View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12377_high_1 (Length: 404)

Name: NF12377_high_1
Description: NF12377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12377_high_1
NF12377_high_1
[»] chr7 (24 HSPs)
chr7 (21-398)||(26186553-26186930)
chr7 (22-392)||(26128879-26129243)
chr7 (34-391)||(26088106-26088457)
chr7 (34-391)||(26111894-26112245)
chr7 (33-388)||(19103022-19103371)
chr7 (21-398)||(26155514-26155870)
chr7 (35-392)||(26191590-26191941)
chr7 (19-278)||(26179392-26179651)
chr7 (39-278)||(26251174-26251416)
chr7 (39-278)||(26242726-26242968)
chr7 (39-278)||(26297774-26298016)
chr7 (345-392)||(26260501-26260548)
chr7 (145-397)||(26302244-26302490)
chr7 (345-398)||(26204514-26204567)
chr7 (345-398)||(26224151-26224204)
chr7 (228-278)||(26278217-26278267)
chr7 (346-391)||(26179713-26179758)
chr7 (345-397)||(26208040-26208092)
chr7 (345-391)||(26227601-26227647)
chr7 (345-391)||(26251477-26251523)
chr7 (321-391)||(26278300-26278371)
chr7 (321-388)||(26243004-26243072)
chr7 (34-68)||(26227320-26227354)
chr7 (222-280)||(26227484-26227542)
[»] chr4 (1 HSPs)
chr4 (34-397)||(44903574-44903934)


Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 21 - 398
Target Start/End: Original strand, 26186553 - 26186930
Alignment:
Q  21 agtaacactatcttggggatcaaatcatggagtgtaggaccagtttcatcattggctaacaaggatgatgaaaagaagggcaataggggacacatggagg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26186553 agtaacactatcttggggatcaaatcatggagtgtaggaccagtttcatcattggctaacaaggatgatgaaaagaagggtaataggggacacatggagg 26186652  T
Q  121 agcttgcaaaagaggaagagtggctaaattggcttaactcaaagcaaattgagtccgtactgtatttaagttttggaagtgtaactaggcttgataatga 220  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26186653 agcttgcagaagaggaagagtggctaaattggcttaactcaaagcaaattgagtccgtactgtatttaagttttggaagtgtaactaggcttgataatgc 26186752  T
Q  221 tcagatcgtagaaattgcacacggtcttgaaaattcagatcataattttatctgggttgtaacttgtaaggaaaaaggaaagagatgagagtgaaaacac 320  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26186753 tcagattgtagaaattgcacacggtcttgaaaattcagatcataattttatctgggttgtaacttataaggaaaaaggaaagagatgagagtgaaaacac 26186852  T
Q  321 tttcctacaagattttgagaaataatgaaagaaagcaaaaagggctatatcatatggaattgggcaccacaggttctg 398  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  26186853 tttcctacaagattttgagaaagaatgaaagaaagcaaaaagggatatatcatatggaattgggcaccacagcttctg 26186930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 22 - 392
Target Start/End: Original strand, 26128879 - 26129243
Alignment:
Q  22 gtaacactatcttggggatcaaatcatggagtgtaggaccagtttcatcattggctaacaaggatgatgaaaagaagggcaataggggacacatggagga 121  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| |||||    
T  26128879 gtaacactaccttggggatcaaatcttggagtgtaggaccagtttcatcatgggctaacaaggatgatgaaaacaaggggaataggggacacatagagga 26128978  T
Q  122 gcttgcaaaagaggaagagtggctaaattggcttaactcaaagcaaattgagtccgtactgtatttaagttttggaagtgtaactaggcttgataatgat 221  Q
    ||||| |||||||| ||| ||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||| |    
T  26128979 gcttggaaaagaggcagactggttaaattggcttaactcaaagcaaaatgagtccgtactgtatgtaagttttggaagtctaactaggcttgataatgct 26129078  T
Q  222 cagatcgtagaaattgcacacggtcttgaaaattcagatcataattttatctgggttgtaacttgtaaggaaaaaggaaagagatgagagtgaaaacact 321  Q
    ||||| |||||||||||||||||||| |||||||||| |||||||||||| ||||       |||||||||||||||| || |||||||||||||||| |    
T  26129079 cagattgtagaaattgcacacggtctcgaaaattcaggtcataattttatatggg-------ttgtaaggaaaaaggagagcgatgagagtgaaaacaat 26129171  T
