View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12378_low_2 (Length: 947)

Name: NF12378_low_2
Description: NF12378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12378_low_2
NF12378_low_2
[»] chr2 (10 HSPs)
chr2 (14-305)||(18929235-18929526)
chr2 (16-305)||(26650839-26651130)
chr2 (22-305)||(17402729-17403013)
chr2 (35-250)||(25520385-25520601)
chr2 (66-250)||(31404020-31404205)
chr2 (178-295)||(19878972-19879090)
chr2 (66-250)||(24543870-24544054)
chr2 (141-250)||(29891239-29891348)
chr2 (82-225)||(20478255-20478396)
chr2 (118-250)||(28760593-28760724)
[»] chr7 (13 HSPs)
chr7 (16-301)||(20145813-20146098)
chr7 (18-305)||(2546914-2547198)
chr7 (34-305)||(14987006-14987278)
chr7 (34-305)||(15416617-15416889)
chr7 (22-250)||(17600539-17600766)
chr7 (56-305)||(24832402-24832657)
chr7 (16-250)||(3743380-3743620)
chr7 (63-250)||(4173426-4173615)
chr7 (139-250)||(10649207-10649318)
chr7 (140-199)||(5531725-5531784)
chr7 (82-199)||(18046386-18046501)
chr7 (82-127)||(14961170-14961215)
chr7 (82-127)||(15390642-15390687)
[»] chr8 (15 HSPs)
chr8 (16-305)||(28371034-28371324)
chr8 (21-305)||(9218079-9218367)
chr8 (66-249)||(9286315-9286498)
chr8 (19-145)||(10660970-10661095)
chr8 (107-250)||(23540207-23540351)
chr8 (104-250)||(16600591-16600737)
chr8 (138-300)||(10661748-10661911)
chr8 (77-219)||(13110204-13110345)
chr8 (174-250)||(24577332-24577408)
chr8 (77-217)||(18672125-18672261)
chr8 (82-250)||(25095053-25095223)
chr8 (107-154)||(26136195-26136242)
chr8 (82-172)||(22713661-22713751)
chr8 (82-250)||(27123570-27123736)
chr8 (82-124)||(9006931-9006973)
[»] chr5 (15 HSPs)
chr5 (42-305)||(19217915-19218177)
chr5 (56-305)||(20064397-20064653)
chr5 (56-303)||(20060802-20061056)
chr5 (107-305)||(20713228-20713426)
chr5 (107-305)||(23210042-23210240)
chr5 (56-301)||(20058571-20058824)
chr5 (138-298)||(23379314-23379474)
chr5 (126-305)||(25951334-25951513)
chr5 (82-250)||(17167249-17167417)
chr5 (82-238)||(19923956-19924112)
chr5 (66-199)||(24878356-24878489)
chr5 (82-238)||(19926683-19926839)
chr5 (82-220)||(17987482-17987619)
chr5 (191-250)||(21165282-21165342)
chr5 (18-49)||(24878288-24878319)
[»] chr3 (16 HSPs)
chr3 (23-301)||(24698999-24699275)
chr3 (16-304)||(15686859-15687148)
chr3 (22-250)||(26010836-26011067)
chr3 (35-250)||(13428700-13428914)
chr3 (43-250)||(4769742-4769949)
chr3 (18-250)||(4765677-4765916)
chr3 (107-305)||(7148790-7148988)
chr3 (16-250)||(4832504-4832740)
chr3 (99-305)||(9033415-9033622)
chr3 (110-305)||(29614529-29614724)
chr3 (72-250)||(23378488-23378668)
chr3 (107-247)||(16242928-16243069)
chr3 (76-199)||(27304424-27304547)
chr3 (82-124)||(13409834-13409876)
chr3 (76-150)||(8737234-8737308)
chr3 (76-150)||(9089472-9089546)
[»] chr6 (14 HSPs)
chr6 (16-247)||(22397545-22397777)
chr6 (107-305)||(16177304-16177502)
chr6 (25-225)||(17524797-17524998)
chr6 (795-922)||(17365400-17365527)
chr6 (107-303)||(1177150-1177349)
chr6 (111-305)||(15830026-15830220)
chr6 (82-247)||(17947842-17948007)
chr6 (66-219)||(14762938-14763090)
chr6 (66-199)||(18713709-18713842)
chr6 (56-305)||(31126082-31126351)
chr6 (734-775)||(17365558-17365599)
chr6 (82-124)||(25945847-25945889)
chr6 (68-169)||(28712360-28712461)
chr6 (551-628)||(17365687-17365764)
[»] chr4 (7 HSPs)
chr4 (16-287)||(11361595-11361866)
chr4 (23-305)||(9409083-9409370)
chr4 (66-248)||(16675086-16675269)
chr4 (107-169)||(5358040-5358102)
chr4 (149-247)||(8140832-8140930)
chr4 (82-250)||(4697470-4697638)
chr4 (82-124)||(18558473-18558515)
[»] chr1 (12 HSPs)
chr1 (61-305)||(20146169-20146420)
chr1 (42-250)||(11013817-11014027)
chr1 (72-250)||(33103021-33103201)
chr1 (66-238)||(36571655-36571826)
chr1 (66-236)||(22607834-22608003)
chr1 (85-250)||(20150422-20150588)
chr1 (110-250)||(13202052-13202192)
chr1 (82-247)||(17615274-17615439)
chr1 (723-778)||(20839758-20839813)
chr1 (109-199)||(22620063-22620153)
chr1 (187-250)||(13232737-13232801)
chr1 (66-138)||(20866221-20866293)
[»] scaffold0555 (1 HSPs)
scaffold0555 (61-305)||(5599-5851)
[»] scaffold0264 (1 HSPs)
scaffold0264 (16-302)||(20793-21077)
[»] scaffold0016 (1 HSPs)
scaffold0016 (138-298)||(12991-13151)
[»] scaffold0337 (2 HSPs)
scaffold0337 (66-238)||(17221-17392)
scaffold0337 (66-225)||(4546-4703)
[»] scaffold0002 (1 HSPs)
scaffold0002 (86-250)||(374113-374275)
[»] scaffold0142 (2 HSPs)
scaffold0142 (97-250)||(20572-20725)
scaffold0142 (795-880)||(12426-12511)
[»] scaffold1102 (1 HSPs)
scaffold1102 (114-250)||(859-996)
[»] scaffold0795 (1 HSPs)
scaffold0795 (258-304)||(5989-6035)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 4e-90; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 18929235 - 18929526
Alignment:
Q  14 cctgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcatta 113  Q
    |||||||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18929235 cctgtggcgtatttcgacataaaa-aggttttaaaagcaaagtaaaggcattaagtttaaattgcagaaacttaaaggaaaggtaaaatacaatgcatta 18929333  T
Q  114 aaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgattt 213  Q
    ||||||||||| |||||| ||||| |||||||||||||||||| ||| | ||||||| | |||||||||||| |||||||||||| | ||||||||||||    
T  18929334 aaaataaaggtggttcgataaatcttttacatacattctttatgactatcttctctcacgccggtacttcgagtgttttagaattctatataggtgattt 18929433  T
Q  214 gcgacccgtttt-tctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 305  Q
    || |||| ||||  || |||||||||  ||||||| || ||| | |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  18929434 gcaacccattttccctttggaaaactactatttatgcatagaaaataacttggaaagaaactaatcccacgatcaacactccttccatgtaga 18929526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 26650839 - 26651130
Alignment:
Q  16 tgtggcgtctttcgacagaaaaaagg-ttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaa 114  Q
    |||||| ||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||||||||||| ||||     
T  26650839 tgtggcttctttcgacagaaaaaagggttttaaaagcaaagtaaagacatgaagtttaaattgcagaaacttaaaggaaaggtaaaatacaatggattat 26650938  T
Q  115 aaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttg 214  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||  |||| |||||| |||||||||||| |||||||||||||||    
T  26650939 aaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgcgtcggtgcttcgagtgttttagaattctgtataggtgatttg 26651038  T
Q  215 cgacccgtttt-tctatggaaaactcttatttatacaaag-atactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 305  Q
    ||||| |||||  |||||||||||||||||||||||| || | | |||| | ||||||||| |||||||| || | ||||| |||||||||||    
T  26651039 cgacctgttttccctatggaaaactcttatttatacatagaaaaataac-tagaaagaaaccaatcccacgattagcactcattccatgtaga 26651130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 22 - 305
Target Start/End: Original strand, 17402729 - 17403013
Alignment:
Q  22 gtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaa 121  Q
    ||||||| ||| ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  17402729 gtctttcaacaaaaaaaaggttttaaaagcaaagtaaaggcaataagtttaaattgcagaaacttaaaggaaatataaaatacaatgcattaaaaataaa 17402828  T
Q  122 ggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccg 221  Q
    ||| |||  |||||||||||||||||||||||||| ||| ||||||||||  ||||||||| || |||||||||||| | |||||||||||||||||| |    
T  17402829 ggtggttatacaaatcctttacatacattctttataacttttttctctcgtgccggtacttagagtgttttagaattctatataggtgatttgcgacctg 17402928  T
Q  222 tttttc-tatggaaaactcttatttataca-aagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 305  Q
    |||| | |||||| ||||  |||||||||| |||| | |||| |||||| |    |||||||| |||||||||||||||| |||||    
T  17402929 ttttccttatggagaactactatttatacataagaaaataac-tggaaaaagcataatcccacgatcaacactccttccacgtaga 17403013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 35 - 250
Target Start/End: Complemental strand, 25520601 - 25520385
Alignment:
Q  35 aaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaa 134  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||| || |||||| |||| |||| |||| |||||||||||||||||  |||||||||    
T  25520601 aaaaaggttttaaaagcaaagtaaaggcattaagttaaaattgcagaaagttaaagaaaagataaactacattgcattaaaaataaaggaggttcgacaa 25520502  T
Q  135 atcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatgga 233  Q
    | |||||||||||||| | ||| ||||||||||||||| |||  ||||||| ||||||| |||| |||||||||||||||| |||||||||  |||||||    
T  25520501 aacctttacatacattatgtatgactcttttctctcgcgccgtcacttcgagtgttttataattctgtataggtgatttgcaacccgttttccctatgga 25520402  T
Q  234 aaactcttatttataca 250  Q
    ||||| |||||||||||    
T  25520401 aaactattatttataca 25520385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 66 - 250
Target Start/End: Complemental strand, 31404205 - 31404020
Alignment:
Q  66 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatccttt-acatacattctttatcactcttt 164  Q
    ||||||||| ||||| ||||||||| ||||||||| | || ||||||||||  |||||| |||||||||||| ||| ||||||||||| ||| |||||||    
T  31404205 aagtttaaaatgcagaaacttaaagaaaaggtaaattgcattgcattaaaataaaaggtggttcgacaaatcattttacatacattctgtataactcttt 31404106  T
Q  165 tctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttataca 250  Q
    |||||||| |||||||||||| |||||||||| |||  ||| |||||||||||||| ||||   |||||||||||  ||||||||||    
T  31404105 tctctcgcgccggtacttcgagtgttttagaa-tttcaataagtgatttgcgacccattttcaatatggaaaactactatttataca 31404020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 178 - 295
Target Start/End: Original strand, 19878972 - 19879090
Alignment:
Q  178 tacttcgaatgttttagaattttgtataggtgatttgcgacccgttttt-ctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaa 276  Q
    |||||| | |||||||||||| ||||||||||||||||||||||||||| ||||||||||||  ||||| |||| ||| | ||| |||||||||||| ||    
T  19878972 tacttctagtgttttagaattctgtataggtgatttgcgacccgtttttcctatggaaaactactatttttacatagaaaataagttggaaagaaactaa 19879071  T
Q  277 tcccacaatcaacactcct 295  Q
    |||||| ||||||||||||    
T  19879072 tcccacgatcaacactcct 19879090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 66 - 250
Target Start/End: Original strand, 24543870 - 24544054
Alignment:
Q  66 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 165  Q
    ||||| ||||||||  |||||  ||||||  |||| | || |||||||||||||||||| |||| | |||||||||||||| ||| | ||| | ||||||    
