View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12378_low_1 (Length: 1101)
Name: NF12378_low_1
Description: NF12378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12378_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 705; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 13 - 760
Target Start/End: Complemental strand, 40993716 - 40992962
Alignment:
| Q |
13 |
actataactcttccataaggctaagtaatgattttgaacttcagcatcatcaaatggagcaattgaagcaaaactaataacgttgttattttttagagtt |
112 |
Q |
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| T |
40993716 |
actataactcttccataaggctaagtaatgattttgaacttcagcatcatcaaatggagcaattgaagcaaaactaataacgttgttatttttgagagtt |
40993617 |
T |
|
| Q |
113 |
gtaattaaccttccaatgcattcagcaaatgtattaggatctccgatgaaatgttcataatcaatgtcaattccatctaaattatatgtcttgattatgc |
212 |
Q |
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| T |
40993616 |
gtaattaaccttccaatgcattcagcaaatgtattaggatctccgatgaaatgttcataatcaacgtcaattccatctaaattatacgtcttgattatgc |
40993517 |
T |
|
| Q |
213 |
ttgtgagtgaagaaaccgcgtttgaaacccaagaatcaatcgaagatggaatgaagttaacggggtcgccttgaacagtgtctccaccaagactaagagc |
312 |
Q |
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| T |
40993516 |
ttgtgagtgaagaaaccgcgtttgaaacccaagaatcaatcgaagatggaatgaagttaacggggtcgccttgaacggtgtctccaccaagactaagagc |
40993417 |
T |
|
| Q |
313 |
tactttgacatttggattttgatttttgatggaagagacttcggaagggctaagattttgagtgtcccaaaagatgttgaagtttccatttgtgggagaa |
412 |
Q |
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| T |
40993416 |
tactttgacatttggattttgatttttgatgaaagagacttcggaagggctaagattttgagtgtcccaaaagatgttgaagtttccatttgtgggagaa |
40993317 |
T |
|
| Q |
413 |
ggaggagatgaagtatcatagtcaatagcaaaggataaaatgaagtggaaattgacatttgggtttataggaacatctgaaaatttgacacctttgaatt |
512 |
Q |
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| T |
40993316 |
ggaggagatgaagtatcatagtcaatagcaaaggataaaatgaagtggaaattgacatttgggtttataggaacatctgaaaatttgacacctttgaatt |
40993217 |
T |
|
| Q |
513 |
gagctccaatgtattctcggaataggtttgagtttgcagctaggatagttgatgcaaacaaggaagtcgttagaattaaaaggataaagcatggtttggg |
612 |
Q |
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| T |
40993216 |
gagctccaatgtattctcggaataggtttgagtttgcagctaggatagttgatgcaaacaaggaagtcgttagaattaaaaggataaagcatggtttggg |
40993117 |
T |
|
| Q |
613 |
aatgtgaagttccatt-------gtgatattgctactttagagttatgctagatattgtacaaggaaatgatgcactatatgcgcttaaatactagtact |
705 |
Q |
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| T |
40993116 |
aatgtgaagttccattgtgaattgtgatattgctactttagagttaggctagatattgtacaaggaaatgatgcactatatgcgcttaaatactagtact |
40993017 |
T |
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| Q |
706 |
agtttatagaaaggggctaaaagtaatatcagcagtgacacaataatttggaaga |
760 |
Q |
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| T |
40993016 |
agtttatagaaaggggctaaaagtaatatcagcagtgacacaataatttggaaga |
40992962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 882 - 1086
Target Start/End: Complemental strand, 40992221 - 40992003
Alignment:
| Q |
882 |
caataagagatctaattcccaactaaaatggttaagaaattaagatatctcagttgt--------------tttggcaaattttcannnnnnnnaaacat |
967 |
Q |
| |
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| T |
40992221 |
caataagagatcgaattcccaactaaaatggttaagaaattaagatatctcagttgtcaaaatataataggtttggcaaatttttattttttttaaacat |
40992122 |
T |
|
| Q |
968 |
