View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12374_low_1 (Length: 249)

Name: NF12374_low_1
Description: NF12374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12374_low_1
NF12374_low_1
[»] chr3 (20 HSPs)
chr3 (17-235)||(10432025-10432243)
chr3 (17-235)||(10197543-10197761)
chr3 (17-235)||(10361782-10362000)
chr3 (17-235)||(10262568-10262786)
chr3 (17-235)||(10090660-10090879)
chr3 (21-235)||(10373830-10374044)
chr3 (23-235)||(11779969-11780181)
chr3 (52-235)||(10665396-10665579)
chr3 (21-235)||(10033870-10034084)
chr3 (17-235)||(10582480-10582698)
chr3 (23-235)||(11771104-11771316)
chr3 (21-235)||(9851609-9851823)
chr3 (21-235)||(10128795-10129009)
chr3 (21-235)||(9840731-9840942)
chr3 (54-231)||(10079284-10079461)
chr3 (54-231)||(10186254-10186431)
chr3 (21-235)||(10519355-10519569)
chr3 (21-235)||(10502453-10502667)
chr3 (21-235)||(10530517-10530731)
chr3 (154-235)||(10679308-10679389)
[»] scaffold0083 (1 HSPs)
scaffold0083 (21-235)||(55587-55801)
[»] chr2 (1 HSPs)
chr2 (21-234)||(26908759-26908972)
[»] chr8 (2 HSPs)
chr8 (21-235)||(11486905-11487119)
chr8 (21-233)||(44955662-44955874)
[»] chr4 (1 HSPs)
chr4 (128-235)||(17851018-17851125)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 10432025 - 10432243
Alignment:
Q  17 gctctgtttccaatagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaa 116  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10432025 gctctgtttccagtagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcaggacaattatgtaa 10432124  T
Q  117 ctccataactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10432125 ctccataactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggat 10432224  T
Q  217 ggaaatggtaggaaggaag 235  Q
    |||||||||||||||||||    
T  10432225 ggaaatggtaggaaggaag 10432243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 10197761 - 10197543
Alignment:
Q  17 gctctgtttccaatagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaa 116  Q
    |||||||||||||||| ||||||||||||  |||  ||||||||| |||||||||||||||||||||||| ||||||||||||||   ||||||| ||||    
T  10197761 gctctgtttccaatagatgagaacaaccttttattacaatttcttttatgcaaggaaggttgctaggcaaatgtccccttagttctcgacaattacgtaa 10197662  T
Q  117 ctccataactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggat 216  Q
    ||||||| ||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10197661 ctccatagctctaagtcgaggaaaagcaaattttatgccttcatagggaagccattcattccaatttggcatgttgtcgaattttatacgctcaagggtt 10197562  T
Q  217 ggaaatggtaggaaggaag 235  Q
    ||||||||  |||||||||    
T  10197561 ggaaatggctggaaggaag 10197543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 10361782 - 10362000
Alignment:
Q  17 gctctgtttccaatagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaa 116  Q
    |||||||||||||||| ||||||||||||  |||  |||||||||||||||||||||||||||| ||||| |||||||||||||| | ||||||||||||    
T  10361782 gctctgtttccaatagatgagaacaaccttgtattacaatttcttctatgcaaggaaggttgctcggcaaatgtccccttagttctggacaattatgtaa 10361881  T
Q  117 ctccataactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggat 216  Q
    ||||||| |||||||| |||||||||||  |||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  10361882 ctccatagctctaagttgaggaaaagcacattttatgccttcaaagggaatccattcattccaatttggcatgttgtcgaaatttatgcgctcaagggat 10361981  T
Q  217 ggaaatggtaggaaggaag 235  Q
    ||||||||| |||||||||    
T  10361982 ggaaatggttggaaggaag 10362000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 10262786 - 10262568
Alignment:
Q  17 gctctgtttccaatagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaa 116  Q
    |||||||||||||||| ||||||||||||  |||  |||||||||||||||||||||| ||||||||||| ||| |||||||||| | ||||||||||||    
T  10262786 gctctgtttccaatagatgagaacaaccttttattacaatttcttctatgcaaggaagtttgctaggcaaatgttcccttagttctggacaattatgtaa 10262687  T
Q  117 ctccataactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggat 216  Q
    ||||||| |||||||||||||||||| || ||||||||||||| |||| |||||||||||||||||||||| | ||| ||||||||||||||||||||||    
T  10262686 ctccatagctctaagtcgaggaaaagaaagttttatgccttcatagggaagccattcattccaatttggcaagctgttgaattttatacgctcaagggat 10262587  T