T  24543870 aagttaaaattgcaaaaacttgtaggaaaaataaattgcattgcattaaaaataaaggtggttccagaaatcctttacatatattatgtataaatctttt 24543969  T
Q  166 ctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgttttt-ctatggaaaactcttatttataca 250  Q
    ||||||| ||| |||||||| |||| |  || ||| |||| |||||||| ||||||||||| ||||||||||||  ||||||||||    
T  24543970 ctctcgcgccgatacttcgagtgttgt-caaatttctataagtgatttgtgacccgtttttcctatggaaaactactatttataca 24544054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 250
Target Start/End: Complemental strand, 29891348 - 29891239
Alignment:
Q  141 tacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttttc-tatggaaaactc 239  Q
    |||||||||| | ||| | ||||||||||||| ||| ||||| || ||||||| || ||| |||| ||||| ||||||||||||||| |||||| ||||     
T  29891348 tacatacattttgtataaatcttttctctcgcgccgatactttgagtgttttataa-tttctataagtgatctgcgacccgtttttcatatggacaacta 29891250  T
Q  240 ttatttataca 250  Q
     ||||||||||    
T  29891249 ctatttataca 29891239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 20478396 - 20478255
Alignment:
Q  82 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcc-tttacatacattctttatcactcttttctctcgctccggtac 180  Q
    |||||||||||||    |||| |||| |||||||| ||||||| || | |||||||  |||||||||||||| ||| |||| |||| ||||| ||||||     
T  20478396 aacttaaaggaaaacataaatgcaattcattaaaattaaaggtggt-ctacaaatcagtttacatacattctgtataactcgtttccctcgcgccggtag 20478298  T
Q  181 ttcgaatgttttagaattttgtataggtgatttgcgacccgtttt 225  Q
    || || |||| ||||||| ||||||  ||||||||||||| ||||    
T  20478297 tttgagtgttgtagaattatgtata--tgatttgcgacccatttt 20478255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 250
Target Start/End: Complemental strand, 28760724 - 28760593
Alignment:
Q  118 taaaggtagttcgacaaatcc-tttacatacattctttatcactcttttctctcg-ctccggtacttcgaatgttttagaattttgtataggtgatttgc 215  Q
    ||||||| ||||||||||||  |||||||||||||| ||| |||||||||||| | | ||||||||||||  ||  ||||||||  ||||  ||||||||    
T  28760724 taaaggtggttcgacaaatcagtttacatacattctatatgactcttttctctagacgccggtacttcga--gtgctagaattt--tataaatgatttgc 28760629  T
Q  216 gacccgtttttc-tatggaaaactcttatttataca 250  Q
    | |  ||||||| |||| ||||||||||||||||||    
T  28760628 gtcttgtttttcatatgaaaaactcttatttataca 28760593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 6e-89; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 20145813 - 20146098
Alignment:
Q  16 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaa 115  Q
    |||||||||||||||||||||| |||||||||||||||||| || ||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||    
T  20145813 tgtggcgtctttcgacagaaaa-aggttttaaaagcaaagtaaatgcattaactttaaattgcagaaacttcaaggaaaggtagaatacaatgcattaaa 20145911  T
Q  116 aataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgc 215  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||||| |||||||||||| || || ||||||||||    
T  20145912 aataaaggtggttcgacaaatcctttacatacattctttatgactctcttctctcgcgccagtacttcgagtgttttagaattatgcatgggtgatttgc 20146011  T
Q  216 gacccgtttt-tctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatg 301  Q
    ||||||||||  ||||| ||||||  |||||||||| ||  | |||||||||||||||| |||||||| |||| |||||||||||||    
T  20146012 gacccgttttacctatgaaaaactactatttatacataggaaataacttggaaagaaactaatcccacgatcagcactccttccatg 20146098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 2546914 - 2547198
Alignment:
Q  18 tggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaa 117  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||     ||||    
T  2546914 tggcgtctttcgacggaaaaaaggttttaaaagcaaagaaaaggcattaagtttaaattgcagaaacttaaaggaaaggtaaaatacaatg----taaaa 2547009  T
Q  118 taaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcga 217  Q
    ||||||| ||  | |||||||||||||| |||||||||| ||| ||||||||||   ||||||||||| |||||||||||| | ||||||||||||||||    
T  2547010 taaaggtggtctgccaaatcctttacatccattctttatgacttttttctctcgggtcggtacttcgagtgttttagaattctatataggtgatttgcga 2547109  T
Q  218 cccgtttt-tctatggaaaactcttatttatacaaag-atactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 305  Q
    ||||||||  |||||||||||| ||| ||||||| || | | |||| | ||||||||| |||||||| ||||||||||||||||||||||    
T  2547110 cccgttttccctatggaaaactattacttatacatagaaaaataac-tagaaagaaactaatcccacgatcaacactccttccatgtaga 2547198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 34 - 305
Target Start/End: Complemental strand, 14987278 - 14987006
Alignment:
Q  34 aaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaa-tacaatgcattaaaaataaaggtagttcgac 132  Q
    |||||||| |||||||| ||||| |||||||||||||||||||| || ||||||||| |||| ||||| ||||   |||||||||||||||| ||||||     
T  14987278 aaaaaagggtttaaaagaaaagtaaaggcattaagtttaaattggagaaacttaaagaaaagataaaaatacatctcattaaaaataaaggtggttcgaa 14987179  T
Q  133 aaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatg 231  Q
    ||||| |||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| |||||||||||| |||||||| ||||  |||||    
T  14987178 aaatcttttacatacattctttatgactcttttctctcgcaccggtacttcgagtgttttagaattatgtataggtgatatgcgacccattttccctatg 14987079  T
Q  232 gaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 305  Q
    ||||||||||||||||||||||| | |||  |||||||||||  ||| ||| |||| |||||||||||||||||    
T  14987078 gaaaactcttatttatacaaagaaaataa-gtggaaagaaacttatctcacgatcatcactccttccatgtaga 14987006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 34 - 305
Target Start/End: Complemental strand, 15416889 - 15416617
Alignment:
Q  34 aaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaa-tacaatgcattaaaaataaaggtagttcgac 132  Q
    |||||||| |||||||| ||||| |||||||||||||||||||| || ||||||||| |||| ||||| ||||   |||||||||||||||| ||||||     
T  15416889 aaaaaagggtttaaaagaaaagtaaaggcattaagtttaaattggagaaacttaaagaaaagataaaaatacatctcattaaaaataaaggtggttcgaa 15416790  T
Q  133 aaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatg 231  Q
    ||||| |||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| |||||||||||| |||||||| ||||  |||||    
T  15416789 aaatcttttacatacattctttatgactcttttctctcgcaccggtacttcgagtgttttagaattatgtataggtgatatgcgacccattttccctatg 15416690  T
Q  232 gaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 305  Q
    ||||||||||||||||||||||| | |||  |||||||||||  ||| ||| |||| |||||||||||||||||    
T  15416689 gaaaactcttatttatacaaagaaaataa-gtggaaagaaacttatctcacgatcatcactccttccatgtaga 15416617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 17600539 - 17600766
Alignment:
Q  22 gtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaa 121  Q
    ||||||||||| ||||||||||||||||| ||||| |||| |  | ||||||||| ||  |||||||||||||| ||| |||||| ||||||||||||||    
T  17600539 gtctttcgacaaaaaaaaggttttaaaagaaaagtaaaggaa--aggtttaaattccataaacttaaaggaaagataacatacaaagcattaaaaataaa 17600636  T
Q  122 ggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccg 221  Q
    ||| ||||||||||||||||||||||||||||||| ||||||| ||||||  |||||||||||| |||||||||||| ||||||||||||||||||| ||    
T  17600637 ggttgttcgacaaatcctttacatacattctttatgactctttcctctcgtgccggtacttcgagtgttttagaattctgtataggtgatttgcgacacg 17600736  T
Q  222 tttttc-tatggaaaactcttatttataca 250  Q
    |||| | |||||||||||  ||||||||||    
T  17600737 ttttccttatggaaaactactatttataca 17600766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 56 - 305
Target Start/End: Original strand, 24832402 - 24832657
Alignment:
Q  56 ttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacataca 148  Q
    |||| |||||||||||||||||||| ||||||||| ||||  |||||||||       |||||||||||||| ||| ||||||||||| |||||||||||    
T  24832402 ttaatgcattaagtttaaattgcagaaacttaaagaaaagaaaaaatacaaatgcaagtgcattaaaaataatggtggttcgacaaattctttacataca 24832501  T
Q  149 ttctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttat 247  Q
    |||||||| |||||||||||| || ||| |||||||| ||||||| |||| |||||||| |||||||||||||||||  ||||| |||||| ||||||||    
T  24832502 ttctttatgactcttttctcttgcgccgatacttcgagtgtttta-aattctgtataggcgatttgcgacccgttttccctatgaaaaactattatttat 24832600  T
Q  248 acaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 305  Q
    ||| ||  | |||  | ||||||||| |||| ||  |||| |||||||||||||||||    
T  24832601 acataggaaataa-gtagaaagaaactaatctcatgatcaccactccttccatgtaga 24832657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 3743380 - 3743620
Alignment:
Q  16 tgtggcgtctttcgacagaaaaaaggtttt--aaaagcaaagttaaggcatt-aagttt-aaattgcaggaacttaaaggaaaggtaaaatacaatgcat 111  Q
    ||||| ||||||||||| ||||| ||||||  || || ||||| |||||||| |||||| ||||||||| | ||| |||||||  |||| ||||| ||||    
T  3743380 tgtggtgtctttcgacaaaaaaagggttttttaacagtaaagtaaaggcattcaagtttgaaattgcagaatcttgaaggaaaaataaagtacaaggcat 3743479  T
Q  112 taaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatg-ttttagaattttgtataggtga 210  Q
    ||||||||||||| ||||||||||||||||  ||||||| ||||| ||||||||||   || |||||||||||| || |||||||||| |||||||||||    
T  3743480 taaaaataaaggtggttcgacaaatcctttgtatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtataggtga 3743579  T
Q  211 tttgcgacccgtttt-tctatggaaaactcttatttataca 250  Q
    ||||||||||||||| ||| |||||||||  ||||||||||    
T  3743580 tttgcgacccgttttctctttggaaaactactatttataca 3743620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 63 - 250
Target Start/End: Complemental strand, 4173615 - 4173426
Alignment:
Q  63 attaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactc 161  Q
    |||||||||||||||||| ||||||||| |||    |||| ||| ||||||||| |||||  ||||||||||||||||||||||||||||||||| ||||    
T  4173615 attaagtttaaattgcagaaacttaaagaaaaatacaaatgcaagtgcattaaagataaaactagttcgacaaatcctttacatacattctttatgactc 4173516  T
Q  162 ttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttataca 250  Q
    |||||||||||  || |||||||| |||||||||||| | |||||| |||||||||||||||||  ||||||||| ||  ||||||||||    
T  4173515 ttttctctcgcgtcgatacttcgagtgttttagaattctctataggcgatttgcgacccgttttccctatggaaatctaatatttataca 4173426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 10649318 - 10649207
Alignment:
Q  139 tttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaac 237  Q
    |||||||||||||||||| ||||||||||||||  |||||||||||| |||||| ||| ||| |||| |||||||||||| | ||||  ||||||| |||    
