View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12377_high_4 (Length: 351)

Name: NF12377_high_4
Description: NF12377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12377_high_4
NF12377_high_4
[»] chr8 (10 HSPs)
chr8 (17-351)||(1962906-1963240)
chr8 (18-351)||(2015190-2015523)
chr8 (33-351)||(2018588-2018906)
chr8 (18-195)||(2432951-2433128)
chr8 (33-351)||(2008191-2008509)
chr8 (33-351)||(2011806-2012124)
chr8 (33-334)||(1968523-1968824)
chr8 (65-174)||(2004843-2004952)
chr8 (70-174)||(1964747-1964851)
chr8 (211-351)||(2004989-2005129)
[»] chr1 (1 HSPs)
chr1 (60-351)||(5902085-5902376)
[»] chr3 (1 HSPs)
chr3 (290-351)||(18189870-18189931)


Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 351
Target Start/End: Complemental strand, 1963240 - 1962906
Alignment:
Q  17 tcagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1963240 tcagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcatctgt 1963141  T
Q  117 cattgcttctataggacccttttcaatttccaggaagctattaattagtacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1963140 cattgcttctataggacccttttcaatttccaggaagctattaataagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaa 1963041  T
Q  217 gattgacttgatctatcttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcac 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1963040 gattgacttgatctatcttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcac 1962941  T
Q  317 atgaagtttccttatccaacttgagcaaatggaag 351  Q
    |||||||||||||||||||||||||||||||||||    
T  1962940 atgaagtttccttatccaacttgagcaaatggaag 1962906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 2015190 - 2015523
Alignment:
Q  18 cagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtc 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2015190 cagacattcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtc 2015289  T
Q  118 attgcttctataggacccttttcaatttccaggaagctattaattagtacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaag 217  Q
    | ||||||||||||||| ||||| ||||| | ||| |||||||| || | ||||||||||||||| ||||||||||||| |||||| ||| | |||||||    
T  2015290 agtgcttctataggaccgttttcgatttctatgaaactattaataagaataccatcaaaaagacgcaatttttcaacaccttggagtaagtatttgtaag 2015389  T
Q  218 attgacttgatctatcttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcaca 317  Q
    ||||||| ||||||||||||||||| |||| || |||||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||| ||    
T  2015390 attgactggatctatcttgagctagctcaaaaagatcccgaccatgaatcggaacactacctggtatttgaataggcccaggaagatctctgtactcgca 2015489  T
Q  318 tgaagtttccttatccaacttgagcaaatggaag 351  Q
    ||| ||||||||||| ||||||||||||| ||||    
T  2015490 tgatgtttccttatctaacttgagcaaatagaag 2015523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 33 - 351
Target Start/End: Original strand, 2018588 - 2018906
Alignment:
Q  33 attagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctatagga 132  Q
    |||| |||||||||| ||| | ||| | ||||||||||| |||||||||||||| |||  | ||||  ||||||  || ||||| | |||||||||||||    
T  2018588 attatcatcatcacccgatttggttggcgtttggataattggtccaacagcataaacatcagggttgccacttctgtcttctgtgagtgcttctatagga 2018687  T
Q  133 cccttttcaatttccaggaagctattaattagtacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctat 232  Q
    || ||||||||||| |||||||||||||| || | ||||||||||||||||||||||||||||| ||  || ||||| ||||||||||||||||||||||    
T  2018688 cctttttcaatttctaggaagctattaataagaataccatcaaaaagacggaatttttcaacacgttcaagtaagaatttgtaagattgacttgatctat 2018787  T
Q  233 cttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatc 332  Q
    |||||||| |||||| || |||| |||||||||| || ||||| ||||||||||||||||||||| |||||||| |||||| |||||| ||||||||||     
