View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12376_low_2 (Length: 340)
Name: NF12376_low_2
Description: NF12376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12376_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 32547597 - 32547910
Alignment:
| Q |
17 |
caactcatgctttattacaacaaatttgaaggggtgttagaagaatttcctaatgcttctatgtcattattagagatgcttgatttaagcggaaacaatt |
116 |
Q |
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| T |
32547597 |
caactcatgctttattacaacaaatttgaaggggtgttagaagaatttcctaatgcttctatgtcattattagagatgcttgatttaagtggaaacaatt |
32547696 |
T |
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| Q |
117 |
ttgaagggtctattcctatgtctaccttcaaactcaaaagacttcgtttgcttcaacttaccaaaaacaagttcaatggtactatacaacttgatgtctt |
216 |
Q |
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| T |
32547697 |
ttgaagggtctattcctatgtctaccttcaaactcaaaagacttcgtttgcttcaacttaccaaaaacaagttcaatggtactatacaacttgatgtctt |
32547796 |
T |
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| Q |
217 |
cggtaagcttcaaaatttaaccacacttgatcttggacacaacaacttgtttgttgatgcaaatataaaggatgaaagtgaagcatcatcatttcctagt |
316 |
Q |
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| T |
32547797 |
tggtaagcttcaaaatttaaccacacttgatcttggacacaacaacttgtttgttgatgcaaatataaaggatggaagtgaagcatcatcatttcctagt |
32547896 |
T |
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| Q |
317 |
ttgaaaactctctg |
330 |
Q |
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| T |
32547897 |
ttgaaaactctctg |
32547910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 14558223 - 14558483
Alignment:
| Q |
19 |
actcatgctttattacaacaaatttgaaggggtgttagaagaatttcctaatgcttctat-gtcattattagagatgcttgatttaagcggaaacaattt |
117 |
Q |
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| T |
14558223 |
actcatgctctattacaacaaatttgatattaatttggaagaaattccaaatgcttctttagtcatcattagagatggttgatttaagtggcaacaattt |
14558322 |
T |
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| Q |
118 |
tgaagggtctattcctatgtctaccttcaaactcaaaagacttcgtttgcttcaacttaccaaaaacaagttcaatggtactatacaacttgatgtcttc |
217 |
Q |
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| T |
14558323 |
tgaagggcctattcctatgtctatcttcaaactcaaaagactccttttgcttcaactttcctaaaacaagttcaatgttacaatacagtttgatgtgatt |
14558422 |
T |
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| Q |
218 |
ggtaagcttcaaaatttaaccacacttgatcttggacacaacaacttgtttgttgatgcaa |
278 |
Q |
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| T |
14558423 |
ggaaggctacaaaatttgggtacacttgatcttgcacataacaacttgtttgttgatgcaa |
14558483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 27033903 - 27033972
Alignment:
| Q |
24 |
tgctttattacaacaaatttgaaggggtgttagaagaatttcctaatgcttctatgtcattattagagat |
93 |
Q |
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| T |
27033903 |
tgctttattacaacatatttgatggtatattagaagaaattccaaatgcttctttgtcattatcagagat |
27033972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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