T  10649318 tttacatacattctttataactcttttctctcgtgccggtacttcgagtgtttt-gaaatttctataagtgatttgcgactcattttccctatggacaac 10649220  T
Q  238 tcttatttataca 250  Q
    |  ||||||||||    
T  10649219 tactatttataca 10649207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 5531784 - 5531725
Alignment:
Q  140 ttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattt 199  Q
    ||||||||||| | ||| ||||||||||||||| |||||||||||| |||| || |||||    
T  5531784 ttacatacattttgtataactcttttctctcgcaccggtacttcgagtgttgtataattt 5531725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 199
Target Start/End: Original strand, 18046386 - 18046501
Alignment:
Q  82 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcct-ttacatacattctttatcactcttttctctcgctccggtac 180  Q
    ||||||||| ||||||||| | || |||||||||| ||||||| |||||||||||| | ||||| ||||| | |||    ||||| |||||| |||||||    
T  18046386 aacttaaagaaaaggtaaattgcattgcattaaaa-taaaggtggttcgacaaatcatattacacacattatgtat--gccttttttctcgcgccggtac 18046482  T
Q  181 ttcgaatgttttagaattt 199  Q
    ||| | |||||||||||||    
T  18046483 ttcaattgttttagaattt 18046501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 14961170 - 14961215
Alignment:
Q  82 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagt 127  Q
    |||| |||| ||||||||||| || |||||||||||||||||||||    
T  14961170 aactcaaagaaaaggtaaaatgcattgcattaaaaataaaggtagt 14961215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 15390642 - 15390687
Alignment:
Q  82 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagt 127  Q
    |||| |||| ||||||||||| || |||||||||||||||||||||    
T  15390642 aactcaaagaaaaggtaaaatgcattgcattaaaaataaaggtagt 15390687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 4e-87; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 28371034 - 28371324
Alignment:
Q  16 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaa 115  Q
    ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  28371034 tgtggcgtctttcgacagaaaaatggttttaaaagcaaagtaaatgcattaagtttaaattgcagaaacttaaaggaacagtaaaatacaatgcattaaa 28371133  T
Q  116 aataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgc 215  Q
    ||||||||  ||||||||||| ||||||||||||||||||| ||| ||||| ||| | | |||||||||| |||||||||||||| ||||||||||||||    
T  28371134 aataaaggaggttcgacaaatactttacatacattctttatgacttttttcactcacactggtacttcgagtgttttagaattttatataggtgatttgc 28371233  T
Q  216 gacccgtttt-tctatggaaaactcttatttataca-aagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 305  Q
    ||||| ||||  ||||||||||||  |||||||||| |||| | |||||||||||||||| |||| ||| |||| |||||||||||||||||    
T  28371234 gacccattttccctatggaaaactactatttatacataaga-aataacttggaaagaaactaatctcacgatcagcactccttccatgtaga 28371324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 21 - 305
Target Start/End: Original strand, 9218079 - 9218367
Alignment:
Q  21 cgtctttcgacagaaaaaa----ggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaa 116  Q
    |||||||||||||||||||    | ||||||||||||||| ||  ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  9218079 cgtctttcgacagaaaaaaaaaggtttttaaaagcaaagtaaaaacattaagtttaaattgcagaaacttaaaggaaagataaaatacaatgcattaaaa 9218178  T
Q  117 ataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcg 216  Q
    |||||| | |||||||||||| |||||||||||||| ||| |  ||||||||||||  ||||||||||| |||||||||||| |||||| ||||||||||    
T  9218179 ataaagatggttcgacaaatcatttacatacattctgtatga--cttttctctcgcgtcggtacttcgagtgttttagaattctgtatatgtgatttgcg 9218276  T
Q  217 acccgtttt-tctatggaaaactcttatttataca-aagatactaacttggaaagaaac-gaatcccacaatcaacactccttccatgtaga 305  Q
    |||||||||  |||||||||||   |||||||||| || | |||||| || ||| || |  |||||||  ||||||||||||||||||||||    
T  9218277 acccgttttccctatggaaaacaactatttatacataataaactaac-tgcaaaaaagcacaatcccatgatcaacactccttccatgtaga 9218367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 66 - 249
Target Start/End: Complemental strand, 9286498 - 9286315
Alignment:
Q  66 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 165  Q
    ||||| ||| ||||| ||||||||  |||| |||| | || |||||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||    
T  9286498 aagttaaaagtgcagaaacttaaaaaaaagataaattgcattgcattaaaaataaaggtagttcgacaaatcctttacatacattttgtataactatttt 9286399  T
Q  166 ctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttatac 249  Q
    ||||||| |||||||||||| |||| ||||| ||| |||| |||||||||||||||||||  ||||||||||||  |||||||||    
T  9286398 ctctcgcaccggtacttcgagtgttgtagaa-tttctatatgtgatttgcgacccgttttccctatggaaaactactatttatac 9286315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 10660970 - 10661095
Alignment:
Q  19 ggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaat 118  Q
    ||||||||| |||||||||  ||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| |||  ||||||||| |||||    
T  10660970 ggcgtctttggacagaaaag-ggttttaaaagcaaagtaaagacattaagtttaaattgcaggaagttaaaggaaaggtgaaacgcaatgcattcaaaat 10661068  T
Q  119 aaaggtagttcgacaaatcctttacat 145  Q
    |||||| ||||||||||||||||||||    
T  10661069 aaaggtggttcgacaaatcctttacat 10661095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 107 - 250
Target Start/End: Complemental strand, 23540351 - 23540207
Alignment:
Q  107 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtatag 206  Q
    |||||||||||||||||| |||||| ||||| |||||||||||||||||| | |||||||||| |  ||||||||| || | |||||||||| |||||||    
T  23540351 tgcattaaaaataaaggtggttcgaaaaatcttttacatacattctttatgattcttttctcttgagccggtactttgagtattttagaattctgtatag 23540252  T
Q  207 gtgatttgcgacccgtttt-tctatggaaaactcttatttataca 250  Q
    ||||||||| |||||||||  ||||||||||||  ||||||||||    
T  23540251 gtgatttgcaacccgttttccctatggaaaactactatttataca 23540207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 104 - 250
Target Start/End: Original strand, 16600591 - 16600737
Alignment:
Q  104 caatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgta 203  Q
    |||||||||||||||||| || |||||||||||||||||| |||||| | ||| ||||| ||||||||| |||||||||||| |||| ||||| ||| ||    
T  16600591 caatgcattaaaaataaatgtggttcgacaaatcctttacgtacattatgtataactctattctctcgcgccggtacttcgagtgttgtagaa-tttcta 16600689  T
Q  204 taggtgatttgcgacccgttttt-ctatggaaaactcttatttataca 250  Q
    || ||||||||| |||||||||| ||||||||||||  ||||||||||    
T  16600690 taagtgatttgcaacccgtttttcctatggaaaactactatttataca 16600737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 138 - 300
Target Start/End: Original strand, 10661748 - 10661911
Alignment:
Q  138 ctttacatacattctttatcactcttttctctcgctccggtacttcgaatgtttt-agaattttgtataggtgatttgcgacccgtttttcta-tggaaa 235  Q
    ||||||||||||||||||| |||||||| | |||| ||||||| | ||  ||||| |||||| |||||||||||||||||||| ||||| | | ||||||    
T  10661748 ctttacatacattctttatgactcttttttatcgcaccggtacattgagagtttttagaattctgtataggtgatttgcgacctgttttcccaatggaaa 10661847  T
Q  236 actcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccat 300  Q
    ||||||||||||||| ||| |  |||| |||||||||| |||||||| |||||||||||||||||    
T  10661848 actcttatttatacatagaaaacaact-ggaaagaaactaatcccacgatcaacactccttccat 10661911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 77 - 219
Target Start/End: Original strand, 13110204 - 13110345
Alignment:
Q  77 gcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccg 176  Q
    |||| ||||||||| |||| |||| | || |||||||||||||||||| |||| ||||||| | |||||| ||| | ||| ||||||||||||| | |||    
T  13110204 gcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcaacaaatcatatacatatattttgtataactcttttctctctcgccg 13110303  T
Q  177 gtacttcgaatgttttagaattttgtataggtgatttgcgacc 219  Q
    ||||||||| |||| ||||| ||| |||| |||||||||||||    
T  13110304 gtacttcgagtgttgtagaa-tttctataagtgatttgcgacc 13110345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 24577408 - 24577332
Alignment:
Q  174 ccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttttctatggaaaactcttatttataca 250  Q
    |||||||||||| |||||||||||| |||||||||||||||| ||||||||| ||||| ||||||  ||||||||||    
T  24577408 ccggtacttcgattgttttagaattctgtataggtgatttgccacccgttttcctatgaaaaactactatttataca 24577332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 18672261 - 18672125
Alignment:
Q  77 gcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccg 176  Q
    |||| ||||| ||| |||| |||| |||| ||||||||||||||||||   || ||||||| |||||||||||| | ||| ||||||||||||| | ||     
T  18672261 gcagaaacttcaagaaaagataaattacattgcattaaaaataaaggt---tcaacaaatcatttacatacattttgtataactcttttctctctcgcca 18672165  T
Q  177 gtacttcgaatgttttagaattttgtataggtgatttgcga 217  Q
    ||||||||| |||| ||||| ||| |||| |||||||||||    
T  18672164 gtacttcgagtgttgtagaa-tttctataagtgatttgcga 18672125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 250
Target Start/End: Original strand, 25095053 - 25095223
Alignment:
Q  82 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatccttt-acatacattctttatcactcttttctctcgctccggtac 180  Q
    ||||||||| |||| |||| | || |||||| | ||||||||| |||||||||||  ||| ||||||||  | ||| |||||||| |||||| |||||||    
T  25095053 aacttaaagaaaagataaattgcattgcatttataataaaggtggttcgacaaataattttacatacatcatgtataactcttttatctcgcgccggtac 25095152  T
Q  181 ttcgaatgttttagaattttgtataggtgatttgcgacccgttttt--ctatggaaaactcttatttataca 250  Q
    ||||  |||||||||| ||| |||| ||||||||||  | ||||||   |||||||||||  ||||||||||    
T  25095153 ttcgggtgttttagaa-tttctataagtgatttgcggtctgttttttaatatggaaaactactatttataca 25095223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 26136242 - 26136195
Alignment:
Q  107 tgcattaaaaataaaggtagttcgacaaatcctttacatacattcttt 154  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||    
T  26136242 tgcattaaaaataaaggtggtccgacaaatcctttacatacattcttt 26136195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 22713751 - 22713661
Alignment:
Q  82 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgc 172  Q
    ||||||||| |||| |||  |||| |||||||||||||||||| ||| ||||||| ||||||||| ||||| ||| | |||||||| ||||    
T  22713751 aacttaaagaaaagataatttacattgcattaaaaataaaggtggtttgacaaattctttacatatattctatataaatcttttctatcgc 22713661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 250
Target Start/End: Complemental strand, 27123736 - 27123570
Alignment:
