View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12376_high_3 (Length: 300)
Name: NF12376_high_3
Description: NF12376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12376_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 40343429 - 40343161
Alignment:
| Q |
19 |
cttccatcatttcaattcaagcccaaaatgtgaaataaaaacctttggttattttaaccttacactcaaaaataggatttgatctcattctttcttacga |
118 |
Q |
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| T |
40343429 |
cttccatcatttcaattcaaccccaaaatgtgaaataaaaacctttggttattttaaccttacactcaaaaataggacttgatctcattctttcttacga |
40343330 |
T |
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| Q |
119 |
ttgatgcacaaatcaacggcatgcaagatggcaagtatgttacttacatcatgtgacatgttattgtcttgtca--nnnnnnnnattagtataaatcacc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
40343329 |
ttgatgcacaaatcaacggcatgcaagatggcaagtatg----ttacatcatgtgacatgttattgtcttgtcattttttttttattagtagaaatcacc |
40343234 |
T |
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| Q |
217 |
aacnnnnnnncgaaatcaccaacttgggttaagttccaatacccatcatttaaattaacgctcacacaggttc |
289 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40343233 |
aactttttttcgaaatcaccaacttgggttaagttccaatacccatcatttaaattaacgctcacacaagttc |
40343161 |
T |
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