gtgaccaagtcaatccttgaccatgtagagtgtggcttgaatattttgcctcttcgtcacgtaactcatcccatccagatgtcgcctcaattgaattttc |
1067 |
Q |
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| T |
40992121 |
gtgaccaagtcaatccttgaccatgtagagtgtggcttgaatattttgcctctttgtcacgtaactcatcccatccagatgtcgcctcaattgaattttc |
40992022 |
T |
|
| Q |
1068 |
ctattatttatatttccac |
1086 |
Q |
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| T |
40992021 |
ctattatttacatttccac |
40992003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 3e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 16 - 536
Target Start/End: Complemental strand, 29059195 - 29058675
Alignment:
| Q |
16 |
ataactcttccataaggctaagtaatgattttgaacttcagcatcatcaaatggagcaattgaagcaaaactaataacgttgttattttttagagttgta |
115 |
Q |
| |
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|||||||||||||||||||||||| ||| ||||||||| | |||||||||| |||||||| ||||||||| | || || || |||||| ||| | |
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| T |
29059195 |
ataactcttccataaggctaagtagtgactttgaacttgatcatcatcaaaaggagcaatagaagcaaaagtgatgactccatttgcttttagggttttg |
29059096 |
T |
|
| Q |
116 |
attaaccttccaatgcattcagcaaatgtattaggatctccgatgaaatgttcataatcaatgtcaattccatctaaattatatgtcttgattatgcttg |
215 |
Q |
| |
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|||||||| |||||||| || ||||| |||||||| | ||| ||||||| || || |||||||| || || ||||| || || |||||||| ||| |
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| T |
29059095 |
attaacctaccaatgcactctgcaaaggtattagggtttcctttgaaatgctcgtagtcaatgtcgatcccgtctaagttgtactctttgattatttttg |
29058996 |
T |
|
| Q |
216 |
tgagtgaagaaaccgcgtttgaaacccaagaatcaatcgaagatggaatgaagttaacggggtcgccttgaacagtgtctccaccaagactaagagctac |
315 |
Q |
| |
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|||| |||||||| ||||| || | ||| || |||| |||||||||| ||||| | | | | |||| |||| |||| || || |||||||||||||| |
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| T |
29058995 |
tgagcgaagaaactgcgttagagagccatgattcaaccgaagatggatcgaagtaagcatagccaccttcaacactgtcacctcctagactaagagctac |
29058896 |
T |
|
| Q |
316 |
tttgacatttggattttgatttttgatggaagagacttcggaagggctaagattttgagtgtcccaaaagatgttgaagtttccatttgtgggagaagga |
415 |
Q |
| |
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|| |||||||||||||| | |||||||| || |||| |||||| |||| |||| ||||||||||||||||| || |||||||| ||||| |||||| |
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| T |
29058895 |
cttaacatttggattttggctcttgatggatgaaacttgagaagggttaaggttttttgtgtcccaaaagatgttaaattttccattggtgggtgaagga |
29058796 |
T |
|
| Q |
416 |
ggagatgaagtatcatagtcaatagcaaaggataaaatgaagtggaaattgacatttgggtttataggaacatctgaaaatttgacacctttgaattgag |
515 |
Q |
| |
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| |||||| || || ||||| ||| | ||||| | |||||||||||| | ||||| |||||||||||||||||||| || |||| ||| ||| || |
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| T |
29058795 |
gaagatgatgtgtcgtagtcgataccgaaggagagaatgaagtggaattcaacattagggtttataggaacatctgagaacttgatgttgttggattcag |
29058696 |
T |
|
| Q |
516 |
ctccaatgtattctcggaata |
536 |
Q |
| |
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||||||||||||||| ||||| |
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| T |
29058695 |
ctccaatgtattctctgaata |
29058675 |
T |
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Back To:
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