Q  82 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcct-ttacatacattctttatcactcttttctctcgctccggtac 180  Q
    |||||||||||| | |||| | || |||||||||| ||||||| |||||| |||||   ||||||||||| | ||| |||||||||||||||  ||||||    
T  27123736 aacttaaaggaatgataaattgcattgcattaaaa-taaaggtggttcgataaatcagattacatacattatgtataactcttttctctcgcatcggtac 27123638  T
Q  181 ttcgaatgttttagaattttgtataggtgatttgcgacccgttttt-ctatggaaaactcttatttataca 250  Q
    |  || |||| ||||| ||| ||||  ||||||||||| | ||||| ||||||||||||  ||||||||||    
T  27123637 t--gagtgttgtagaa-tttctataattgatttgcgactcatttttcctatggaaaactactatttataca 27123570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 9006931 - 9006973
Alignment:
Q  82 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggt 124  Q
    |||||||||||||||||||||  | ||||||||||||||||||    
T  9006931 aacttaaaggaaaggtaaaatgtattgcattaaaaataaaggt 9006973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 1e-80; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 42 - 305
Target Start/End: Complemental strand, 19218177 - 19217915
Alignment:
Q  42 ttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatccttt 141  Q
    ||||||||||||||| |||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  19218177 ttttaaaagcaaagtaaaggcattaagtttaaattgtagaaacttaaaggaaatgtaaaatacaatgcattaaaaataaaggtggttcgacaaatccttt 19218078  T
Q  142 acatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactct 240  Q
    |||||||||||||||  |||||||||||||| ||||||||| || |||||||||| ||||||||||||||||||||||||||||  |||||||||||  |    
T  19218077 acatacattctttatggctcttttctctcgcgccggtactttgagtgttttagaa-tttgtataggtgatttgcgacccgttttccctatggaaaacagt 19217979  T
Q  241 tatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 305  Q
    |||||||||| | | | |||| ||||||||||| |||||||| | || |||||||| ||||||||    
T  19217978 tatttatacataaaaaataac-tggaaagaaactaatcccacgaccagcactcctttcatgtaga 19217915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 56 - 305
Target Start/End: Complemental strand, 20064653 - 20064397
Alignment:
Q  56 ttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacataca 148  Q
    |||| |||||||||||||||||||| ||||||||| ||||  |||||| ||       |||||||||||||||||| |||| ||||||| ||||||||||    
T  20064653 ttaatgcattaagtttaaattgcagaaacttaaagaaaagaaaaaatataaatgcaagtgcattaaaaataaaggtggttcaacaaatcatttacataca 20064554  T
Q  149 ttctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttat 247  Q
    || ||||| |||||||||||| || |||||||||  | |||||||||||| |||||||| |||||||||||||||||  |||||||||||| ||||||||    
T  20064553 ttttttataactcttttctcttgcaccggtactttcagtgttttagaattctgtataggcgatttgcgacccgttttccctatggaaaactattatttat 20064454  T
Q  248 acaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 305  Q
    ||| ||  | |||  ||||||||||| ||||||||||||| ||| |||||||||||||    
T  20064453 acatagtaaataa-gtggaaagaaactaatcccacaatcagcacaccttccatgtaga 20064397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 56 - 303
Target Start/End: Original strand, 20060802 - 20061056
Alignment:
Q  56 ttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacataca 148  Q
    |||| |||||||||||||||||||| ||||||||| ||||  |||||||||       |||||||||||||||||| |||||||||||||||||||||||    
T  20060802 ttaatgcattaagtttaaattgcagaaacttaaagaaaagaaaaaatacaaatgcaagtgcattaaaaataaaggtggttcgacaaatcctttacataca 20060901  T
Q  149 ttctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgt-ttttctatggaaaactcttatttat 247  Q
    || ||||| |||||||||||| || |||||| ||| |||||||||||||| |||||||| ||||||| |||||| |   |||||||||||| | ||||||    
T  20060902 ttgtttatgactcttttctcttgcgccggtagttcaaatgttttagaattctgtataggcgatttgcaacccgtctaccctatggaaaactatcatttat 20061001  T
Q  248 acaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgta 303  Q
    ||| ||  | ||| || ||||||||| |||||||| |||| ||||| || ||||||    
T  20061002 acataggaagtaagtt-gaaagaaactaatcccacgatcatcactcattacatgta 20061056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 107 - 305
Target Start/End: Original strand, 20713228 - 20713426
Alignment:
Q  107 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtatag 206  Q
    |||||||||||||||||| |||| |||||||  ||||||||||||||||| |||||||||||| ||  ||||| ||||| |||||||||||| ||||||     
T  20713228 tgcattaaaaataaaggttgttcaacaaatctgttacatacattctttatgactcttttctcttgcatcggtatttcgagtgttttagaattctgtatat 20713327  T
Q  207 gtgatttgcgacccgtttt-tctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 305  Q
    | |||||||||||||||||  |||||||||||| ||||||||||| ||  | ||| || ||||||||| |||||||| |||| |||||||||||||||||    
T  20713328 gcgatttgcgacccgttttccctatggaaaactattatttatacataggaaataagtt-gaaagaaactaatcccacgatcagcactccttccatgtaga 20713426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 107 - 305
Target Start/End: Complemental strand, 23210240 - 23210042
Alignment:
Q  107 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtatag 206  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||  |||||||||||| || |||||||||||| |||||||||||| ||||||     
T  23210240 tgcattaaaaataaaagtggttcgacaaatcctttacatacattctttaagactcttttctcttgcgccggtacttcgagtgttttagaattatgtatat 23210141  T
Q  207 gtgatttgcgacccgtttt-tctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 305  Q
      ||||||||||| |||||  |||||| ||||| ||||||||||| ||  | |||  ||||||||||| |||||||| ||||||||||||||||| ||||    
T  23210140 acgatttgcgacctgttttccctatgggaaactattatttatacataggaaataa-gtggaaagaaactaatcccacgatcaacactccttccatttaga 23210042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 56 - 301
Target Start/End: Complemental strand, 20058824 - 20058571
Alignment:
Q  56 ttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacataca 148  Q
    |||| |||||||||||||||||||| ||||||||  |||   |||||||||       |||||||||||||||||| ||||||||||| |||||||||||    
T  20058824 ttaatgcattaagtttaaattgcagaaacttaaataaaataaaaaatacaaatgcaattgcattaaaaataaaggtggttcgacaaattctttacataca 20058725  T
Q  149 ttctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttttc-tatggaaaactcttatttat 247  Q
    |||||||| |||||||||||| || |  |||||| |||||||||||||||||| ||||| ||||||| ||| || |  | ||||||||||| | ||||||    
T  20058724 ttctttatgactcttttctcttgcgctagtactttgaatgttttagaattttgcataggcgatttgcaacctgtctaccttatggaaaactatcatttat 20058625  T
Q  248 acaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatg 301  Q
    ||| ||  | ||| | | ||| |||| |||||||| |||| |||||||||||||    
T  20058624 acataggaagtaagtggaaaaaaaactaatcccacgatcagcactccttccatg 20058571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 138 - 298
Target Start/End: Complemental strand, 23379474 - 23379314
Alignment:
Q  138 ctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaa 236  Q
    ||||||||||||||||||| ||||||||||||||| |  ||||||||| |||||||||||| || |||||||||||||||||||||||  ||||||||||    
T  23379474 ctttacatacattctttatgactcttttctctcgcgctagtacttcgagtgttttagaattctgcataggtgatttgcgacccgttttccctatggaaaa 23379375  T
Q  237 ctcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttcc 298  Q
    ||  |||||||||| ||| | |||   | |||||||| |||||||| |||||||||||||||    
T  23379374 ctactatttatacatagaaaataa-gagtaaagaaactaatcccacgatcaacactccttcc 23379314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 126 - 305
Target Start/End: Original strand, 25951334 - 25951513
Alignment:
Q  126 gttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt 225  Q
    |||||||||||| |||||||||||||||||| |||||||||||||  | |||||||| || |||||||||||| |||||| | ||||| ||||| |||||    
T  25951334 gttcgacaaatcttttacatacattctttatgactcttttctctctgt-cggtactttgagtgttttagaattatgtataagcgatttacgacctgtttt 25951432  T
Q  226 -tctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 305  Q
      |||||||||||| |||||||||||  |  | ||| | | |||||||| |||| ||| ||||||||||||||||||||||    
T  25951433 acctatggaaaactattatttatacatcggaaataagtggaaaagaaactaatctcacgatcaacactccttccatgtaga 25951513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 82 - 250
Target Start/End: Complemental strand, 17167417 - 17167249
Alignment:
Q  82 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtact 181  Q
    ||||||||| |||| |||| | || | |||||||||||||||| ||||||||||||||||||||||||| | ||| ||||||||||||||| | ||||||    
T  17167417 aacttaaagaaaagataaattgcattacattaaaaataaaggtggttcgacaaatcctttacatacattttgtattactcttttctctcgcgctggtact 17167318  T
Q  182 tcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttataca 250  Q
    ||   |||| ||||| ||| |||| |||||||| ||||||||||  | ||||||||||  ||||||||||    
T  17167317 tctggtgttgtagaa-tttctataagtgatttgggacccgttttccccatggaaaactactatttataca 17167249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 82 - 238
Target Start/End: Complemental strand, 19924112 - 19923956
Alignment:
Q  82 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtact 181  Q
    ||||||||| |||| |||| |||| |||||||||||||||||| |||||||||||| |||| ||||||||| ||| ||||||||||||||| || ||| |    
T  19924112 aacttaaagaaaagataaattacattgcattaaaaataaaggtggttcgacaaatcttttatatacattctgtataactcttttctctcgcgccagtaat 19924013  T
Q  182 tcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaact 238  Q
    || | |||  ||||| ||| |||| ||| |||||||||| ||||  ||||||||||||    
T  19924012 tcaagtgtggtagaa-tttctataagtggtttgcgacccattttccctatggaaaact 19923956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 66 - 199
Target Start/End: Original strand, 24878356 - 24878489
Alignment:
Q  66 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 165  Q
    |||||||||  |||| ||||||||| |||| |||| | || |||||||||||||||||| ||| ||||||||||||||||| |||   ||| ||||||||    
T  24878356 aagtttaaaacgcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggtttgacaaatcctttacataaattacgtataactctttt 24878455  T
Q  166 ctctcgctccggtacttcgaatgttttagaattt 199  Q
    |||||||  ||||| ||||| |||| ||||||||    
T  24878456 ctctcgcgtcggtaattcgagtgttgtagaattt 24878489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 82 - 238
Target Start/End: Complemental strand, 19926839 - 19926683
Alignment:
Q  82 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtact 181  Q
    ||||||||| |||| |||| | || |||||||||||||||||| |||||||||||| ||||  |||||||| ||| ||| ||||||||||| || ||| |    
T  19926839 aacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcgacaaatcttttatttacattctgtataactattttctctcgcgccagtaat 19926740  T