Q  322 ttcctacaagattttga-gaaataatgaaagaaagcaaaaagggctatatcatatggaattgggcaccacag 392  Q
    ||||| ||||||||||| ||||  ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26129172 ttccttcaagattttgaggaaaggatgaaagaaagaaaaaagggctatatcatatggaattgggcaccacag 26129243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 34 - 391
Target Start/End: Original strand, 26088106 - 26088457
Alignment:
Q  34 tggggatcaaatcatggagtgtaggaccagtttcatcattggctaacaaggatgatgaaaagaagggcaataggggacacatggaggagcttgcaaaaga 133  Q
    ||||||||||||| ||||||||||| ||||||||| | | | | |||||| |||||||||| |||| ||||||||||||||| |||||||||| ||||||    
T  26088106 tggggatcaaatcttggagtgtagggccagtttcagcttggaccaacaagaatgatgaaaaaaaggccaataggggacacatagaggagcttggaaaaga 26088205  T
Q  134 ggaagagtggctaaattggcttaactcaaagcaaattgagtccgtactgtatttaagttttggaagtgtaactaggcttgataatgatcagatcgtagaa 233  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||||||| ||| |||||||||||||| |||||| ||||||    
T  26088206 ggaagagtggctaaattggcttaactcaaaggaaaatgagtccgtattgtatgtaagttttggaagtctaattaggcttgataatgctcagattgtagaa 26088305  T
Q  234 attgcacacggtcttgaaaattcagatcataattttatctgggttgtaacttgtaaggaaaaaggaaagagatgagagtgaaaacactttcctacaagat 333  Q
    |||||||||||||| |||||||||| |||||||||||||||||       ||||||||||| | || || ||||||||||||||||||||||| ||||||    
T  26088306 attgcacacggtctcgaaaattcaggtcataattttatctggg-------ttgtaaggaaatatgagagggatgagagtgaaaacactttccttcaagat 26088398  T
Q  334 tttga-gaaataatgaaagaaagcaaaaagggctatatcatatggaattgggcaccaca 391  Q
    ||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  26088399 tttgaggaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggcaccaca 26088457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 34 - 391
Target Start/End: Original strand, 26111894 - 26112245
Alignment:
Q  34 tggggatcaaatcatggagtgtaggaccagtttcatcattggctaacaaggatgatgaaaagaagggcaataggggacacatggaggagcttgcaaaaga 133  Q
    ||||||||||||| ||||||||||| ||||||||| | | | | |||||| |||||||||| |||| ||||||||||||||| |||||||||| ||||||    
T  26111894 tggggatcaaatcttggagtgtagggccagtttcagcttggaccaacaagaatgatgaaaaaaaggccaataggggacacatagaggagcttggaaaaga 26111993  T
Q  134 ggaagagtggctaaattggcttaactcaaagcaaattgagtccgtactgtatttaagttttggaagtgtaactaggcttgataatgatcagatcgtagaa 233  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||||||| ||| |||||||||||||| |||||| ||||||    
T  26111994 ggaagagtggctaaattggcttaactcaaaggaaaatgagtccgtattgtatgtaagttttggaagtctaattaggcttgataatgctcagattgtagaa 26112093  T
Q  234 attgcacacggtcttgaaaattcagatcataattttatctgggttgtaacttgtaaggaaaaaggaaagagatgagagtgaaaacactttcctacaagat 333  Q
    |||||||||||||| |||||||||| |||||||||||||||||       ||||||||||| | || || ||||||||||||||||||||||| ||||||    
T  26112094 attgcacacggtctcgaaaattcaggtcataattttatctggg-------ttgtaaggaaatatgagagggatgagagtgaaaacactttccttcaagat 26112186  T
Q  334 tttga-gaaataatgaaagaaagcaaaaagggctatatcatatggaattgggcaccaca 391  Q
    ||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  26112187 tttgaggaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggcaccaca 26112245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 33 - 388
Target Start/End: Complemental strand, 19103371 - 19103022
Alignment:
Q  33 ttggggatcaaatcatggagtgtaggaccagtttcatcattggctaacaaggatgatgaaaagaagggcaataggggacacatggaggagcttgcaaaag 132  Q
    |||||||||||||| ||| ||||||||||||||||| |   ||||||||||||||||||||| |||| || |||||| ||| | |||||| | | |||||    
T  19103371 ttggggatcaaatcttggtgtgtaggaccagtttcagctagggctaacaaggatgatgaaaaaaaggccagtagggggcacgtagaggagatcggaaaag 19103272  T