Q  217 ggaaatggtaggaaggaag 235  Q
     |||||||| |||||||||    
T  10262586 tgaaatggttggaaggaag 10262568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 10090879 - 10090660
Alignment:
Q  17 gctctgtttccaatagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgta- 115  Q
    |||||||||||||||| ||||||||||||  |||  ||||||||| |||||||||||||||||||||||| ||||||||||||||   ||||||| ||      
T  10090879 gctctgtttccaatagatgagaacaaccttttattacaatttcttttatgcaaggaaggttgctaggcaaatgtccccttagttctcgacaattacgtgt 10090780  T
Q  116 actccataactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaaggga 215  Q
    |||||||| ||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  10090779 actccatagctctaagtcgaggaaaagcaaattttatgccttcatagggaagccattcattccaatttggcatgttgtcgaattttatacgctcaagggt 10090680  T
Q  216 tggaaatggtaggaaggaag 235  Q
    |||||||||  |||||||||    
T  10090679 tggaaatggctggaaggaag 10090660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 10373830 - 10374044
Alignment:
Q  21 tgtttccaatagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaactcc 120  Q
    |||||||||||| |||||||||||||||||  |||||||||||||| ||||||||||| | ||||| |||||||||||||| | ||||||| |||||||     
T  10373830 tgtttccaatagatgagaacaacctgatattacaatttcttctatggaaggaaggttggtgggcaaatgtccccttagttctggacaattacgtaactct 10373929  T
Q  121 ataactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaa 220  Q
    ||| |  |||||||||||||||||| |||||||||||||||||| | |||||||||||||||  ||||||||||||| |||||||||||||||||||| |    
T  10373930 atagccttaagtcgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatggga 10374029  T
Q  221 atggtaggaaggaag 235  Q
    ||||| |||||||||    
T  10374030 atggttggaaggaag 10374044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 235
Target Start/End: Original strand, 11779969 - 11780181
Alignment:
Q  23 tttccaatagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaactccat 122  Q
    |||||||||| ||||||||||||  |||  |||||||||| ||||||||||||||| ||||||| |||||||||||||||| ||||||| | ||||||||    
T  11779969 tttccaatagatgagaacaaccttttattacaatttcttcgatgcaaggaaggttggtaggcaaatgtccccttagttcaggacaattacgcaactccat 11780068  T
Q  123 aactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaaat 222  Q
    |  | | ||||||||||| |||| |||||| ||||||||||| | ||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||    
T  11780069 agttttgagtcgaggaaatgcaaattttataccttcaaagggaaaccattcattccaatttggcatgttgtcaaattttataagctcgagggatggaaat 11780168  T
Q  223 ggtaggaaggaag 235  Q
    ||| |||||||||    
T  11780169 ggttggaaggaag 11780181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 52 - 235
Target Start/End: Complemental strand, 10665579 - 10665396
Alignment:
Q  52 tcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaactccataactctaagtcgaggaaaagcaactttta 151  Q
    |||||||||||||| |||||||| | ||||||||| |||||| ||||||  | ||||||| ||||||||||  ||||||||||||||||||||| |||||    
T  10665579 tcaatttcttctatacaaggaagatggctaggcaaatgtccctttagttttggacaattacgtaactccatggctctaagtcgaggaaaagcaaatttta 10665480  T
Q  152 tgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaaatggtaggaaggaag 235  Q
    ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  10665479 tgccttcaaagggaatccattcattccaatttggtatgttgtcgaattttatacactcaagggatggaaatggttggaaggaag 10665396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 10034084 - 10033870
Alignment:
Q  21 tgtttccaatagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaactcc 120  Q
    |||||||||||| |||||||||||||||||  |||||| ||||||| ||||||||||| | ||||| |||||||||||||| | |||||||| ||||||     
T  10034084 tgtttccaatagatgagaacaacctgatattacaattttttctatggaaggaaggttggtgggcaaatgtccccttagttctggacaattatataactct 10033985  T
Q  121 ataactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaa 220  Q
    ||| |  |||||||||||||||||  |||||||||||||||||| | |||||||||||||||   |||||||||||| |||||||||||||||||| | |    
T  10033984 atagccttaagtcgaggaaaagcacattttatgccttcaaagggaatccattcattccaattgaccatgttgtcgaactttatacgctcaagggatcgga 10033885  T
Q  221 atggtaggaaggaag 235  Q
    ||||| |||||||||    