Q  182 tcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaact 238  Q
    || | |||  ||||| ||| |||| ||| |||||||||| ||||  ||||||||||||    
T  19926739 tcaagtgtggtagaa-tttctataagtggtttgcgacccattttccctatggaaaact 19926683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 220
Target Start/End: Original strand, 17987482 - 17987619
Alignment:
Q  82 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatc-ctttacatacattctttatcactcttttctctcg-ctccggta 179  Q
    |||| |||||||||||||||| || |||||||||||||||||| | || |||||||  | |||||||||||| ||| |||| |||| || | |  |||||    
T  17987482 aactcaaaggaaaggtaaaatgcattgcattaaaaataaaggt-ggtctacaaatcagtctacatacattctgtataactcgtttccctagacgtcggta 17987580  T
Q  180 cttcgaatgttttagaattttgtataggtgatttgcgaccc 220  Q
     || || |||||||||||| ||||||  |||||||||||||    
T  17987581 gtttgagtgttttagaattctgtata--tgatttgcgaccc 17987619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 21165282 - 21165342
Alignment:
Q  191 ttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttataca 250  Q
    |||||||| | |||||| |||||||||||||||||  |||||||||||| |||||||||||    
T  21165282 ttagaattctatataggcgatttgcgacccgttttccctatggaaaactattatttataca 21165342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 24878288 - 24878319
Alignment:
Q  18 tggcgtctttcgacagaaaaaaggttttaaaa 49  Q
    ||||||||||||||||||||||||||||||||    
T  24878288 tggcgtctttcgacagaaaaaaggttttaaaa 24878319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 3e-78; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 23 - 301
Target Start/End: Complemental strand, 24699275 - 24698999
Alignment:
Q  23 tctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaag 122  Q
    |||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  24699275 tctttcgacagaaaaagggtttcataagcaaagtaaaggcattaagtttaaattgcataaacttaaaggaaaggtaaaatacaatgcattaaaaataaag 24699176  T
Q  123 gtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgt 222  Q
    || ||||||||||||||||| ||||||||||  | | ||||||||||||| |||||||||||| |||||||||||| |||||||| ||||||||||||||    
T  24699175 gtggttcgacaaatcctttaaatacattctt--tgattcttttctctcgcgccggtacttcgagtgttttagaattctgtataggggatttgcgacccgt 24699078  T
Q  223 ttt-tctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatg 301  Q
    |||  |||||||||||| ||||||||||| ||| | ||||  | |||||||| |||| |||   ||||||||||||||||    
T  24699077 tttccctatggaaaactattatttatacatagaaaataac-ggaaaagaaactaatcacacgtccaacactccttccatg 24698999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 15686859 - 15687148
Alignment:
Q  16 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaa 115  Q
    |||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  15686859 tgtggcgtgtttcgatagaaaaagggttttaaaagcaaagtaaaggcattaagtttaaattgcagaaacttaaagcaaaggtaaaatacaatgcattaaa 15686958  T
Q  116 aataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaat-gttttagaattttgtataggtgatttg 214  Q
    ||||||||| || | | |||||| || |||||||||||||  |||||||||||||||  ||||||||||| |  ||||||||||  ||||||||||||||    
T  15686959 aataaaggtggtcctaaaaatccatttcatacattctttaagactcttttctctcgcgtcggtacttcgagtatttttagaattcagtataggtgatttg 15687058  T
Q  215 cgacccgttt-ttctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtag 304  Q
    |||| |||||   |||||||||||||||||||||||| ||| | |||| ||||||||||| |||||||| |||| ||||||||| ||||||    
T  15687059 cgactcgtttccactatggaaaactcttatttatacatagaaaataac-tggaaagaaactaatcccacgatcatcactccttctatgtag 15687148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 26010836 - 26011067
Alignment:
Q  22 gtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaa---ttgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaat 118  Q
    ||||||||||||||||  | ||||||||||||||| ||||||||||||||||    |||||| |||||||||||||| ||||||||||||| ||||||||    
T  26010836 gtctttcgacagaaaag-gtttttaaaagcaaagtaaaggcattaagtttaataacttgcagaaacttaaaggaaagataaaatacaatgctttaaaaat 26010934  T
Q  119 aaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 218  Q
    |||||| |||||||||||| |||||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||  ||||||||||||||||||    
T  26010935 aaaggtggttcgacaaatcatttacatacattctttatgactctattctctcgcgccggtacttcgagtgttttagaattcggtataggtgatttgcgac 26011034  T
Q  219 ccgtttt-tctatggaaaactcttatttataca 250  Q
    | |||||  ||||||||||||  ||||||||||    
T  26011035 ctgttttccctatggaaaactactatttataca 26011067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 35 - 250
Target Start/End: Complemental strand, 13428914 - 13428700
Alignment:
Q  35 aaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaa 134  Q
    |||| ||||||||||||||||| || |||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||| || |||| ||||    
T  13428914 aaaagggttttaaaagcaaagtaaatgcattaagtttaaattgcagaaatttaaaggaaagataaaatacaatgcattaataataaatgtggttcaacaa 13428815  T
Q  135 atcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgttt-ttctatgga 233  Q
    |||||||||||||||||||||| ||||||||||||| |  ||||||||||| ||||||||||  || |||||||||||||||||  ||||   |||||||    
T  13428814 atcctttacatacattctttattactcttttctctcacgtcggtacttcgagtgttttagaa--ttatataggtgatttgcgacatgtttcccctatgga 13428717  T
Q  234 aaactcttatttataca 250  Q
    |||||  ||||||||||    
T  13428716 aaactactatttataca 13428700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 43 - 250
Target Start/End: Original strand, 4769742 - 4769949
Alignment:
Q  43 tttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatccttta 142  Q
    |||||||||||||| ||||||||||||||||||| ||  ||||||||||||||   ||||||||||||||| |||||||||| |||||| |||| | |||    
T  4769742 tttaaaagcaaagtaaaggcattaagtttaaatttcataaacttaaaggaaagaataaatacaatgcattagaaataaaggtggttcgaaaaattcgtta 4769841  T
Q  143 catacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttttctatggaaaactctta 242  Q
    |||||||||||||| |||||||||||| || | |||| ||||| |||||||||||| ||||||| ||||||| ||| | |||  ||||||||||||  ||    
T  4769842 catacattctttatgactcttttctcttgcgctggtatttcgagtgttttagaattatgtatagatgatttgggacgcttttccctatggaaaactacta 4769941  T
Q  243 tttataca 250  Q
    ||||||||    
T  4769942 tttataca 4769949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 4765916 - 4765677
Alignment:
Q  18 tggcgtctttcgacagaaaaaaggtttt-aaaagcaaagttaaggcattaagtttaaa-ttgcaggaacttaaaggaaaggtaaaatacaatgcattaaa 115  Q
    |||||||||||||||  |||| |||||| ||||||||||| ||||||||||||||||| |||||  |||||||||||||  |||| ||||||||||||||    
T  4765916 tggcgtctttcgacatgaaaagggtttttaaaagcaaagtaaaggcattaagtttaaaattgcataaacttaaaggaaaaataaagtacaatgcattaaa 4765817  T
Q  116 aataaaggtagttcgacaaatcctttacatac----attctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgat 211  Q
    | ||||||| |||||||||||| |||||||||    ||||||||| ||||||||||||||| |  |||| || | |||||||||||  | ||||||||||    
T  4765816 agtaaaggtggttcgacaaatcatttacatacattaattctttatgactcttttctctcgcgctagtacatcaagtgttttagaatactatataggtgat 4765717  T
Q  212 ttgcgacccgttttt-ctatggaaaactcttatttataca 250  Q
    ||||||||| ||||| ||||||||||||  ||||||||||    
T  4765716 ttgcgacccatttttcctatggaaaactactatttataca 4765677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 107 - 305
Target Start/End: Original strand, 7148790 - 7148988
Alignment:
Q  107 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtatag 206  Q
    |||||||||| |||| || ||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||| | | |||||||||| |||||||    
T  7148790 tgcattaaaagtaaaagtggttcgacaaatcctttacatacattctttatgactcttttctctcgcgtcggtacttcaactattttagaattctgtatag 7148889  T
Q  207 gtgatttgcgaccc-gtttttctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 305  Q
    |  ||||| ||||| ||||| ||||||||||||  |||||||||| ||  | ||| |||||||||||| |||||||| ||||||||||||||||||||||    
T  7148890 gcaatttgtgacccggttttcctatggaaaactactatttatacataggaaataa-ttggaaagaaactaatcccacgatcaacactccttccatgtaga 7148988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 4832740 - 4832504
Alignment:
Q  16 tgtggcgtctttcgacagaaaaaagg-ttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaa 114  Q
    |||| |||||||||| |||||||||| |||| ||||||| || ||| ||||||||||||||||||  |||| ||||||||  ||||||||||||||||||    
T  4832740 tgtgacgtctttcgaaagaaaaaagggtttttaaagcaaggtaaagacattaagtttaaattgcataaactcaaaggaaaattaaaatacaatgcattaa 4832641  T
Q  115 aaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttg 214  Q
    | |||||||| || |  || |||||||| ||| ||||||| | ||||||||||||| | ||  | |||||| |||||||||||| |||||||||||||||    
T  4832640 atataaaggtggtccagcagatcctttaaatatattctttgtgactcttttctctcacaccaatgcttcgagtgttttagaattctgtataggtgatttg 4832541  T
Q  215 cgacccgtttt-tctatggaaaactcttatttataca 250  Q
    ||| || ||||  ||||||||||||  ||||||||||    
T  4832540 cgatccattttccctatggaaaactactatttataca 4832504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 99 - 305
Target Start/End: Complemental strand, 9033622 - 9033415
Alignment:
Q  99 aaatacaa-tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgtttt-agaa 196  Q
    |||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| | ||  |||||||| || ||| |||||||| |||||| | ||    
T  9033622 aaatacaagtgcattaaaaataaaggtggtttgacaaatcctttacatacattctttgtgaccattttctcttgcgccgatacttcgagtgttttgaaaa 9033523  T
Q  197 ttttgtataggtgatttgcgacccgtttttctatggaaaactcttatttataca-aagatactaacttggaaagaaacgaatcccacaatcaacactcct 295  Q
    || |||||||| ||| ||||||||||||| |||||||||||| ||||||||||| |||| | |||  ||||||||||| |||| ||| |||||||||||     
T  9033522 ttctgtataggcgatatgcgacccgttttcctatggaaaactattatttatacataaga-aataa-gtggaaagaaactaatcacacgatcaacactccc 9033425  T
Q  296 tccatgtaga 305  Q
    ||||||||||    
T  9033424 tccatgtaga 9033415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 110 - 305
Target Start/End: Complemental strand, 29614724 - 29614529
Alignment:
Q  110 attaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgtt-ttagaattttgtataggt 208  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| |   ||||||||||| |||| |||||||| | ||||||     
T  29614724 attaaaaataaaggtggttcgacaaatcctttacatacattatttatgactcttttctcttgtgtcggtacttcgagtgttcttagaattatatataggc 29614625  T
Q  209 gatttgcgacccgtttt-tctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 305  Q
