View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12376_high_4 (Length: 273)
Name: NF12376_high_4
Description: NF12376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12376_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 9577378 - 9577314
Alignment:
| Q |
16 |
atgaacataagaaggggttagaaatttaaaaccttaatataactaaacgtttgaacataacataa |
80 |
Q |
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| T |
9577378 |
atgaacataagaaggggttagaaatttaaaaccttaatataactaaacgtttgaacataacataa |
9577314 |
T |
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Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 9577205 - 9577149
Alignment:
| Q |
198 |
gacaactagaagtaaaattaaagaataaaatggatagaagaaattgaagttgttcca |
254 |
Q |
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| T |
9577205 |
gacaactagaagtaaaattaaagaataaaatggatagaagaaattgaagttgttcca |
9577149 |
T |
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