Q  133 aggaagagtggctaaattggcttaactcaaagcaaattgagtccgtactgtatttaagttttggaagtgtaactaggcttgataatgatcagatcgtaga 232  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||| ||||| |||||||||||||| ||||||||||||| ||||||||||| |||||    
T  19103271 aggaagagtggctaaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggaagtctaactaggcttgaaaatgatcagattgtaga 19103172  T
Q  233 aattgcacacggtcttgaaaattcagatcataattttatctgggttgtaacttgtaaggaaaaaggaaagagatgagagtgaaaacactttcctacaaga 332  Q
    ||| |||||||||||||||||||||| |||||||||||||||||||       ||||||||||| || ||||||||||||||||||| ||| ||||||||    
T  19103171 aatcgcacacggtcttgaaaattcaggtcataattttatctgggtt-------gtaaggaaaaatgagagagatgagagtgaaaacagttttctacaaga 19103079  T
Q  333 ttttga-gaaataatgaaagaaagcaaaaagggctatatcatatggaattgggcacc 388  Q
    |||||| | ||  |||||||||||||||||||| |||||||||||||||||||||||    
T  19103078 ttttgaggcaaggatgaaagaaagcaaaaagggatatatcatatggaattgggcacc 19103022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 21 - 398
Target Start/End: Original strand, 26155514 - 26155870
Alignment:
Q  21 agtaacactatcttggggatcaaatcatggagtgtaggaccagtttcatcattggctaacaaggatgatgaaaagaagggcaataggggacacatggagg 120  Q
    |||||||||| | ||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |                 
T  26155514 agtaacactaccatggggatcaaaacttggagtgtaggaccagtttcatcatgggctaacaaggatgatgaaaagaagggcaatacg------------- 26155600  T
Q  121 agcttgcaaaagaggaagagtggctaaattggcttaactcaaagcaaattgagtccgtactgtatttaagttttggaagtgtaactaggcttgataatga 220  Q
      |||| ||||||||  |||||| |||||||||||||| ||||||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||||     
T  26155601 --cttggaaaagaggccgagtggttaaattggcttaacacaaagcaaaatgagtccgtattgtatgtaagttttggaagtctaactaggcttgataatgc 26155698  T
Q  221 tcagatcgtagaaattgcacacggtcttgaaaattcagatcataattttatctgggttgtaacttgtaaggaaaaaggaaagagatgagagtgaaaacac 320  Q
    |||||| |||||||||||||||||||| |||||||||| |||||||||||||||||       |||||||||||||||| || |||||||||||||||||    
T  26155699 tcagattgtagaaattgcacacggtctcgaaaattcaggtcataattttatctggg-------ttgtaaggaaaaaggagagcgatgagagtgaaaacac 26155791  T
Q  321 tttcctacaagattttga-gaaataatgaaagaaagcaaaaagggctatatcatatggaattgggcaccacaggttctg 398  Q
    |||||| ||||||||||| ||||  |||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  26155792 tttccttcaagattttgaggaaaggatgaaagaaagcaaaaagggatatatcatatggaattgggcaccacagcttctg 26155870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 35 - 392
Target Start/End: Original strand, 26191590 - 26191941
Alignment:
Q  35 ggggatcaaatcatggagtgtaggaccagtttcatcattggctaacaaggatgatgaaaagaagggcaataggggacacatggaggagcttgcaaaagag 134  Q
    |||||||||||| ||||||||||||||||||||| | | |||||| ||||||||||||||||||||  ||| ||| ||||| ||||||  || ||||| |    
T  26191590 ggggatcaaatcttggagtgtaggaccagtttcagcttgggctaaaaaggatgatgaaaagaagggtgataaggggcacatagaggagaatggaaaagtg 26191689  T
Q  135 gaagagtggctaaattggcttaactcaaagcaaattgagtccgtactgtatttaagttttggaagtgtaactaggcttgataatgatcagatcgtagaaa 234  Q
    | |||||||||||||||||||||||||||||||| |||||| ||||| ||| |||| ||||||||| ||||||||||   | ||| |||| | |||||||    
T  26191690 gcagagtggctaaattggcttaactcaaagcaaaatgagtctgtactttatgtaagctttggaagtttaactaggctaactcatgctcagcttgtagaaa 26191789  T
Q  235 ttgcacacggtcttgaaaattcagatcataattttatctgggttgtaacttgtaaggaaaaaggaaagagatgagagtgaaaacactttcctacaagatt 334  Q
    ||||||| || ||||||||||||| |||||||||||||||||       ||||||||||||| || |  |||||||||||||||| ||||||||||||||    
T  26191790 ttgcacatgggcttgaaaattcaggtcataattttatctggg-------ttgtaaggaaaaatgatatggatgagagtgaaaacagtttcctacaagatt 26191882  T
