View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12374_high_2 (Length: 379)

Name: NF12374_high_2
Description: NF12374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12374_high_2
NF12374_high_2
[»] chr3 (8 HSPs)
chr3 (1-350)||(29821885-29822219)
chr3 (265-316)||(49333873-49333923)
chr3 (267-341)||(54653010-54653085)
chr3 (267-320)||(43102304-43102357)
chr3 (265-360)||(33149973-33150069)
chr3 (265-320)||(47807849-47807904)
chr3 (265-310)||(12992033-12992077)
chr3 (265-310)||(50259425-50259469)
[»] chr5 (3 HSPs)
chr5 (122-264)||(40880222-40880364)
chr5 (265-320)||(1663507-1663562)
chr5 (265-314)||(10084988-10085037)
[»] chr8 (4 HSPs)
chr8 (267-346)||(118777-118856)
chr8 (265-320)||(5777111-5777166)
chr8 (265-310)||(45436181-45436225)
chr8 (276-320)||(7487145-7487188)
[»] chr6 (1 HSPs)
chr6 (313-357)||(24546535-24546579)
[»] chr1 (2 HSPs)
chr1 (267-341)||(3978364-3978439)
chr1 (265-310)||(38961773-38961817)
[»] chr7 (3 HSPs)
chr7 (265-341)||(38407199-38407275)
chr7 (267-320)||(19279339-19279392)
chr7 (265-314)||(25154619-25154668)
[»] chr4 (1 HSPs)
chr4 (265-341)||(26791090-26791166)
[»] chr2 (1 HSPs)
chr2 (267-341)||(34039627-34039702)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 29821885 - 29822219
Alignment:
Q  1 aaattatatatgttaaatagtttatttataatttaaaataattgcaatagtcagtttctataattatgcagtttagaattatgtagtttagtaactgcta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||| | |    
T  29821885 aaattatatatgttaaatagtttatttataatttaaaataattgcaatagtcagtttctataattatgcagtt---------------tagtaactacca 29821969  T
Q  101 ttttctaggaagttagttatcatgtaatatgtatttgaatgattgtacgtttatcgaatcatgaagaaaatattcagaaaaacttccggccttcctttct 200  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  29821970 ttttctaggaagttagtttccatgtaatatgtatttgaatgattgtacttttatggaatcatgaagaaaatattcagaaaaacttccagccttcctttct 29822069  T
Q  201 tctttaggagacccatcccttctcgaattggaataatcactacttctctaacaatcatttatcatgttgttgttgaaattgagattggggtgtttgtggt 300  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  29822070 tttttaggagacccatcccttctcgaattggaataatcactacttctctaacaatcatctatcatattgttgttgaaattgagattggggtgtttgtggt 29822169  T
Q  301 ttttgaaaaggttgatgttgctgatattgtaatgaagaaatgttcttgtt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29822170 ttttgaaaaggttgatgttgctgatattgtaatgaagaaatgttcttgtt 29822219  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 49333873 - 49333923
Alignment:
Q  265 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgat 316  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  49333873 tgttgttgttgaaattgagatt-gggtgtttgtggttgttgaaaaggttgat 49333923  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 341
Target Start/End: Complemental strand, 54653085 - 54653010
Alignment:
Q  267 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 341  Q
    ||||||||||||||||| ||| | ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  54653085 ttgttgttgaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 54653010  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 43102357 - 43102304
Alignment:
Q  267 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 320  Q
    ||||||||||||||| ||||||  ||||||||||| |||||||||||| |||||    
T  43102357 ttgttgttgaaattgggattggaatgtttgtggttgttgaaaaggttgttgttg 43102304  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 360
Target Start/End: Complemental strand, 33150069 - 33149973
Alignment:
Q  265 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgatattgtaatgaagaaa-tgttcttgttgttgatgatg 360  Q
    |||||||||||||||||  |||||||||||| ||||| ||| |||||||| || || || |||||| || || ||| |||| ||||||||| |||||    
T  33150069 tgttgttgttgaaattgccattggggtgtttatggttcttgcaaaggttgctgctgttgttattgtgattaaaaaattgttgttgttgttgttgatg 33149973  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 320
Target Start/End: Original strand, 47807849 - 47807904
Alignment:
Q  265 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 320  Q
    ||||||||||||||||||||||  | ||||||||||| | |||||||||| |||||    
T  47807849 tgttgttgttgaaattgagattaagatgtttgtggttgtcgaaaaggttgttgttg 47807904  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 12992033 - 12992077
Alignment:
Q  265 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 310  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  12992033 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 12992077  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 50259469 - 50259425
Alignment:
Q  265 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 310  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  50259469 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 50259425  T