T  10033884 atggttggaaggaag 10033870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 10582698 - 10582480
Alignment:
Q  17 gctctgtttccaatagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaa 116  Q
    |||||||||||||||| |||  |||||||  ||| ||||||||||||||||||||||| | ||||||||| |||||| ||||||  | ||||||| ||||    
T  10582698 gctctgtttccaatagatgaacacaaccttctatttcaatttcttctatgcaaggaagatggctaggcaaatgtccctttagtttgggacaattacgtaa 10582599  T
Q  117 ctccataactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggat 216  Q
    || |||| ||| |||| |||||||||||| || ||||||||||||||| ||||||| |||||||||||| || |||||||||||||||  ||||||||||    
T  10582598 cttcatagctcgaagttgaggaaaagcaaattgtatgccttcaaagggaagccatttattccaatttggtatattgtcgaattttatatactcaagggat 10582499  T
Q  217 ggaaatggtaggaaggaag 235  Q
    ||||||||| |||||||||    
T  10582498 ggaaatggttggaaggaag 10582480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 11771316 - 11771104
Alignment:
Q  23 tttccaatagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaactccat 122  Q
    |||||||||| ||||||||||||   ||  |||||||||| ||||||||||||||| |||| || ||| |||||||||||| ||||||| | ||||||||    
T  11771316 tttccaatagatgagaacaacctttgattacaatttcttcgatgcaaggaaggttggtaggaaaatgtacccttagttcaggacaattacgcaactccat 11771217  T
Q  123 aactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaaat 222  Q
    |  | | |||||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||    
T  11771216 agttttgagtcgaggaaaagcaaattttataccttcaaaaggaagccattcattccaatttggcatgttgtcaaattttataagctcgagggatggaaat 11771117  T
Q  223 ggtaggaaggaag 235  Q
    ||| |||||||||    
T  11771116 ggttggaaggaag 11771104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 9851823 - 9851609
Alignment:
Q  21 tgtttccaatagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaactcc 120  Q
    |||||||||||| |||||||||||||||||  |||||||||||||| ||||||||||| | ||||| | |||||||||||  | ||||| | |||||||     
T  9851823 tgtttccaatagatgagaacaacctgatattacaatttcttctatggaaggaaggttggtgggcaaatatccccttagttttggacaatcacgtaactct 9851724  T
Q  121 ataactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaa 220  Q
    ||  |  ||||| |||||||||||| |||||||||||||||||| | |||||||||||||||  ||||||||||||| |||||||||||||||||||| |    
T  9851723 attgccttaagttgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatggga 9851624  T
Q  221 atggtaggaaggaag 235  Q
    ||||| |||||||||    
T  9851623 atggttggaaggaag 9851609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 10129009 - 10128795
Alignment:
Q  21 tgtttccaatagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaactcc 120  Q
    |||||||||||| |||||||||||||||||  |||||||||||||| ||||||||||| | ||||| |||||||||||||| | ||||||   ||||||     
T  10129009 tgtttccaatagatgagaacaacctgatattacaatttcttctatggaaggaaggttggtgggcaaatgtccccttagttctggacaattccataactct 10128910  T
Q  121 ataactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaa 220  Q
    ||| |  ||||| |||||||||||| |||||||||||||||||| | |||||||||||||||   |||||||||||| |||||| ||||||||||| | |    
T  10128909 atagccttaagttgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgaccatgttgtcgaactttatatgctcaagggatcgga 10128810  T
Q  221 atggtaggaaggaag 235  Q
    ||||| |||||||||    
T  10128809 atggttggaaggaag 10128795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 9840942 - 9840731
Alignment:
Q  21 tgtttccaatagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaactcc 120  Q
    |||||||||||| |||||||||||||||||  |||||| ||||||| ||||||||||| | ||||| | |||||||||||| | ||||||  |||||||     
T  9840942 tgtttccaatagatgagaacaacctgatattacaattttttctatggaaggaaggttggtgggcaaatatccccttagttctggacaattgcgtaactct 9840843  T
Q  121 ataactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaa 220  Q
    ||| |  ||||| |||||||||||   ||||||||||||||||| | |||||||||||||||  ||||||||||||| |||||||||||||||||||| |    
T  9840842 atagccttaagttgaggaaaagca---tttatgccttcaaagggaatccattcattccaattgagcatgttgtcgaactttatacgctcaagggatggga 9840746  T
Q  221 atggtaggaaggaag 235  Q
    ||||| |||||||||    
T  9840745 atggttggaaggaag 9840731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 54 - 231
