View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12374_high_5 (Length: 336)
Name: NF12374_high_5
Description: NF12374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12374_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 2 - 320
Target Start/End: Original strand, 41346324 - 41346643
Alignment:
| Q |
2 |
aattttgttttttgtccttgtggnnnnnnncgacatgttaatggtttttcattttctttcttataaataatgggttaaattcgaatcaccaaaggnnnnn |
101 |
Q |
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| T |
41346324 |
aattttgttttttgtccttgtggaaaaaagcgacatgttaatggtttttcattttctttcttataaataatgggttaaattcgaatcaccaaaggaaaaa |
41346423 |
T |
|
| Q |
102 |
nngataaataagtttttaatccgtaaatatattaaattttgtgtttagtacctctaaattttttctttgaataatggtcctacaaatgtttttctatcac |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
41346424 |
aagataaataagtttttaatccgtaaatatattaaattttgtgtttagtacctctaaattttttctttgaataatggtcctgcagatgtttttctatcac |
41346523 |
T |
|
| Q |
202 |
tatttttcgttcttgtac-nnnnnnnnnncttcatgaaatggaaaataaaacacaaacaaggggacaagaaagaaaactatatgtttcgtagacaagcga |
300 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41346524 |
tatttttcgttcttgtacttttttttcttcttcataaaatggaaaataaaacacaaacaaggggacaagaaagaaaactatatgtttcgtagacaagcaa |
41346623 |
T |
|
| Q |
301 |
cacctataacatcgttcatc |
320 |
Q |
| |
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||||||||||||||| |||| |
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| T |
41346624 |
cacctataacatcgtccatc |
41346643 |
T |
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