View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12374_high_9 (Length: 311)
Name: NF12374_high_9
Description: NF12374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12374_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 45 - 247
Target Start/End: Original strand, 54465895 - 54466097
Alignment:
| Q |
45 |
agaggatgattgctgatcttctagctataaataggtgatttattagttataggaatcatccacttccatcgaaatataaaatcagtgtcttttaatatca |
144 |
Q |
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| T |
54465895 |
agaggatgattgctgatcttctagctataaataggtgatttattagttataggaatcatccacttccatcgaaatataaaatcagtggcttttaatatca |
54465994 |
T |
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| Q |
145 |
aagatgagacctgctcttgctttatttcccctcttgcttttcttggtatgttttacttttcgtggtttcaattagtagagtgcactctaaattctaatgc |
244 |
Q |
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| T |
54465995 |
aagatgagacctgctcttgctttatttcccctcttgcttttcttggtatgttttacttttcgtggtttcaattagtagagtgcactctaaattctaatgc |
54466094 |
T |
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| Q |
245 |
ttc |
247 |
Q |
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| T |
54466095 |
ttc |
54466097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 54458152 - 54458220
Alignment:
| Q |
145 |
aagatgagacctgctcttgctttatttcccctcttgcttttcttggtatgttttacttttcgtggtttc |
213 |
Q |
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| T |
54458152 |
aagatgagatctgctcttgctttattgcctctcatgcttatcttggtatgttttacttttcatggtttc |
54458220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 49747369 - 49747318
Alignment:
| Q |
145 |
aagatgagacctgctcttgctttatttcccctcttgcttttcttggtatgtt |
196 |
Q |
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| T |
49747369 |
aagatgagacctgctcttgctttactgcctctcttgcttttcttggtatgtt |
49747318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 54466111 - 54466149
Alignment:
| Q |
264 |
cctctgatattttacatttaattgaacaattatattctt |
302 |
Q |
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| T |
54466111 |
cctctgatattttacatttaattgaacaattattttctt |
54466149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 11236736 - 11236801
Alignment:
| Q |
145 |
aagatgagacctgctcttgctttatttcccctcttgcttttcttggtatgttttacttttcgtggt |
210 |
Q |
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| T |
11236736 |
aagatgagaactgctcttgctttattgcctctcatgcttttcttggtaagttacacttttcttggt |
11236801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 11226283 - 11226343
Alignment:
| Q |
145 |
aagatgagacctgctcttgctttatttcccctcttgcttttcttggtatgttttacttttc |
205 |
Q |
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| T |
11226283 |
aagatgagagctgctcttgctttattgcctctcttgcttttcatggtaagttacacttttc |
11226343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 54458054 - 54458115
Alignment:
| Q |
68 |
gctataaataggtgatttattagttataggaatcatccacttccatcgaaatataaaatcag |
129 |
Q |
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| T |
54458054 |
gctataaataggtgattcactagttatagggatcatccattgccatccaaacataaagtcag |
54458115 |
T |
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