Q  335 ttga-gaaataatgaaagaaagcaaaaagggctatatcatatggaattgggcaccacag 392  Q
    |||| | ||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26191883 ttgagggaaggatgaaagaaagcaaaaagggctatatcatatggaattgggcaccacag 26191941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 26179392 - 26179651
Alignment:
Q  19 taagtaacactatcttggggatcaaatcatggagtgtaggaccagtttcatcattggctaacaaggatgatgaaaagaagggcaataggggacacatgga 118  Q
    ||||||||||||   ||||||||||| | ||||||||||||||||||||| | | | |||||||||||| |||||| |||| ||| ||||||||||| ||    
T  26179392 taagtaacactacaatggggatcaaaacttggagtgtaggaccagtttcagcttggactaacaaggatggtgaaaaaaaggccaaaaggggacacataga 26179491  T
Q  119 ggagcttgcaaaagaggaagagtggctaaattggcttaactcaaagcaaattgagtccgtactgtatttaagttttggaagtgtaactaggcttgataat 218  Q
    ||| |||| |||||||||||| |||||||||||||||||||||||||||| |||||| ||| | ||| |||||||||| ||  |   |||| ||    ||    
T  26179492 ggaacttggaaaagaggaagaatggctaaattggcttaactcaaagcaaaatgagtctgtattatatgtaagttttggtagccttgttaggtttccgcat 26179591  T
Q  219 gatcagatcgtagaaattgcacacggtcttgaaaattcagatcataattttatctgggtt 278  Q
    | |||| | ||||||||||| ||||| |||||||| |||| ||| |||||||||||||||    
T  26179592 gctcagcttgtagaaattgcgcacgggcttgaaaactcaggtcaaaattttatctgggtt 26179651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 39 - 278
Target Start/End: Original strand, 26251174 - 26251416
Alignment:
Q  39 atcaaatcatggagtgtaggaccagtttcatcattggctaacaaggatgatgaaaagaagggcaataggggacacatggagga--gctt-gcaaaagagg 135  Q
    ||||||||||||||||| |||||||||||  | | ||||||||||||||||||||  ||||  |||||||||||||||||| |  |||| | |||| ||     
T  26251174 atcaaatcatggagtgtcggaccagtttctgcctgggctaacaaggatgatgaaagaaaggcgaataggggacacatggagaaaagcttaggaaaacaga 26251273  T
Q  136 aagagtggctaaattggcttaactcaaagcaaattgagtccgtactgtatttaagttttggaagtgtaactaggcttgataatgatcagatcgtagaaat 235  Q
     ||| | ||| |||||||||||||| ||||||| |||||| ||| ||||| |||||||||| ||  | |||||||||  | ||| |||| | ||||||||    
T  26251274 cagaattgcttaattggcttaactcgaagcaaaatgagtcagtattgtatgtaagttttggcagccttactaggcttcctcatgctcagcttgtagaaat 26251373  T
Q  236 tgcacacggtcttgaaaattcagatcataattttatctgggtt 278  Q
    |||||| || ||||||||||||| |||||||||||||||||||    
T  26251374 tgcacatgggcttgaaaattcaggtcataattttatctgggtt 26251416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 278
Target Start/End: Original strand, 26242726 - 26242968
Alignment:
Q  39 atcaaatcatggagtgtaggaccagtttcatcattggctaacaaggatgatgaaaagaagggc-aataggggacacatggag--gagc-ttgcaaaagag 134  Q
    ||||||||||||||||| |||||||||||| | | |||||||||||||||| ||||||| ||| ||||||||||||| ||||   ||| | | |||| ||    
T  26242726 atcaaatcatggagtgtcggaccagtttcagcctgggctaacaaggatgat-aaaagaaaggcgaataggggacacacggagaaaagcataggaaaacag 26242824  T
Q  135 gaagagtggctaaattggcttaactcaaagcaaattgagtccgtactgtatttaagttttggaagtgtaactaggcttgataatgatcagatcgtagaaa 234  Q
      ||| | ||||||||||||||||   ||||||| |||||| ||| ||||| |||||||||| ||    |||||| ||  | ||| |||| | |||||||    
T  26242825 acagaattgctaaattggcttaacctgaagcaaaatgagtctgtattgtatgtaagttttggcagccagactaggtttcctcatgctcagcttgtagaaa 26242924  T
Q  235 ttgcacacggtcttgaaaattcagatcataattttatctgggtt 278  Q
    |||| ||||| ||||||||||||| |||||||||||||||||||    
T  26242925 ttgctcacgggcttgaaaattcaggtcataattttatctgggtt 26242968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 39 - 278
Target Start/End: Original strand, 26297774 - 26298016
Alignment:
Q  39 atcaaatcatggagtgtaggaccagtttcatcattggctaacaaggatgatgaaaagaagggcaataggggacacatggagga--gctt-gcaaaagagg 135  Q