    |||||||||||| ||||  |||||||||||| || |||||||| ||  | |||  || |||||||| ||||||||||||| |||||||||||||||||    
T  29614624 gatttgcgacccattttccctatggaaaactatt-tttatacataggaaataa-atgaaaagaaactaatcccacaatcagcactccttccatgtaga 29614529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 72 - 250
Target Start/End: Original strand, 23378488 - 23378668
Alignment:
Q  72 aaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcga-caaatcctttacatacattctttatcactcttttctctc 170  Q
    |||||| || |||||||||||||| |||| | || |||||||||||||||||| |||| | ||||||||||||||||||| | ||| |||||||||||||    
T  23378488 aaattgtagaaacttaaaggaaagataaattgcattgcattaaaaataaaggtggttcaaacaaatcctttacatacattatgtatgactcttttctctc 23378587  T
Q  171 gctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttataca 250  Q
    || ||| |||||||| | ||||||||||||||||| |||||||| ||| | ||||  ||||| ||||||  ||||||||||    
T  23378588 gcgccgatacttcgagtattttagaattttgtataagtgatttgtgacacattttccctatgtaaaactactatttataca 23378668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 107 - 247
Target Start/End: Complemental strand, 16243069 - 16242928
Alignment:
Q  107 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtatag 206  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||||||| |||||||||||||||   |||||||||| |||||||||||  |||| ||    
T  16243069 tgcattaaaaataaaagtggttcgacaaatgctttacatacattctttatgactcttttctctcgcgttggtacttcgagtgttttagaatcctgtagag 16242970  T
Q  207 gtgatttgcgacccgtttt-tctatggaaaactcttatttat 247  Q
    |  |||| |||| ||||||  ||||||||||||  |||||||    
T  16242969 gaaatttacgactcgttttccctatggaaaactactatttat 16242928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 27304547 - 27304424
Alignment:
Q  76 tgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctcc 175  Q
    ||||| ||||||||| |||  |||| | || ||||||||||||||| || ||| ||||||| || |||||||||| | ||| | ||||||||||||  ||    
T  27304547 tgcagaaacttaaagaaaatataaattgcattgcattaaaaataaaagtggtttgacaaattctatacatacattttgtataattcttttctctcgagcc 27304448  T
Q  176 ggtacttcgaatgttttagaattt 199  Q
    | ||||| || |||| ||||||||    
T  27304447 gatactttgagtgttgtagaattt 27304424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 13409834 - 13409876
Alignment:
Q  82 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggt 124  Q
    ||||||||||||||||||||| || ||||||||||||||||||    
T  13409834 aacttaaaggaaaggtaaaatgcattgcattaaaaataaaggt 13409876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 8737308 - 8737234
Alignment:
Q  76 tgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacatt 150  Q
    ||||| || |||||| |||| |||| | || |||||| ||||||||||| |||| ||||||||||||||| ||||    
T  8737308 tgcagaaagttaaagaaaagctaaattgcattgcatttaaaataaaggtggttcaacaaatcctttacatgcatt 8737234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 9089546 - 9089472
Alignment:
Q  76 tgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacatt 150  Q
    ||||| || |||||| |||| |||| | || |||||| ||||||||||| |||| ||||||||||||||| ||||    
T  9089546 tgcagaaagttaaagaaaagctaaattgcattgcatttaaaataaaggtggttcaacaaatcctttacatgcatt 9089472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 1e-77; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 22397777 - 22397545
Alignment:
Q  16 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaa-ggaaaggtaaaatacaatgcattaa 114  Q
    ||||||||||||||||| ||||||||||||||||| |||||    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  22397777 tgtggcgtctttcgacaaaaaaaaggttttaaaagaaaagtct--gcattaagtttaaattgcagaaacttaaaaggaaaggtaaaatacaatgcattaa 22397680  T
Q  115 aaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatg-ttttagaattttgtataggtgattt 213  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| || |||||||||| ||||||||||||||    
T  22397679 aaataaaggttgttcgacaaatcctttacatacattctttatgactattttctctcgcgccggtacttcgagtgtttttagaattctgtataggtgattt 22397580  T
Q  214 gcgacccgtttt-tctatggaaaactcttatttat 247  Q
    ||||||||||||  ||| |||||||||||||||||    
T  22397579 gcgacccgttttccctacggaaaactcttatttat 22397545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 107 - 305
Target Start/End: Original strand, 16177304 - 16177502
Alignment:
Q  107 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtatag 206  Q
    ||||||||||||||| || |||||| |||||||||||||||||||||||| ||||||||||||      |||||||||| ||||||||||||||||||||    
T  16177304 tgcattaaaaataaatgtggttcgaaaaatcctttacatacattctttatgactcttttctcttatgttggtacttcgagtgttttagaattttgtatag 16177403  T
Q  207 gtgatttgcgacccgtttttc-tatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 305  Q
    || |||||||||||||||| | |||||||||||  |||||||||| ||| | |||  ||||||||||| ||||||||||||| |||||||||||||||||    
T  16177404 gttatttgcgacccgttttccatatggaaaactaatatttatacatagaaaataa-gtggaaagaaactaatcccacaatcagcactccttccatgtaga 16177502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 25 - 225
Target Start/End: Original strand, 17524797 - 17524998
Alignment:
Q  25 tttcgacagaaaaaaggtttt-aaaagcaaagttaaggcattaagtttaaa-ttgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaag 122  Q
    |||||| | |||||||||||| |||| |||||| |||| ||||| |||||| ||| || ||||||||| |||  |||| || ||||||||||||||||||    
T  17524797 tttcgataaaaaaaaggtttttaaaaacaaagtaaaggaattaattttaaaattgtagaaacttaaagaaaaaataaattataatgcattaaaaataaag 17524896  T
Q  123 gtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgt 222  Q
    || || |||||| ||||||| ||||||||||||| ||||||||||||| | || | ||||||| |||||||||||| |||||||||||||||||||| ||    
T  17524897 gttgtccgacaa-tcctttaaatacattctttatgactcttttctctcacgccagcacttcgagtgttttagaattatgtataggtgatttgcgacctgt 17524995  T
Q  223 ttt 225  Q
    |||    
T  17524996 ttt 17524998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 795 - 922
Target Start/End: Complemental strand, 17365527 - 17365400
Alignment:
Q  795 gaatggatttataaacaaaatggaaccaagaagggtaattgggttcaaaagacaaggtgaagtctgcactaggtaatgctgggaatcttacccaataaaa 894  Q
    |||||| ||||||  ||||||||||||||| |||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||  | |||||    
T  17365527 gaatggctttatagccaaaatggaaccaaggagggtagttgggttcgaaagacaaagtgaagtctgcactaggtaatgctgggaatcttacgtagtaaaa 17365428  T
Q  895 tggtaaagccattttgtatttggctagt 922  Q
    || |||||||||||||||| ||||||||    
T  17365427 tgctaaagccattttgtatctggctagt 17365400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 107 - 303
Target Start/End: Complemental strand, 1177349 - 1177150
Alignment:
Q  107 tgcattaaaaataaaggtagttcgacaaatcctttacatacat----tctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgt 202  Q
    |||||||||||||||||| ||||||||||||||||||||||||    ||||||| ||||||||||||||| |  ||||||||| |||||||||||| |||    
T  1177349 tgcattaaaaataaaggtggttcgacaaatcctttacatacatgtattctttatgactcttttctctcgcgctagtacttcgagtgttttagaattctgt 1177250  T
Q  203 ataggtgatttgcgacccgtttttctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgt 302  Q
    |||| ||||||||| || ||||| ||||| ||||||  |||||||||| ||  | |||  || |||||||| |||| ||  ||||||||||| |||||||    
T  1177249 atagatgatttgcgtcctgttttcctatgcaaaactactatttatacataggaaataa-atgaaaagaaactaatctcatgatcaacactccctccatgt 1177151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 111 - 305
Target Start/End: Original strand, 15830026 - 15830220
Alignment:
Q  111 ttaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtga 210  Q
    ||||||||||| ||  ||||||||||| |||||||||||| ||||| ||||||||||||| | | | ||||| || |||||||||||| |||||||| ||    
T  15830026 ttaaaaataaaagtgattcgacaaatcttttacatacattatttatgactcttttctctcacactgatactttgagtgttttagaattctgtataggcga 15830125  T
Q  211 tttgcgacccgtttttc-tatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 305  Q
    ||||||||||||||| | |||| |||||| ||||||||||| ||| | |||  ||||||||||| ||||||| ||| | ||||| |||||||||||    
T  15830126 tttgcgacccgttttccttatgcaaaactattatttatacatagaaaataa-gtggaaagaaactaatcccataattagcactctttccatgtaga 15830220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 82 - 247
Target Start/End: Complemental strand, 17948007 - 17947842
Alignment:
Q  82 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtact 181  Q
    |||||||||||||| |||| | || || ||||||||||||||| ||||||||||||||||||||||||| | ||| ||||||| |||| || ||| ||||    
T  17948007 aacttaaaggaaagataaattgcattgaattaaaaataaaggtggttcgacaaatcctttacatacattttatataactctttcctcttgcgccgttact 17947908  T
Q  182 tcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttat 247  Q
    ||||||||| ||||| ||| |||| |||||||  ||||| ||||  ||||||||||||  |||||||    
T  17947907 tcgaatgttgtagaa-tttctataagtgatttttgacccattttccctatggaaaactaatatttat 17947842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 66 - 219
Target Start/End: Complemental strand, 14763090 - 14762938
Alignment:
Q  66 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 165  Q
    ||||| ||| ||||| ||||||||| |||| |||| | || |||||||||||||||||| |||||| || ||||||||||||||||| ||| ||||||||    
T  14763090 aagttaaaagtgcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcgagaactcctttacatacattctgtataactctttt 14762991  T
Q  166 ctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacc 219  Q
    ||||||   | ||||||||| || | ||||| ||| |||| |||||||||||||    
T  14762990 ctctcgtgtcagtacttcgagtgatgtagaa-tttctataagtgatttgcgacc 14762938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 66 - 199
Target Start/End: Original strand, 18713709 - 18713842
Alignment:
Q  66 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 165  Q
    ||||| ||| ||||| ||||||||| || | |||| | || ||| |||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||    
T  18713709 aagttaaaagtgcagaaacttaaagaaatgataaattgcattgctttaaaaataaaggtggttcgacaaatcctttacatacattctgtataactctttt 18713808  T
Q  166 ctctcgctccggtacttcgaatgttttagaattt 199  Q
    ||||||   |||||||| || |||| ||||||||    
T  18713809 ctctcgtgacggtactttgagtgttatagaattt 18713842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 305
Target Start/End: Complemental strand, 31126351 - 31126082
Alignment:
Q  56 ttaaggcattaagttt-aaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacatac 147  Q
    |||| ||||||||||| ||||||||| |||| |||| ||||  |||||||||       ||||||| |||||||||| ||||| ||||||||||||||||    