Target Start/End: Complemental strand, 10079461 - 10079284
Alignment:
Q  54 aatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaactccataactctaagtcgaggaaaagcaacttttatg 153  Q
    ||||||||||||||||||||||| |||||| || || ||| ||||||||| ||||| || ||||||||||  |||||||||||||||| |||  |||||     
T  10079461 aatttcttctatgcaaggaaggtcgctaggaaaatgcccctttagttcaggacaatcatctaactccatagttctaagtcgaggaaaaacaaaatttatt 10079362  T
Q  154 ccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaaatggtaggaag 231  Q
    ||||||||||| ||||||| ||||||||||||||||||||  |||||||| ||||||||||||||||||||| |||||    
T  10079361 ccttcaaagggaagccattgattccaatttggcatgttgttaaattttatgcgctcaagggatggaaatggttggaag 10079284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 54 - 231
Target Start/End: Complemental strand, 10186431 - 10186254
Alignment:
Q  54 aatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaactccataactctaagtcgaggaaaagcaacttttatg 153  Q
    |||||||||||||||||||||||  |||||||| || ||| ||||||||| ||||| || ||||||||||  |||||||||||||||| |||  |||||     
T  10186431 aatttcttctatgcaaggaaggtcactaggcaaatgcccctttagttcaggacaatcatctaactccatagttctaagtcgaggaaaaacaaaatttatt 10186332  T
Q  154 ccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaaatggtaggaag 231  Q
    ||||||||||| ||||||| ||||||||||||||||||||  |||||||| ||||||||||||||||||||| |||||    
T  10186331 ccttcaaagggaagccattgattccaatttggcatgttgttaaattttatgcgctcaagggatggaaatggttggaag 10186254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 10519569 - 10519355
Alignment:
Q  21 tgtttccaatagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaactcc 120  Q
    |||||||||||| |||  |||||||  |||  |||||||||||||| ||||||||||| | ||||| |||||||||||||| | ||||||| ||||||      
T  10519569 tgtttccaatagatgaacacaaccttttattacaatttcttctatggaaggaaggttggtgggcaaatgtccccttagttctggacaattacgtaacttt 10519470  T
Q  121 ataactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaa 220  Q
    ||| |  ||||| |||||||||||| |||||||||||| ||||| | |||||||||||||||  |||||||||||||  ||||||||||||||||||| |    
T  10519469 atagccttaagttgaggaaaagcaaattttatgccttcgaagggaatccattcattccaattgagcatgttgtcgaacattatacgctcaagggatggga 10519370  T
Q  221 atggtaggaaggaag 235  Q
    ||||| |||||||||    
T  10519369 atggttggaaggaag 10519355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 10502667 - 10502453
Alignment:
Q  21 tgtttccaatagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaactcc 120  Q
    |||||||||||| |||| |||||||  |||  |||||||||||||| ||| ||||| || ||| || |  ||||| | ||||||||||||| ||| || |    
T  10502667 tgtttccaatagatgagcacaaccttctattacaatttcttctatgaaagaaaggtggcaaggtaaattccccctcaattcagaacaattaagtatcttc 10502568  T
Q  121 ataactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaa 220  Q
    | || | |||| |||||||| ||||  ||  | ||||||||||  |||||||| ||||||||||||||||||   ||| |||||| ||||||||| ||||    
T  10502567 agaattttaagacgaggaaaggcaaaattgtttccttcaaaggaaagccattccttccaatttggcatgttgaaaaatgttatacactcaagggagggaa 10502468  T
Q  221 atggtaggaaggaag 235  Q
    ||||| |||||||||    
T  10502467 atggttggaaggaag 10502453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 10530731 - 10530517
Alignment:
Q  21 tgtttccaatagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaactcc 120  Q
    ||||||||||||  ||| |||||||  ||| | ||||||||||||| |||  |||| |||||| || |||||||| | ||| | |||||||| ||||||     
T  10530731 tgtttccaatagacgagcacaaccttctatttgaatttcttctatggaagataggtggctaggaaaatgtcccctaaattctggacaattatataactca 10530632  T
Q  121 ataactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaa 220  Q
    | |  | |||| |  ||||||||||   |  | |||||||| || |||||||||||||||||||||||| | |  ||| |||||||||||||||| ||||    
T  10530631 agagttttaagacatggaaaagcaaagctgtttccttcaaaagggagccattcattccaatttggcatgatttgaaatcttatacgctcaagggacggaa 10530532  T
Q  221 atggtaggaaggaag 235  Q
    ||||| |||||||||    
T  10530531 atggttggaaggaag 10530517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 10679389 - 10679308
Alignment:
Q  154 ccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaaatggtaggaaggaag 235  Q