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Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 122 - 264
Target Start/End: Complemental strand, 40880364 - 40880222
Alignment:
Q  122 atgtaatatgtatttgaatgattgtacgtttatcgaatcatgaagaaaatattcagaaaaacttccggccttcctttcttctttaggagacccatccctt 221  Q
    ||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||| |||||||| | |||||||||||||||||||||||| ||||||||    
T  40880364 atgtaatgtgtatttgaatgattgtacgtttgttgaatcattaagaaaatattcataaaaacttacagccttcctttcttctttaggagactcatccctt 40880265  T
Q  222 ctcgaattggaataatcactacttctctaacaatcatttatca 264  Q
    |||||||||| ||||||||||||||| |||||||||| |||||    
T  40880264 ctcgaattgggataatcactacttctttaacaatcatctatca 40880222  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 1663562 - 1663507
Alignment:
Q  265 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 320  Q
    ||||||||||||||||||||||| | ||||||||||| ||||||| |||| |||||    
T  1663562 tgttgttgttgaaattgagattgagatgtttgtggttgttgaaaaagttgttgttg 1663507  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 10085037 - 10084988
Alignment:
Q  265 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttg 314  Q
    ||||||||||||||||||||||||  |||| |||||| ||||||||||||    
T  10085037 tgttgttgttgaaattgagattggaatgttcgtggttgttgaaaaggttg 10084988  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 118777 - 118856
Alignment:
Q  267 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaatgttct 346  Q
    ||||| ||||||||||||||||||||||| ||| || ||||||||||||||||| || | ||||| |||||||||| ||||    
T  118777 ttgttattgaaattgagattggggtgtttatgg-ttatgaaaaggttgatgttgttgctaattgtgatgaagaaattttct 118856  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 320
Target Start/End: Original strand, 5777111 - 5777166
Alignment:
Q  265 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 320  Q
    ||||||||||| ||||||||||||| |||||| | || |||||||||||| |||||    
T  5777111 tgttgttgttggaattgagattgggttgtttgagattgttgaaaaggttgttgttg 5777166  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 45436181 - 45436225
Alignment:
Q  265 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 310  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  45436181 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 45436225  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 7487145 - 7487188
Alignment:
Q  276 aaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 320  Q
    |||||||||||||||||||| ||| || |||||||||||||||||    
T  7487145 aaattgagattggggtgtttatgg-ttatgaaaaggttgatgttg 7487188  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 24546535 - 24546579
Alignment:
Q  313 tgatgttgctgatattgtaatgaagaaatgttcttgttgttgatg 357  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||    
T  24546535 tgatgttgctggtattgtgatgaagaaatgttcttgttgttgatg 24546579  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 341
Target Start/End: Complemental strand, 3978439 - 3978364
Alignment:
Q  267 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 341  Q
    ||||||||||||||||| ||| | ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  3978439 ttgttgttgaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 3978364  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 38961773 - 38961817
Alignment:
Q  265 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 310  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  38961773 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 38961817  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 341
Target Start/End: Original strand, 38407199 - 38407275
Alignment:
Q  265 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 341  Q
    |||||||||||||||||||||| ||||| || ||| || ||||||||||||||||| || | ||||| ||||||||||    
T  38407199 tgttgttgttgaaattgagattagggtgattatgg-ttatgaaaaggttgatgttgttgctaattgtgatgaagaaat 38407275  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 320
Target Start/End: Original strand, 19279339 - 19279392
Alignment:
Q  267 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 320  Q
    |||||||| |||||||| ||| | ||||||||||| |||||||||||| |||||    
T  19279339 ttgttgttaaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttg 19279392  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 25154619 - 25154668
Alignment:
Q  265 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttg 314  Q
    ||||||||||| | |||||||||| |||||||||||| ||||||| ||||    
T  25154619 tgttgttgttggatttgagattggagtgtttgtggttgttgaaaaagttg 25154668  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 341
Target Start/End: Original strand, 26791090 - 26791166
Alignment:
Q  265 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 341  Q
    ||||| ||||||||||||||| ||| ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  26791090 tgttgctgttgaaattgagat-gggatgtttgtggttgttgaaaaggttgttgttgttgttcatggtaatgaagaaat 26791166  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 341
Target Start/End: Complemental strand, 34039702 - 34039627
Alignment:
Q  267 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 341  Q
    ||||||||||||||| ||||||  | ||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  34039702 ttgttgttgaaattgggattggaatatttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 34039627  T

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