    ||||| ||||||||||| |||||||||||| | | ||||||||||||||||||||  ||||  |||||||||||||| ||| |  |||| | |||| |      
T  26297774 atcaagtcatggagtgtcggaccagtttcagcctgggctaacaaggatgatgaaagaaaggctaataggggacacattgagaaaagcttaggaaaacata 26297873  T
Q  136 aagagtggctaaattggcttaactcaaagcaaattgagtccgtactgtatttaagttttggaagtgtaactaggcttgataatgatcagatcgtagaaat 235  Q
     ||| | ||||||||||||||| || ||| ||| ||| || ||| ||||| |||||||||| ||  | |||||||||  | ||| |||| | ||||||||    
T  26297874 cagaattgctaaattggcttaattcgaaggaaaatgaatctgtattgtatgtaagttttggcagctttactaggcttccttatgctcagcttgtagaaat 26297973  T
Q  236 tgcacacggtcttgaaaattcagatcataattttatctgggtt 278  Q
    ||  || || ||||||||||||| |||||||||||||||||||    
T  26297974 tgttcatgggcttgaaaattcaggtcataattttatctgggtt 26298016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 345 - 392
Target Start/End: Original strand, 26260501 - 26260548
Alignment:
Q  345 atgaaagaaagcaaaaagggctatatcatatggaattgggcaccacag 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26260501 atgaaagaaagcaaaaagggctatatcatatggaattgggcaccacag 26260548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 397
Target Start/End: Original strand, 26302244 - 26302490
Alignment:
Q  145 taaattggcttaactcaaagcaaattgagtccgtactgtatttaagttttggaagtgtaactaggcttgataatgatcagatcgtagaaattgcacacgg 244  Q
    |||||||||||||||||||||||| |||||| ||| ||||| |||||||||| ||  |   | ||| |  | ||| |||| | |||||||||||||||||    
T  26302244 taaattggcttaactcaaagcaaaatgagtctgtattgtatgtaagttttggcagccttgtttggcatcctcatgctcagcttgtagaaattgcacacgg 26302343  T
Q  245 tcttgaaaattcagatcataattttatctgggttgtaacttgtaaggaaaaaggaaagagatgagagtgaaaacactttcctacaagattttgag-aaat 343  Q
     ||||||||||||| ||||| |||||| ||||| |||        | ||| | || ||| |||||  |||| |   |||||| ||||  |||||| |||     
T  26302344 gcttgaaaattcaggtcatagttttatttgggtcgtac-------gaaaatatgatagaaatgaggatgaagaaggtttcctgcaagtatttgaggaaag 26302436  T
Q  344 aatgaaagaaagcaaaaagggctatatcatatggaattgggcaccacaggttct 397  Q
     ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||    
T  26302437 gatgaaagaaagcaaaaaaggctatatcatatggaattgggcaccgcagcttct 26302490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 345 - 398
Target Start/End: Original strand, 26204514 - 26204567
Alignment:
Q  345 atgaaagaaagcaaaaagggctatatcatatggaattgggcaccacaggttctg 398  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  26204514 atgaaagaaagcaaaaagggctatatcatatggaattgggccccacagcttctg 26204567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 345 - 398
Target Start/End: Original strand, 26224151 - 26224204
Alignment:
Q  345 atgaaagaaagcaaaaagggctatatcatatggaattgggcaccacaggttctg 398  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  26224151 atgaaagaaagcaaaaagggctatatcatatggaattgggccccacagcttctg 26224204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 26278217 - 26278267
Alignment:
Q  228 gtagaaattgcacacggtcttgaaaattcagatcataattttatctgggtt 278  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  26278217 gtagaaattgcacacgggcttgaaaattcaggtcataattttatctgggtt 26278267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 391
Target Start/End: Original strand, 26179713 - 26179758
Alignment:
Q  346 tgaaagaaagcaaaaagggctatatcatatggaattgggcaccaca 391  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  26179713 tgaaagaaagcaaaaagggctatatcatatggaattgggcatcaca 26179758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 26208040 - 26208092
Alignment:
