View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12377_high_2 (Length: 379)
Name: NF12377_high_2
Description: NF12377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12377_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 8910355 - 8910010
Alignment:
| Q |
1 |
aagcataatgaaattatgggtaaggccatattctttgttgattcaaatttttcgtccaaatactaacgagggttgagtcaaacagaaaggttaattattc |
100 |
Q |
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| T |
8910355 |
aagcataatgaaattatgggtaaggccatattctttgttgattcaaatttttcgtccaaatactaacgagggttgagtcaaacagaaaggtta----ttc |
8910260 |
T |
|
| Q |
101 |
ctccagtgtggcgaaccacgggttgaactttgttgatagagacatatacgttcattgtgtgacgctttcttgagcaagattgactccgtatgagaagacc |
200 |
Q |
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| T |
8910259 |
ctccagtgtggcgaaccacgagttgaactttgtcgatagagacatatacgttcattgtgtgacgctttcttgagcaagattgactccgtatgagaagacc |
8910160 |
T |
|
| Q |
201 |
aatgagttcatccaaaataagtttcatccaaatatttgaattaataccactgatctttgtaaatcttgttcaactgatttgagctaagagttaaagaagt |
300 |
Q |
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| T |
8910159 |
aatgagttcatccaaaataagtttcatccaaatatttgaattaataccactgatctttgtaaatcttgttcaactgatttgagctaagagttaaagaagt |
8910060 |
T |
|
| Q |
301 |
tgaaaaagttaatgattcaaggttcaaaccctagtgaaggagaagatact |
350 |
Q |
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| T |
8910059 |
tgaaaaagttaatgattcaaggttcaaaccctagtgaaggagaagatact |
8910010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 15165256 - 15165298
Alignment:
| Q |
270 |
tcaactgatttgagctaagagttaaagaagttgaaaaagttaa |
312 |
Q |
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| T |
15165256 |
tcaactgatttgagcttagagttaacgaagttgaaagagttaa |
15165298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 297
Target Start/End: Complemental strand, 11660575 - 11660546
Alignment:
| Q |
268 |
gttcaactgatttgagctaagagttaaaga |
297 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
11660575 |
gttcaactgatttgagctaagagttaaaga |
11660546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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