    |||||||| || |||||||||||||||||||||||| | |  ||| |||||| ||||||||| ||||||||| |||||||||    
T  10679389 ccttcaaaagggagccattcattccaatttggcatgatttgaaatcttatacactcaagggacggaaatggttggaaggaag 10679308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 55587 - 55801
Alignment:
Q  21 tgtttccaatagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaactcc 120  Q
    |||||||||||| |||||||||||||||||  |||||||||||||| ||||||||||| | ||||| |||||||||||||| | ||||| | |||||||     
T  55587 tgtttccaatagatgagaacaacctgatattacaatttcttctatggaaggaaggttggtgggcaaatgtccccttagttctggacaatcacgtaactct 55686  T
Q  121 ataactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaa 220  Q
    ||  |  ||||| |||||||||||| |||||||||||||||||| | |||||||||||||||   |||||||||||| ||||||  |||||||||| | |    
T  55687 attgccttaagttgaggaaaagcaaattttatgccttcaaagggaatccattcattccaattgaacatgttgtcgaactttataaactcaagggatagga 55786  T
Q  221 atggtaggaaggaag 235  Q
    ||||| |||||||||    
T  55787 atggttggaaggaag 55801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 26908972 - 26908759
Alignment:
Q  21 tgtttccaatagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaactcc 120  Q
    |||||||||||| ||| | ||||||  |||  ||||||||||||||||||||||||||||||||||  ||||  ||||||  | ||||||||| |||||     
T  26908972 tgtttccaatagatgatagcaaccttttattacaatttcttctatgcaaggaaggttgctaggcaaaagtccttttagttttggacaattatgcaactca 26908873  T
Q  121 ataactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaa 220  Q
    |||  ||| ||||||||||||| ||  || || ||||||||||| ||||||| ||||||||||||||||||||  ||||||||||||||||||||| |||    
T  26908872 atagttctgagtcgaggaaaagaaaaattcattccttcaaagggaagccattgattccaatttggcatgttgttaaattttatacgctcaagggattgaa 26908773  T
Q  221 atggtaggaaggaa 234  Q
    ||||| ||||||||    
T  26908772 atggttggaaggaa 26908759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 11487119 - 11486905
Alignment:
Q  21 tgtttccaatagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaactcc 120  Q
    ||||||||| || || | |||||||| ||||| ||||| ||||||||||||||||| ||||||||| ||||||||||| |||  |||| ||||||||||     
T  11487119 tgtttccaaaagatgggcacaacctgttatattaattttttctatgcaaggaaggtggctaggcaaatgtccccttagctcatgacaactatgtaactca 11487020  T
Q  121 ataactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaa 220  Q
    | |  |||||| |||||||||| ||    | |||||||||| || |||||||| ||||||||| |||||||| | ||| ||||||  |||||||||| ||    
T  11487019 agagttctaagacgaggaaaagaaaaaaatttgccttcaaaaggaagccattccttccaattttgcatgttgacaaatgttatacattcaagggatgaaa 11486920  T
Q  221 atggtaggaaggaag 235  Q
    ||||| |||||||||    
T  11486919 atggttggaaggaag 11486905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 44955662 - 44955874
Alignment:
Q  21 tgtttccaatagttgagaacaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgtaactcc 120  Q
    |||||||||||| |||| |||| ||  ||| ||||||||||||||| ||| ||| |  || ||||| |||| |||  |||  | ||||| |||||||  |    
T  44955662 tgtttccaatagatgagcacaatcttttatttcaatttcttctatggaagaaagatgacttggcaagtgtcgcctatgttttggacaatcatgtaacgtc 44955761  T
Q  121 ataactctaagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaa 220  Q
    | || |||||| |||||||||||||  ||  | |||| |||||| | ||| || |||||||||| ||| ||||  | ||| ||| |||||||||| || |    
T  44955762 aaaattctaagacgaggaaaagcaaaattgcttcctttaaagggaatccactccttccaatttgacattttgtgaagtttgatatgctcaagggacggga 44955861  T
Q  221 atggtaggaagga 233  Q
    ||||| |||||||    
T  44955862 atggttggaagga 44955874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 17851018 - 17851125
Alignment:
Q  128 taagtcgaggaaaagcaacttttatgccttcaaagggcagccattcattccaatttggcatgttgtcgaattttatacgctcaagggatggaaatggtag 227  Q
    |||| |||||||||||||  || |||||| ||||||| |||||||| ||||||||||||||||||   ||  ||| || ||||||||| ||||||||| |    
T  17851018 taagacgaggaaaagcaaaattgatgcctacaaagggaagccattccttccaatttggcatgttgcgaaacattaaacactcaagggacggaaatggttg 17851117  T
Q  228 gaaggaag 235  Q
     |||||||    
T  17851118 aaaggaag 17851125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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