T  31126351 ttaatgcattaagttttaaattgcagaaactcaaagaaaagaaaaaatacaaatgcaagtgcattataaataaaggtggttcggcaaatcctttacatac 31126252  T
Q  148 attct------------ttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaa 234  Q
    ||| |            |||| |||||||||||| ||   | |||||||| ||||||||||||   |||||| |||||| ||||||||||  ||| ||||    
T  31126251 attttaaaatatgagatttatgactcttttctcttgcgttgttacttcgagtgttttagaattccatataggagatttgagacccgttttccctaaggaa 31126152  T
Q  235 aactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 305  Q
    |||| ||||||||||| ||  | |||  ||||||||||| |||||||  || | |||||||||||||||||    
T  31126151 aactattatttatacataggaaataa-gtggaaagaaactaatcccaagattagcactccttccatgtaga 31126082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 734 - 775
Target Start/End: Complemental strand, 17365599 - 17365558
Alignment:
Q  734 aagtttttgggtaattgtgtaaaccaaatttggtccaagtta 775  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  17365599 aagtttttgggtaattgtgtaaaccaaacttggtccaagtta 17365558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 25945847 - 25945889
Alignment:
Q  82 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggt 124  Q
    ||||||||||| ||||||||| || ||||||||||||||||||    
T  25945847 aacttaaaggagaggtaaaatgcattgcattaaaaataaaggt 25945889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 169
Target Start/End: Original strand, 28712360 - 28712461
Alignment:
Q  68 gtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcct-ttacatacattctttatcactcttttc 166  Q
    |||||||  |||| ||||||||| ||||||||| |||| ||||||||   ||||||| ||||||||||||   ||||||||||| | ||| |||||||||    
T  28712360 gtttaaaacgcagaaacttaaagaaaaggtaaattacattgcattaatg-taaaggtggttcgacaaatcagattacatacattatatatgactcttttc 28712458  T
Q  167 tct 169  Q
    |||    
T  28712459 tct 28712461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 628
Target Start/End: Complemental strand, 17365764 - 17365687
Alignment:
Q  551 gtgtactagtctgagtcgtttgtcaaggcacagctgcaagatcaataaaagaggtatctcaaaataaggaaacatata 628  Q
    |||||||||||||||| ||||||| ||||| | |||| |  ||||| ||||| || | |||||||||||||| |||||    
T  17365764 gtgtactagtctgagttgtttgtcgaggcataactgcgaagtcaatgaaagaagtgtgtcaaaataaggaaatatata 17365687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 5e-71; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 11361595 - 11361866
Alignment:
Q  16 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaa 115  Q
    ||||| |||||| ||||| ||||| |||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||    
T  11361595 tgtggtgtcttttgacaggaaaaaagttttaaaagcaaagtaaaggcattaagtttaaattgcagaaatttaaatgaaaggtaaaatacaatgcattaaa 11361694  T
Q  116 aataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgc 215  Q
    ||||||||| ||||||||||||||||||||||||||||| | ||||||||| |||||  |||||  |||| |||||||||||| |||||||||||| | |    
T  11361695 aataaaggtggttcgacaaatcctttacatacattctttgtaactcttttccctcgcgtcggtaagtcgagtgttttagaattctgtataggtgatctac 11361794  T
Q  216 gacccgtttt-tctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatca 287  Q
    |||| |||||  ||| |||||||||||||||||||| ||| | |  | ||||||||||| |||||||| ||||    
T  11361795 gacctgttttccctacggaaaactcttatttatacatagaaaat-gcatggaaagaaactaatcccacgatca 11361866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 23 - 305
Target Start/End: Complemental strand, 9409370 - 9409083
Alignment:
Q  23 tctttcgacagaaaaaaggttttaaaa-gcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaa 121  Q
    |||| ||||||||||  |||||||||| ||||||| || | |||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||    
T  9409370 tcttacgacagaaaaggggttttaaaaagcaaagtaaaagtattaagtttaaattgcataaacttaaaggaaagataaaatacaatgcattaaaaataaa 9409271  T
Q  122 ggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccg 221  Q
    ||| ||||||||||||||||||||||||||||||| ||| |||||||| || |||||||||||| |||||||||||| | |||| |||||||||||||||    
T  9409270 ggtggttcgacaaatcctttacatacattctttataacttttttctcttgcgccggtacttcgagtgttttagaattctatataagtgatttgcgacccg 9409171  T
Q  222 ttt-ttctatggaaaactcttatttataca-aagatactaacttggaaagaaac---gaatcccacaatcaacactccttccatgtaga 305  Q
    |||   ||||||||||||  |||||||||| | || | |||| |||||| ||||    |||||||| ||||||||| ||||||||||||    
T  9409170 tttcccctatggaaaactactatttatacataggaaaataac-tggaaaaaaacaaataatcccacgatcaacacttcttccatgtaga 9409083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 66 - 248
Target Start/End: Original strand, 16675086 - 16675269
Alignment:
Q  66 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatccttt-acatacattctttatcactcttt 164  Q
    ||||||||| ||||| ||| ||||| ||||||||| |  | |||||| |||||||| || |||||||||||| ||| ||||||||||| ||| ||||| |    
T  16675086 aagtttaaaatgcagaaacataaagaaaaggtaaattgtattgcatttaaaataaaagtggttcgacaaatcattttacatacattctgtataactctct 16675185  T
Q  165 tctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttttc-tatggaaaactcttatttata 248  Q
    |||||||| |||||||||||| |||||||||| | | |||| | |||||| |||||||||||| |||||||||||  ||||||||    
T  16675186 tctctcgcaccggtacttcgagtgttttagaa-tatctataagggatttgtgacccgtttttcatatggaaaactactatttata 16675269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 5358040 - 5358102
Alignment:
Q  107 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctct 169  Q
    ||||||||||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||    
T  5358040 tgcattaaaaataaaggtagttcgacaaatcatttacatacattatgtatgactcttttctct 5358102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 8140832 - 8140930
Alignment:
Q  149 ttctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttttc-tatggaaaactcttatttat 247  Q
    |||| ||| ||||||| ||||||| |||||||||| | |||||||||||||| |||| |||||||| ||||  |||| | |||||||||||  |||||||    
T  8140832 ttctatataactctttactctcgcgccggtacttcaagtgttttagaatttt-tataagtgatttgtgaccaattttccatatggaaaactactatttat 8140930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 250
Target Start/End: Original strand, 4697470 - 4697638
Alignment:
Q  82 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcct-ttacatacattctttatcactcttttctctcgctccggtac 180  Q
    ||||||||| ||||||||| |  | |||||||||  ||||||| ||||||| ||||   ||||||||||| | ||| ||| | ||||||| | ||||| |    
T  4697470 aacttaaagaaaaggtaaattgtattgcattaaag-taaaggtggttcgacgaatcagattacatacattttgtataactttgttctctcacgccggtgc 4697568  T
Q  181 ttcgaatgttttagaattttgtataggtgatttgcgacccgtttttc-tatggaaaactcttatttataca 250  Q
    || || |||||||||| ||| |||| |||||||||||| | |||| | |||||||||||  ||||||||||    
T  4697569 tttgagtgttttagaa-tttctataagtgatttgcgactcattttccatatggaaaactactatttataca 4697638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 18558515 - 18558473
Alignment:
Q  82 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggt 124  Q
    ||||||||||||| ||||||| || ||||||||||||||||||    
T  18558515 aacttaaaggaaatgtaaaatgcattgcattaaaaataaaggt 18558473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 1e-62; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 61 - 305
Target Start/End: Original strand, 20146169 - 20146420
Alignment:
Q  61 gcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacatacattctt 153  Q
    |||||||||||||||||||| ||||||||| ||||| |||||| ||       |||||||||||||||| | || | | ||||||||||||||||| |||    
T  20146169 gcattaagtttaaattgcagaaacttaaagaaaaggaaaaataaaaatgcaagtgcattaaaaataaagatggtccaaaaaatcctttacatacat-ctt 20146267  T
Q  154 tatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttttc-tatggaaaactcttatttatacaaa 252  Q
    ||| ||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||    
T  20146268 tatgactcttttctctcgcaccggtactttgagtgttttagaattttgtataggtgatttgcgacccattttccatatggaaaactcttatttatacaaa 20146367  T
Q  253 gatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 305  Q
    |  | |||||||||||||||| | |||||| |||||||||||||| |||||||    
T  20146368 gcaaataacttggaaagaaactagtcccacgatcaacactccttctatgtaga 20146420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 42 - 250
Target Start/End: Complemental strand, 11014027 - 11013817
Alignment:
Q  42 ttttaaaagcaaagttaaggcattaagtttaaa-ttgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctt 140  Q
    ||||||||||||||| ||||||||||||||||| || | | |||||||||||||  |||| ||||||||||||||||||||||| | |||||||||||||    
T  11014027 ttttaaaagcaaagtaaaggcattaagtttaaaattcctgaaacttaaaggaaaaataaagtacaatgcattaaaaataaaggtggctcgacaaatcctt 11013928  T
Q  141 tacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactc 239  Q
    |||||| ||||||||| |||||||||||||   | |||| ||||| ||||||| ||||||||||||||||||||| |||| ||||  |||||||||||||    
T  11013927 tacatatattctttatgactcttttctctcaagctggtatttcgagtgttttaaaattttgtataggtgatttgcaacccattttacctatggaaaactc 11013828  T
Q  240 ttatttataca 250  Q
     ||| ||||||    
T  11013827 ctatatataca 11013817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 72 - 250
Target Start/End: Original strand, 33103021 - 33103201
Alignment:
Q  72 aaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcg 171  Q
    ||||||||| |||||||||||||| |||| | || ||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||     
T  33103021 aaattgcagaaacttaaaggaaagataaattgcattgcattaaaaataaatgtagttcgacaaatcctttacatacattctatatgactcttttctctca 33103120  T
Q  172 ctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt--tctatggaaaactcttatttataca 250  Q
    |  ||||||||||| |||||||||||| |||||||||||||||||||| |||||   ||||||||||||  ||||||||||    
T  33103121 cgtcggtacttcgagtgttttagaattatgtataggtgatttgcgacctgttttcccctatggaaaactactatttataca 33103201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 66 - 238
Target Start/End: Complemental strand, 36571826 - 36571655
Alignment:
Q  66 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 165  Q
    ||||| ||| ||||| ||||||||| |||| | || | || |||||||||||||||||| ||||||||||||||||||||||||| | ||| ||||||||    
T  36571826 aagttaaaactgcagaaacttaaag-aaagattaattgcattgcattaaaaataaaggtggttcgacaaatcctttacatacattatgtataactctttt 36571728  T
Q  166 ctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgttttt-ctatggaaaact 238  Q
    ||||||  |  ||||||||| |||| ||||| ||| |||| |||||||||||||| ||||| ||||||||||||    
T  36571727 ctctcgtgctagtacttcgagtgttgtagaa-tttctataagtgatttgcgacccatttttcctatggaaaact 36571655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 22608003 - 22607834
