View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12374_high_3 (Length: 356)
Name: NF12374_high_3
Description: NF12374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12374_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 39 - 348
Target Start/End: Complemental strand, 7832415 - 7832128
Alignment:
| Q |
39 |
tgaattatatgtcgaactcatttatcattccccacttttcaggtgatataagaaagaatagtactaggaatttgaatattgctcctcctagcgagagatg |
138 |
Q |
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| T |
7832415 |
tgaattatatgtcgaactcatttatcattccccacttttcaggtgatataagaaagaagagtactaggaatttgaatattgctcctcctagcaagagatg |
7832316 |
T |
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| Q |
139 |
ggtgtgtttttgggttgccgaggagcctttgggaataacctttgtatgttatggagatgcttccccaaaacctccctttgttcggtttgataatgttggg |
238 |
Q |
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| T |
7832315 |
ggtgcgtttttgggttgccgaggagcctttgagaa----------------------tgcttccccaaaacctccctttgttcggattgataatgttggg |
7832238 |
T |
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| Q |
239 |
acaagagagtgtgaagtttgggttcccttttcagagtaagggatttgtattacttttgaaggaataaaaggttcctatgtttgaaatagtttcaaaaaga |
338 |
Q |
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| T |
7832237 |
acaagagagtgtgaagtttgggttcccttttcagactaagggatttgtattacttttgaaggaataaaaggttcctatgtttgaaatagtttcaaaaaga |
7832138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 7832488 - 7832449
Alignment:
| Q |
1 |
tatcgcaacaatgctactttttatcttttgactttatatg |
40 |
Q |
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| T |
7832488 |
tatcgcaacaaagctactttttatcttttgactttttatg |
7832449 |
T |
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