View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12378_high_6 (Length: 295)
Name: NF12378_high_6
Description: NF12378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12378_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 32669905 - 32670146
Alignment:
| Q |
17 |
cagagattagagcaccaaatcaaaaaacaagaatttggttaggttcttattcaactgcagaagctgcagctagagcttatgatgctgcacttttatgcct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32669905 |
cagagattagagcaccaaatcaaaaaacaagaatttggttaggttcttattcaactgcagaagctgcagctagagcttatgatgctgcacttttatgcct |
32670004 |
T |
|
| Q |
117 |
taaaggttcatcatctgcttcaaatctcaatttccctttaacatcatcatcttcacattacaatattcctcaagatatgtctccgaaatcaattcaaaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32670005 |
taaaggttcatcatctgcttcaaatctcaatttccctttaacatcatcatcttcacattacaatattcctcaagatatgtctccaaaatcaattcaaaga |
32670104 |
T |
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| Q |
217 |
gttgctgcagctgccgcgaatagtttcattgacaacaataat |
258 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||| |
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| T |
32670105 |
gtagctgcagctgccgcgaatagtttcatcgacaacaataat |
32670146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 24174058 - 24174161
Alignment:
| Q |
25 |
agagcaccaaatcaaaaaacaagaatttggttaggttcttattcaactgcagaagctgcagctagagcttatgatgctgcacttttatgccttaaaggtt |
124 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |
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| T |
24174058 |
agagcaccaaatcaaaaaacaagaatatggttaggttcttattcaactgcagaagctgctgcaagagcctatgatgctgcacttttatgccttaaaggtt |
24174157 |
T |
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| Q |
125 |
catc |
128 |
Q |
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|||| |
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| T |
24174158 |
catc |
24174161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 5681526 - 5681575
Alignment:
| Q |
16 |
gcagagattagagcaccaaatcaaaaaacaagaatttggttaggttctta |
65 |
Q |
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||||||||||||| |||||| ||| | |||||||||||||||||||||| |
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| T |
5681526 |
gcagagattagagaaccaaacaaaagatcaagaatttggttaggttctta |
5681575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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