View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12376_high_5 (Length: 215)

Name: NF12376_high_5
Description: NF12376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12376_high_5
NF12376_high_5
[»] chr1 (4 HSPs)
chr1 (108-198)||(45375005-45375095)
chr1 (108-198)||(45390163-45390253)
chr1 (1-48)||(45375155-45375202)
chr1 (1-48)||(45390312-45390359)
[»] chr2 (2 HSPs)
chr2 (108-167)||(39017863-39017922)
chr2 (1-37)||(39017999-39018035)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 45375095 - 45375005
Alignment:
Q  108 tgatggcagaataattgaaagagggaccttgcaatgtattaatttcggttggtgtgcatgccgctgggtccttcttgcagtggttccagtg 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45375095 tgatggcagaataattgaaagagggaccttgcaatgtattaatttcggttggtgtgcatgccgctgggtccttcttgcagtggatccagtg 45375005  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 45390253 - 45390163
Alignment:
Q  108 tgatggcagaataattgaaagagggaccttgcaatgtattaatttcggttggtgtgcatgccgctgggtccttcttgcagtggttccagtg 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45390253 tgatggcagaataattgaaagagggaccttgcaatgtattaatttcggttggtgtgcatgccgctgggtccttcttgcaatggttccagtg 45390163  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 45375202 - 45375155
Alignment:
Q  1 agtaaactacttaattctttgacaaaagatactaacatgcttattaac 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45375202 agtaaactacttaattctttgacaaaagatactaacatgcttattaac 45375155  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 45390359 - 45390312
Alignment:
Q  1 agtaaactacttaattctttgacaaaagatactaacatgcttattaac 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45390359 agtaaactacttaattctttgacaaaagatactaacatgcttattaac 45390312  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 39017922 - 39017863
Alignment:
Q  108 tgatggcagaataattgaaagagggaccttgcaatgtattaatttcggttggtgtgcatg 167  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  39017922 tgatggctgaacaattgaaagagggaccttgcaatgtattaatttcggctggtgtgcatg 39017863  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39018035 - 39017999
Alignment:
Q  1 agtaaactacttaattctttgacaaaagatactaaca 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  39018035 agtaaactacttaattctttgacaaaagatactaaca 39017999  T

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