T  2018788 cttgagcttggtcaacaagatcctgaccatgaattggtacacagcctggtatttgaataggctctagaagatctttgtactgacatgatgtttccttatt 2018887  T
Q  333 caacttgagcaaatggaag 351  Q
    |||||||||||||| ||||    
T  2018888 caacttgagcaaatagaag 2018906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 2433128 - 2432951
Alignment:
Q  18 cagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtc 117  Q
    ||||||||| ||| |||||||||||||  ||||  |||||| ||| ||||| ||||||||||||| |||||||||| | |||||||||||||| ||||||    
T  2433128 cagacactccaacatattagcatcatcgtcagaacttgttattgtctggatgatgggtccaacaggatacacaagaggattttcacttccttcatctgtc 2433029  T
Q  118 attgcttctataggacccttttcaatttccaggaagctattaattagtacaccatcaaaaagacggaatttttcaaca 195  Q
    | ||||| |||||||||| |||| ||||| | |||||||||||  || |||||||||| || |||| |||||| ||||    
T  2433028 agtgcttttataggacccctttccatttctaagaagctattaacaagaacaccatcaacaaaacggtattttttaaca 2432951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 33 - 351
Target Start/End: Original strand, 2008191 - 2008509
Alignment:
Q  33 attagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctatagga 132  Q
    ||||||||||||||||||| |||||  ||||| |||||| |||||||||| ||||||  || |||| |||| ||| || ||| |||||||   || ||||    
T  2008191 attagcatcatcaccagattttgtttctgtttcgataataggtccaacaggatacactggagggttgtcacctccctcctctttcattgcacttagagga 2008290  T
Q  133 cccttttcaatttccaggaagctattaattagtacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctat 232  Q
    ||| | || ||||| |||||||||||||  || |||||||||  |  ||  ||   || |||| || |||| |||   ||||||| ||||||||||||||    
T  2008291 cccatctctatttctaggaagctattaacaagaacaccatcagcagaacttaaaagtttaacaaatgggaggaagtgtttgtaagcttgacttgatctat 2008390  T
Q  233 cttgagctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttat 331  Q
    ||||||||| | |||||||| ||||  ||||| |  || ||||||||||||||||  ||||||||| | | |||||| ||||||||||| ||||||| ||    
T  2008391 cttgagctatgctcaagaaa-tccctgccatggagtggtacacaacctggtatttttataggctctagtatatctctatactcacatgatgtttcctcat 2008489  T
Q  332 ccaacttgagcaaatggaag 351  Q
    ||| |||  |||||| ||||    
T  2008490 ccagcttaggcaaatagaag 2008509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 351
Target Start/End: Original strand, 2011806 - 2012124
Alignment:
Q  33 attagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctatagga 132  Q
    ||||||||||||| ||||   ||||| ||| ||||| ||||||||||||| ||| |||  | ||||  |||||||||| ||||||| ||| | ||||||     
T  2011806 attagcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggt 2011905  T
Q  133 cccttttcaatttccaggaagctattaattagtacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctat 232  Q
    ||| |||| ||||| | |||||||||||  || |||||||||  || ||  ||  ||| ||||  ||| || ||| | ||||||| ||||||||||||||    
T  2011906 cccatttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtatttgtaagcttgacttgatctat 2012005  T
Q  233 cttgagcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttat 331  Q
    ||||| ||| ||||||| | |||||  ||||| |  || || || || |||| ||  ||||||||||| |||||||||||||||||||  ||||||| ||    
T  2012006 cttgaactatggtcaag-agatccctgccatggagtggtacgcagcccggtactttgataggctctgggagatctctgtactcacatgttgtttcctcat 2012104  T
Q  332 ccaacttgagcaaatggaag 351  Q
    |||||||  |||||| ||||    
T  2012105 ccaacttaggcaaatagaag 2012124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 33 - 334
Target Start/End: Complemental strand, 1968824 - 1968523
Alignment:
Q  33 attagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctatagga 132  Q
    ||||||||||||||| ||  |||||  |||||||||||| |||||||||| ||||||  || |||| |||||||| || ||| |||||||   ||||||     
T  1968824 attagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcattgcacttataggt 1968725  T
Q  133 cccttttcaatttccaggaagctattaattagtacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctat 232  Q
