View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12378_high_4 (Length: 439)
Name: NF12378_high_4
Description: NF12378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12378_high_4 |
 | |
|
| [»] scaffold0027 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 44477116 - 44476816
Alignment:
| Q |
20 |
cgtagaatactctttttcacttatattttagtcaaacatatgtatgcacttttttcctcttgaaattgagtccgactaatactattttcataaaagaaaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44477116 |
cgtagaatactctttttcacttatattttagtcaaacatatgtatgcactttttttctcttgaaattgagtccgactaatactattttcataaaagaaaa |
44477017 |
T |
|
| Q |
120 |
attgcttagttggattagtcaatgacagagctataaagcaattgactatagctcttaattaactaagaacaagaatattcttagtaaaagacatgtgaat |
219 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44477016 |
attgcttagttggattagtcaataacagagctataaagcatttgactatagctcttaattaactaagaacaagaatattcttagtaaaagacatgtgaat |
44476917 |
T |
|
| Q |
220 |
tgtactcaaagctctcaaaatctagtttatctcatttatcgtcgtccatgttgaaaatatttcctctcaatatctttgtataactcatactatatcacca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44476916 |
tgtactcaaagctctcaaaatctagtttctctcatttatcgttgttcatgttgaaaatatttcctctcaatatctttgtataactcatactatatcacca |
44476817 |
T |
|
| Q |
320 |
c |
320 |
Q |
| |
|
| |
|
|
| T |
44476816 |
c |
44476816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 423
Target Start/End: Complemental strand, 44476789 - 44476751
Alignment:
| Q |
385 |
ttcactacacttgagaaatttgacgttgccgctgtaaac |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44476789 |
ttcactacacttgagaaatttgacgttgccgctgtaaac |
44476751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 12190 - 12140
Alignment:
| Q |
188 |
acaagaatattcttagtaaaagacatgtgaattgtactcaaagctctcaaa |
238 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
12190 |
acaagaatattcttagccaaagacatgcagattgtactcaaagctctcaaa |
12140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 386
Target Start/End: Original strand, 31645652 - 31645713
Alignment:
| Q |
324 |
ttgacttgtattttttacaagttaaaattgcattcttccattaaatttttctatgccaaactt |
386 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||| ||| ||| |||||||||||||||| ||||||| |
|
|
| T |
31645652 |
ttgatttgaattttctacaagttaaaattg-attattcaattaaatttttctatgtcaaactt |
31645713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 26683000 - 26682952
Alignment:
| Q |
322 |
tcttgacttgtattttttacaagttaaaattgcattcttccattaaattt |
371 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| |||||||||| |||||| |
|
|
| T |
26683000 |
tcttgacttggattttttacaagtcaaaattg-attcttccatgaaattt |
26682952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University