View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12377_high_5 (Length: 334)
Name: NF12377_high_5
Description: NF12377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12377_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 2 - 323
Target Start/End: Complemental strand, 34411423 - 34411102
Alignment:
| Q |
2 |
taacctcaaactacctagagtgaaggatgtgatggtcaatggtcatacagtgaaggtgaagttctgcgatacttgcttgctatatcgtccaccacgcgct |
101 |
Q |
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| T |
34411423 |
taacctcaaactacctagagtgaaggatgtgatggtcaatggtcatacagtgaaggtgaagttctgcgatacttgcttgctatatcgtccaccacgcgct |
34411324 |
T |
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| Q |
102 |
tctcattgctctatttgcaataactgtgttcaaaagtttgatcatcattgcccttgggttggtcaatgtattggatcagtaagttcgatcaacattgcta |
201 |
Q |
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| T |
34411323 |
tctcattgctctatttgcaataactgtgttcaaaagtttgatcatcattgcccttgggttggtcaatgtattggatcagtaagttcgatcaacattgcta |
34411224 |
T |
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| Q |
202 |
tgtctgcgtttttcggatatgtttacttttgaaccaggtttgctgatctaagaaaatctaacacagttcctcctcctatcatgtttctttcagcgaaact |
301 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34411223 |
tgtctgcgtttttcgtatatgtttacttttgaaccaggtttgctgatctaagaaaatctaacacagttcctcctcctatcatgtttctttcagcgaaact |
34411124 |
T |
|
| Q |
302 |
atccattcttcataatgttcat |
323 |
Q |
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|||||||||||||||||||||| |
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| T |
34411123 |
atccattcttcataatgttcat |
34411102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 34401556 - 34401432
Alignment:
| Q |
39 |
aatggtcatacagtgaaggtgaagttctgcgatacttgcttgctatatcgtccaccacgcgcttctcattgctctatttgcaataactgtgttcaaaagt |
138 |
Q |
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| T |
34401556 |
aatggtcatacggtgaaagtgaagttctgtgatacatgcttgctatatcgaccgcctcgtacttctcattgttctatatgcaacaactgtgtccagagat |
34401457 |
T |
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| Q |
139 |
ttgatcatcattgcccttgggttgg |
163 |
Q |
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| T |
34401456 |
ttgatcatcactgcccctgggttgg |
34401432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 13589556 - 13589485
Alignment:
| Q |
105 |
cattgctctatttgcaataactgtgttcaaaagtttgatcatcattgcccttgggttggtcaatgtattgga |
176 |
Q |
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|||||||| |||||||| || |||||| || |||||||||||||||||||||||||| ||||| |||||| |
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| T |
13589556 |
cattgctccatttgcaacaattgtgttgaacgttttgatcatcattgcccttgggttggccaatgcattgga |
13589485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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