    ||| | || | |||||||||||||||||  |  |||||||||  || ||  ||   || || |  | |||| |||   ||||||  ||||||||||||||    
T  1968724 cccatctccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatctat 1968625  T
Q  233 cttgagctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttat 331  Q
    ||||||||| | |||||| | ||||  ||||| || || ||||| ||||||||||  ||||||||||| | |||||| ||||||||||| ||||||| ||    
T  1968624 cttgagctacgctcaagaga-tccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcat 1968526  T
Q  332 cca 334  Q
    |||    
T  1968525 cca 1968523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 2004843 - 2004952
Alignment:
Q  65 ggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattag 164  Q
    |||| ||||||||||||| ||||||| || |||||||||||||||| ||| |||||||   |||||||||| | || ||||| |||||||||||||  ||    
T  2004843 ggatgatgggtccaacaggatacacaggagggttttcacttccttcatctttcattgcacttataggacccatctccatttctaggaagctattaacaag 2004942  T
Q  165 tacaccatca 174  Q
     |||||||||    
T  2004943 aacaccatca 2004952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 174
Target Start/End: Complemental strand, 1964851 - 1964747
Alignment:
Q  70 atgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattagtacac 169  Q
    ||||||||||||| |||||||  | ||||  |||||||||| ||||||  ||||| |||||| ||| |||| ||||| | |||||||||||  || ||||    
T  1964851 atgggtccaacaggatacacagaagggttgccacttccttcctctgtcggtgcttttataggtcccatttccatttctaagaagctattaacaagaacac 1964752  T
Q  170 catca 174  Q
    |||||    
T  1964751 catca 1964747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 351
Target Start/End: Original strand, 2004989 - 2005129
Alignment:
Q  211 ttgtaagattgacttgatctatcttgagctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctg 309  Q
    ||||||| ||||||||| |||||||||| | || ||| || | ||||  ||||| || || ||||||||||||||||  |||||| |||| | |||||      
T  2004989 ttgtaagcttgacttgacctatcttgagttgggctcatgaga-tccctgccatggattggtacacaacctggtatttttataggcactggtatatctcca 2005087  T
Q  310 tactcacatgaagtttccttatccaacttgagcaaatggaag 351  Q
    ||||||||||| ||||| | |||||||||  |||||| ||||    
T  2005088 tactcacatgatgtttcttcatccaacttaggcaaatagaag 2005129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 60 - 351
Target Start/End: Complemental strand, 5902376 - 5902085
Alignment:
Q  60 tgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctatta 159  Q
    |||||||||||||||||||| ||  ||||||  | ||||  |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  5902376 tgtttggataatgggtccaatagggtacacagcagggttaccacttccttcttctgtcagtgcttctataggacctttttcaatttccaggaagctatta 5902277  T
Q  160 attagtacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttgagctaggtcaagaaaatcccgac 259  Q
    || ||||  ||||||| |  || |||| ||| || || |||||| ||||| ||||||||||| || ||||||||||||||| || |||  | ||||||||    
T  5902276 ataagtatgccatcaacagaacagaatcttttaatacgttggagtaagaatttgtaagattggctcgatctatcttgagcttgggcaacgagatcccgac 5902177  T
Q  260 catgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaag 351  Q
    || |||| || ||||||||||||  ||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||    
T  5902176 cacgaattggtacacaacctggtgcttgaataggttctggcagatctctgtactcacatgatgtttccttatccaatttgagcaaatagaag 5902085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 351
Target Start/End: Complemental strand, 18189931 - 18189870
Alignment:
Q  290 taggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaag 351  Q
    |||||||||| |||| ||||||||||||||  ||||||| |||||||||  |||||| ||||    
T  18189931 taggctctggtagatttctgtactcacatgttgtttcctcatccaacttaggcaaatagaag 18189870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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