View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12375_high_4 (Length: 301)

Name: NF12375_high_4
Description: NF12375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12375_high_4
NF12375_high_4
[»] chr1 (1 HSPs)
chr1 (9-301)||(11003880-11004169)


Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 301
Target Start/End: Complemental strand, 11004169 - 11003880
Alignment:
Q  9 gcattgagaatcctaacccattgggtcaatggccgtataattaataccgagaggagtatttatttagaagaaaggagtgatcatgcataatactcatgca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11004169 gcattgagaatcctaacccattgggtcaatggccgtataattaataccgagaggagtatttatttagaagaaaggagtgatcatgcataatactcatgca 11004070  T
Q  109 ttctaactaaagatctcttacttaattaagggaatgcgagagcttacctatgtacatcaagataaatacggtttccagagcctgtaaactcctccaagtt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||   |||||||||    
T  11004069 ttctaactaaagatctcttacttaattaagggaatgcgagagcttacctatgtacatcaagatagatacggttaccagagcctgtaaa---ctccaagtt 11003973  T
Q  209 tctgcaataacataaacgtaatatgattaacacaaaactaccagttcgtctagtatggatactgttttttgcactattgaactgtatgcaaac 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11003972 tctgcaataacataaacgtaatatgattaacacaaaactaccagttcgtctagtatggatactgttttttgcactattgaactgtatgcaaac 11003880  T

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