View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12377_high_9 (Length: 310)

Name: NF12377_high_9
Description: NF12377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12377_high_9
NF12377_high_9
[»] chr7 (1 HSPs)
chr7 (17-310)||(28638941-28639236)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 28639236 - 28638941
Alignment:
Q  17 ctgatatggacaaaattaactgacgttgtggtcgctgannnnnnnataaggcactcataactttattgacaattttcagattatgtcacactgactcact 116  Q
    |||||||||||||||| |||||||||||||||||| ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28639236 ctgatatggacaaaataaactgacgttgtggtcgcggatttttttataaggcactcataactttattgacaattttcagattatgtcacactgactcact 28639137  T
Q  117 tatagttccttgtgctactgattttgcttttactgtaatnnnnnnnntaaaataa--ttatgcttgctgcaaaatagagtttggcagtgataccaaaacc 214  Q
    |||||||||||||||||||||||||||||||||||||||         |||| ||  |||||||||||||||||||||||||||||||||||||||||||    
T  28639136 tatagttccttgtgctactgattttgcttttactgtaataaaaaaaaaaaaaaaaaattatgcttgctgcaaaatagagtttggcagtgataccaaaacc 28639037  T
Q  215 acctagatgtatttctttgtcagttgttttattcaccttttcaaaagtagagattctttttggaccattccaaaaaataataatttatttgtttgc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28639036 acctagatgtatttctttgtcagttgttttattcaccttttcaaaagtagagattctttttggaccattccaaaaaataataatttatttgtttgc 28638941  T

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