Q  345 atgaaagaaagcaaaaagggctatatcatatggaattgggcaccacaggttct 397  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  26208040 atgaaagaaaacaaaaagggatatatcatatggaattgggcaccacagcttct 26208092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 26227601 - 26227647
Alignment:
Q  345 atgaaagaaagcaaaaagggctatatcatatggaattgggcaccaca 391  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  26227601 atgaaagaaaacaaaaagggatatatcatatggaattgggcaccaca 26227647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 26251477 - 26251523
Alignment:
Q  345 atgaaagaaagcaaaaagggctatatcatatggaattgggcaccaca 391  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||    
T  26251477 atgaaagaaagcaacaagggctatatcatctggaattgggcaccaca 26251523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 391
Target Start/End: Original strand, 26278300 - 26278371
Alignment:
Q  321 tttcctacaagattttgagaaata-atgaaagaaagcaaaaagggctatatcatatggaattgggcaccaca 391  Q
    |||||| ||||| |||||||||   |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  26278300 tttcctgcaagaatttgagaaaaggatgaaagaaagcaacaagggctacatcatatgggattgggcaccaca 26278371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 26243004 - 26243072
Alignment:
Q  321 tttcctacaagattttgag-aaataatgaaagaaagcaaaaagggctatatcatatggaattgggcacc 388  Q
    |||||| ||||| |||||| |||  |||||||||||||| |||||||||||||||||| | ||||||||    
T  26243004 tttcctgcaagaatttgaggaaaggatgaaagaaagcaacaagggctatatcatatgggactgggcacc 26243072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 26227320 - 26227354
Alignment:
Q  34 tggggatcaaatcatggagtgtaggaccagtttca 68  Q
    ||||||||||| |||||||||||||||||||||||    
T  26227320 tggggatcaaagcatggagtgtaggaccagtttca 26227354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 26227484 - 26227542
Alignment:
Q  222 cagatcgtagaaattgcacacggtcttgaaaattcagatcataattttatctgggttgt 280  Q
    ||||| |||||||| || || |||||||||||||||| ||||||||| || ||||||||    
T  26227484 cagattgtagaaatagctcatggtcttgaaaattcaggtcataatttcatttgggttgt 26227542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 34 - 397
Target Start/End: Original strand, 44903574 - 44903934
Alignment:
Q  34 tggggatcaaatcatggagtgtaggaccagtttcatcattggctaacaaggatgatgaaaagaagggcaataggggacacatggaggagc---ttgcaaa 130  Q
    ||||||| || || ||||||||||||||||||||| | | ||||||||||| |||||||  ||||||||||||||||||| ||||| ||    ||| |||    
T  44903574 tggggattaagtcttggagtgtaggaccagtttcaacttgggctaacaagggtgatgaacggaagggcaataggggacacgtggagaagaacgttgaaaa 44903673  T
Q  131 agaggaagagtggctaaattggcttaactcaaagcaaattgagtccgtactgtatttaagttttggaagtgtaactaggcttgataatgatcagatcgta 230  Q
    ||||  ||| | |||||||||||||||||||||||||| |||||| ||  ||||| |||||||||||||  | |||| ||||  | ||| |||| | |||    
T  44903674 agagagagaattgctaaattggcttaactcaaagcaaaatgagtctgtgttgtatgtaagttttggaagccttactaagctttttcatgctcagcttgta 44903773  T
Q  231 gaaattgcacacggtcttgaaaattcagatcataattttatctgggttgtaacttgtaaggaaaaaggaaagagatgagagtgaaaacactttcctacaa 330  Q
    ||||||||||| || |||||||| |||| |||||||||||||||||       ||||||||||||| || ||||| ||||  ||  |   |||||| |||    
T  44903774 gaaattgcacatgggcttgaaaagtcaggtcataattttatctggg-------ttgtaaggaaaaatgatagagacgagaacgaggaaggtttcctgcaa 44903866  T
Q  331 gattttga-gaaataatgaaagaaagcaaaaagggctatatcatatggaattgggcaccacaggttct 397  Q
    |||||||| ||||   ||||||||||||| ||||||||||||||||||||||||||||| ||| ||||    
T  44903867 gattttgaggaaagggtgaaagaaagcaacaagggctatatcatatggaattgggcaccgcagcttct 44903934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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