View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12376_low_1 (Length: 491)
Name: NF12376_low_1
Description: NF12376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12376_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 21 - 475
Target Start/End: Complemental strand, 33440939 - 33440485
Alignment:
| Q |
21 |
caggatctaaatatggtggagaaaatccttcaactctagtctcagttgggaattgatctacatccttgtatgtatcatgtgtgttacttccagctaccca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33440939 |
caggatctaaatatggtggagaaaatccttcaactctagtctcagttgggaattgatctacatccttgtatgtatcatgtgtgttacttccagctaccca |
33440840 |
T |
|
| Q |
121 |
aatttttccattaggaagcaatgctgaagttgaatgatacattcttgatatttgtgttggattcaattgtgtaaacctttgaccctttagtttctctgga |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33440839 |
aatttttccattaggaagcaatgctgaagttgaatgatacattcttgatatttgtgttggattcaattgtgtaaacctttgaccctttagtttctctgga |
33440740 |
T |
|
| Q |
221 |
ctatacaatgctggtgtgaggtttggagtatcagcatcccaccatccagctgttcccctttgtgcaccattgatgaacaaaagttgtccatttgggagga |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33440739 |
ttatacaatgctggtgtgaggtttggagtatcagcatcccaccatccagctgttcccctttgtgcaccattgatgaacaaaagttgtccatttgggagga |
33440640 |
T |
|
| Q |
321 |
ttatacaatctcccattattctccttgatggcatgtcttcagtttcccatctcgcgatttgatccgtgagtaccatcctgatttataaaaacaaaatgtt |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
33440639 |
ttatacaatctcccattattctccttgatggcatgtcttcagtttcccatctcgcgatttgatctgtgattaccatcctgatttataaaaacaaaatgtt |
33440540 |
T |
|
| Q |
421 |
agaatctaagaaacactggacacgacactgatatcaataaatttaagtaatcaca |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33440539 |
agaatctaagaaacactggacacgacactgatatcaataaatttaagtaatcaca |
33440485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 29 - 354
Target Start/End: Complemental strand, 43344102 - 43343777
Alignment:
| Q |
29 |
aaatatggtggagaaaatccttcaactctagtctcagttgggaattgatctacatccttgtatgtatcatgtgtgttacttccagctacccaaatttttc |
128 |
Q |
| |
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||||| || ||||| ||| |||||||||||||||||||||| | | ||| ||| || || || ||||||||||| |||||| |||||||| || | |
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| T |
43344102 |
aaataaggaggagagaatgcttcaactctagtctcagttggatacttatcattatctttataagtttcatgtgtgttgcttccactaacccaaatcttac |
43344003 |
T |
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| Q |
129 |
cattaggaagcaatgctgaagttgaatgatacattcttgatatttgtgttggattcaattgtgtaaacctttgaccctttagtttctctggactatacaa |
228 |
Q |
| |
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|||||||||||| || |||||||||||||||||||||| ||||| || || ||| ||||||| |||||| | || |||||| ||||||| |
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| T |
43344002 |
cattaggaagcacagccgaagttgaatgatacattcttgcaatttgagtaggcatcatcgccttaaacctcaaacccttaggcttatctggattatacaa |
43343903 |
T |
|
| Q |
229 |
tgctggtgtgaggtttggagtatcagcatcccaccatccagctgttcccctttgtgcaccattgatgaacaaaagttgtccatttgggaggattatacaa |
328 |
Q |
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| |||||| ||||| ||||||||||||||| ||| ||| || ||||||||||||||||||||| |||| ||||||||||||||| | | | |
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| T |
43343902 |
cacaggtgtgtaatttggctggtcagcatcccaccatgcagatgtaccgtattgtgcaccattgatgaacaatagttctccatttgggaggataagagca |
43343803 |
T |
|
| Q |
329 |
tctcccattattctccttgatggcat |
354 |
Q |
| |
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|||||||| |||||||||||||||| |
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|
| T |
43343802 |
tctcccatggttctccttgatggcat |
43343777 |
T |
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Back To:
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