View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12375_high_5 (Length: 301)
Name: NF12375_high_5
Description: NF12375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12375_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 33987680 - 33987942
Alignment:
| Q |
1 |
catagttcaagtacaattaaagaaactaagttcaagtatgtcaacacaaactcgattcaagtacacactcaaactcgattcaagcatgtttgatgcaaac |
100 |
Q |
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| T |
33987680 |
catagttcaagtacaattaaagaaactaagttcaagtatgtcaacacaaactcgattcaaatacacactcaaactcgattcaagcatgtttgatgcaaac |
33987779 |
T |
|
| Q |
101 |
ttaatttaagtggagtatgtttttgcaaactaagttcaagtacatttacacaaattcagttcaaatatatttactcaaactagattcaagtatatttaca |
200 |
Q |
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| T |
33987780 |
ttaatttaagtggagtatgtttttgcaaactaagttcaagtacatttacacaaattcagttcaaatatatttactcaaactagattcaagtatatttaca |
33987879 |
T |
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| Q |
201 |
-gaatctttttacactgaggctatttaggatagggttaatagcatcctttttcgttattttat |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33987880 |
tgaatctttttacactgaggctatttaggatagggttaatagcatcctttttcgttattttat |
33987942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 21725944 - 21725878
Alignment:
| Q |
135 |
ttcaagtacatttacacaaattcagttcaaatatatttactcaaactagattcaagtatatttacag |
201 |
Q |
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|||||||||||||| |||||| |||||||||||||||| |||||| ||||||||| ||||||| |
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| T |
21725944 |
ttcaagtacatttatgcaaatttagttcaaatatatttaggtaaactaatttcaagtatgtttacag |
21725878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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