |
|
| Q |
266 |
ggctttaggtttagcctcatcatgattcagctccaaaacgtgactcatcaggttgctaattagggactccaatcccaannnnnnnagatctttaggttcc |
365 |
Q |
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| T |
30343478 |
ggctttaggtttagcctcatcatgattcagctttaacacgtgactcatcaggttgctaattagggactccaatcccaatttttttagatctttaagttcc |
30343379 |
T |
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| Q |
366 |
tgaatggttgtaacctt |
382 |
Q |
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|||||||||||||||| |
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| T |
30343378 |
cgaatggttgtaacctt |
30343362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 30347553 - 30347428
Alignment:
| Q |
98 |
tacctagaatgaaagtaaaatccatgcatagttgtttaacttttctagtgaggaaagcaagttatcatcatcagagagctcaacatcttcatcagcttcc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30347553 |
tacctagaatgaaagtaaaatccatgcatagttgtttaacttttctagtgaggaaagccagttatcatcatcagagagctcaacatcttcatcagcttcc |
30347454 |
T |
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| Q |
198 |
tctggagcttcatcttcagcttgcag |
223 |
Q |
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| T |
30347453 |
tctggagcttcatcttcagcttgcag |
30347428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 161 - 334
Target Start/End: Complemental strand, 28560689 - 28560515
Alignment:
| Q |
161 |
atcatcatcagagagctcaacatcttcatcagcttcctctggagcttcatcttcagcttgcagagctttcaccgttttgcc-attggatctgagtgttat |
259 |
Q |
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||||||| |||| | ||||||||||||||||||||||| | |||||||||||| ||| ||||||||||||||| ||||||| |||||| |||||||||| |
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| T |
28560689 |
atcatcaccagatacctcaacatcttcatcagcttcctatagagcttcatctttagcctgcagagctttcaccattttgccttttggatttgagtgttat |
28560590 |
T |
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| Q |
260 |
agacatggctttaggtttagcctcatcatgattcagctccaaaacgtgactcatcaggttgctaattagggactc |
334 |
Q |
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|||| || ||||||||||| | ||||||||||||| ||| || | ||||||| | || ||||||| |||||||| |
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| T |
28560589 |
agacttgactttaggtttatcatcatcatgattcaactctaactcatgactcaccgggctgctaataagggactc |
28560515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 292
Target Start/End: Complemental strand, 23213087 - 23212970
Alignment:
| Q |
176 |
ctcaacatcttcatcagcttcctctggagcttcatcttcagcttgcagagctttcacc-gttttgccattggatctgagtgttatagacatggctttagg |
274 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||| |||||| |||| ||| ||||||| |||||| |||| |||||||| ||| |||||| |
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| T |
23213087 |
ctcaacatcttcattagcttcctttggagcttcatcttcagcctgcagacctttgaccatttttgcctttggatttgagcattatagacttggatttagg |
23212988 |
T |
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| Q |
275 |
tttagcctcatcatgatt |
292 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
23212987 |
tttagcctcatcatgatt |
23212970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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