Alignment:
Q  66 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 165  Q
    ||||| ||||||||| || ||||||||||| |||| |||| |||||||||||||||||| ||||  || |||||||||||||||| ||||| ||||||||    
T  22608003 aagttaaaattgcag-aatttaaaggaaagataaactacattgcattaaaaataaaggtggttcagcagatcctttacatacattttttataactctttt 22607905  T
Q  166 ctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgttt-ttctatggaaaa 236  Q
    |||| ||  ||||||||||| |||| |||||  ||  ||| ||||||||||||||||||  |||||||||||    
T  22607904 ctcttgcgacggtacttcgattgttatagaa-attccataagtgatttgcgacccgtttcctctatggaaaa 22607834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 85 - 250
Target Start/End: Complemental strand, 20150588 - 20150422
Alignment:
Q  85 ttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcg 184  Q
    |||||| |||| |||| || | || ||||||||||||||| ||| |||||||||||| ||| |||| | ||| ||| |||||||||||  ||||||||||    
T  20150588 ttaaagaaaagataaattatattgtattaaaaataaaggtggtttgacaaatcctttgcatgcattttgtatgacttttttctctcgcgtcggtacttcg 20150489  T
Q  185 aatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttataca 250  Q
    | |||| ||||||| ||||||||||||||| ||||||||||  |||||||||||   ||||||||||    
T  20150488 agtgttgtagaattatgtataggtgatttgagacccgttttccctatggaaaacaactatttataca 20150422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 110 - 250
Target Start/End: Complemental strand, 13202192 - 13202052
Alignment:
Q  110 attaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtg 209  Q
    ||||||||||||||| ||||||||||||||||||||||||| | ||| ||| ||||||||||| |||||| ||||| |||| ||||| ||| |||| |||    
T  13202192 attaaaaataaaggtggttcgacaaatcctttacatacattatgtataactattttctctcgcgccggtatttcgagtgttgtagaa-tttctataagtg 13202094  T
Q  210 atttgcgacccgttttt-ctatggaaaactcttatttataca 250  Q
    |||||||||  |||||| ||||| ||||||  ||||||||||    
T  13202093 atttgcgacatgtttttcctatgaaaaactactatttataca 13202052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 82 - 247
Target Start/End: Original strand, 17615274 - 17615439
Alignment:
Q  82 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtact 181  Q
    ||||||||| |||||| || | || |||||| ||||||||||| ||||||||||||||||||||||||| | | | |||||||| |||| | || |||||    
T  17615274 aacttaaagaaaaggttaactgcattgcattcaaaataaaggttgttcgacaaatcctttacatacattatgtgtaactcttttttctcccgcctgtact 17615373  T
Q  182 tcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttat 247  Q
    |||| |||| ||||| ||| |||| |||||| | ||||||||||  ||||||||||||  |||||||    
T  17615374 tcgagtgttgtagaa-tttctataagtgattcgtgacccgttttccctatggaaaactactatttat 17615439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 723 - 778
Target Start/End: Complemental strand, 20839813 - 20839758
Alignment:
Q  723 tccataatgtaaagtttttgggtaattgtgtaaaccaaatttggtccaagttactc 778  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20839813 tccataatgtaaagtttttgggtaattatgtaaaccaaatttggtccaagttactc 20839758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 199
Target Start/End: Complemental strand, 22620153 - 22620063
Alignment:
Q  109 cattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattt 199  Q
    |||||||||||||||| |||||||||||| |||||||||  | |  || ||| ||||||||||||| |||||||||| |||| ||||||||    
T  22620153 cattaaaaataaaggtggttcgacaaatcttttacatacggtttgaataactattttctctcgctctggtacttcgagtgttgtagaattt 22620063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 13232801 - 13232737
Alignment:
Q  187 tgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttataca 250  Q
    |||||||||||| || ||||||||||||||| |||||||  |||||||||||| |||||||||||    
T  13232801 tgttttagaattatgcataggtgatttgcgatccgttttccctatggaaaactattatttataca 13232737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 20866221 - 20866293
Alignment:
Q  66 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcc 138  Q
    ||||| ||||||||| ||||||||| |||| |||| |    |||||||||||||||||| |||||||||||||    
T  20866221 aagttaaaattgcagaaacttaaagaaaagataaattgtgttgcattaaaaataaaggtggttcgacaaatcc 20866293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 106; Significance: 2e-52; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 61 - 305
Target Start/End: Complemental strand, 5851 - 5599
Alignment:
Q  61 gcattaagtttaaattgcaggaacttaaaggaaaggtaaaata------caa-tgcattaaaaataaaggtagttcgacaaatcctttacatacattctt 153  Q
    |||||||||||||||||||  ||||||||| ||||| ||||||      ||| |||||||||||||||||| || |||||||| |||||||||||||| |    
T  5851 gcattaagtttaaattgcaaaaacttaaagaaaaggaaaaataacaatgcaagtgcattaaaaataaaggtggtccgacaaattctttacatacattcct 5752  T
Q  154 tatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttatttatacaaa 252  Q
    ||| |||||||| |||||   ||||||||| |  ||||||||||| |||||||||||||| |||||||||||  |||| |||||||||||||||||||||    
T  5751 tatgactcttttttctcgtgtcggtacttcaagcgttttagaattctgtataggtgatttacgacccgttttccctatagaaaactcttatttatacaaa 5652  T
Q  253 gatactaacttggaaagaaacgaatcccacaatcaacactccttccatgtaga 305  Q
    |  | |||||||||| ||||| |||||||| ||||||||||||||||| ||||    
T  5651 gcaaataacttggaatgaaactaatcccacgatcaacactccttccatataga 5599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 100; Significance: 6e-49; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 20793 - 21077
Alignment:
Q  16 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaa 115  Q
    |||||||||||| |||||||||| ||||||||||| |   | || |||||||||||||| ||||| ||||||||||||||  ||||| ||||||||| ||    
T  20793 tgtggcgtcttttgacagaaaaa-ggttttaaaagtagtataaatgcattaagtttaaaatgcagaaacttaaaggaaagaaaaaatgcaatgcatttaa 20891  T
Q  116 aataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgc 215  Q
    ||||||||| |||| |||||| ||||||||||||||||||| ||||||||||||||     ||||||| | |||||||||||| | |||| |||||||||    
T  20892 aataaaggtggttccacaaattctttacatacattctttatgactcttttctctcgtgttagtacttcaagtgttttagaattat-tatacgtgatttgc 20990  T
Q  216 gacccgtt-tttctatggaaaactcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttccatgt 302  Q
    ||||| || |  |||||||| |||  |||||||||| ||  | |||  ||||||||||| |||||||| |||||||||||||||||||    
T  20991 gacccattgtccctatggaagactactatttatacataggaaataa-gtggaaagaaactaatcccacgatcaacactccttccatgt 21077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 138 - 298
Target Start/End: Original strand, 12991 - 13151
Alignment:
Q  138 ctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaa 236  Q
    ||||||||||||||||||| ||||||||||||||| |  ||||||||| |||||||||||| || |||||||||||||||||||||||  ||||||||||    
T  12991 ctttacatacattctttatgactcttttctctcgcgctagtacttcgagtgttttagaattctgcataggtgatttgcgacccgttttccctatggaaaa 13090  T
Q  237 ctcttatttatacaaagatactaacttggaaagaaacgaatcccacaatcaacactccttcc 298  Q
    ||  |||||||||| ||| | |||   | |||||||| |||||||| |||||||||||||||    
T  13091 ctactatttatacatagaaaataa-gagtaaagaaactaatcccacgatcaacactccttcc 13151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 17221 - 17392
Alignment:
Q  66 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 165  Q
    ||||| ||| ||||| ||||||||| || | |||| | || ||| |||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||    
T  17221 aagttaaaagtgcagaaacttaaagaaatgataaattgcattgctttaaaaataaaggtggttcgacaaatcctttacatacattctgtataactctttt 17320  T
Q  166 ctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaact 238  Q
    ||||||| ||||||| |||| |||| || || ||| |||| |||||||| ||||||||||  ||||||||||||    
T  17321 ctctcgcgccggtac-tcgagtgttgtacaa-tttctataagtgatttgtgacccgttttccctatggaaaact 17392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 225
Target Start/End: Original strand, 4546 - 4703
Alignment:
Q  66 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 165  Q
    ||||| ||| ||||| ||||||||| ||   |||| | || ||| |||||||||||||| |||| ||||||| |||| || |||||| ||| ||||||||    
T  4546 aagttaaaagtgcagaaacttaaagaaataataaattgcattgctttaaaaataaaggtggttctacaaatcttttaaatgcattctgtataactctttt 4645  T
Q  166 ctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgacccgtttt 225  Q
    ||||||| ||||||| || | |||| ||||| ||| |||| |||||||| ||||||||||    
T  4646 ctctcgcgccggtac-tcaagtgttgtagaa-tttctataagtgatttgtgacccgtttt 4703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 86 - 250
Target Start/End: Complemental strand, 374275 - 374113
Alignment:
Q  86 taaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcga 185  Q
    |||||||||| |||| | || |||||||||||||||||| ||||||||||| ||||||||||||| | ||| ||||||||||||||| || |||||| ||    
T  374275 taaaggaaagataaattgcattgcattaaaaataaaggtggttcgacaaatactttacatacattttgtat-actcttttctctcgcgcctgtactttga 374177  T
Q  186 atgttttagaattttgtataggtgatttgcgacccgtttttctatggaaaactcttatttataca 250  Q
     |||| ||| | ||| |||| |||||||||||||  |||  ||||||||||||  ||||||||||    
T  374176 gtgttgtagca-tttctataagtgatttgcgaccgttttccctatggaaaactactatttataca 374113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 52; Significance: 3e-20; HSPs: 2)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 97 - 250
Target Start/End: Original strand, 20572 - 20725
Alignment:
Q  97 taaaatacaatgcattaaaaataaaggtagttcgacaaatccttt-acatacattctttatcactcttttctctcgctccggtacttcgaatgttttaga 195  Q
    |||| |||| |||||||||| ||||||| ||| |||||||  ||| ||||||||| | ||| ||||||||||||||| |||||||||||| |||||||||    
T  20572 taaattacattgcattaaaa-taaaggtggtttgacaaattatttcacatacattatgtataactcttttctctcgcgccggtacttcgagtgttttaga 20670  T
Q  196 attttgtataggtgatttgcgacccgt-ttttctatggaaaactcttatttataca 250  Q
    |  || | || |||||||||||||||| ||  |||||||||||| |||||||||||    
T  20671 a-gttctgtaagtgatttgcgacccgtcttgcctatggaaaactattatttataca 20725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 795 - 880
Target Start/End: Complemental strand, 12511 - 12426
Alignment:
Q  795 gaatggatttataaacaaaatggaaccaagaagggtaattgggttcaaaagacaaggtgaagtctgcactaggtaatgctgggaat 880  Q
    |||||||||||||  ||||||| ||||||| ||| ||  | ||||| |||||||| ||||||||||||||||| ||||||||||||    
T  12511 gaatggatttatagccaaaatgaaaccaaggaggatagcttggttcgaaagacaaagtgaagtctgcactaggcaatgctgggaat 12426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1102 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 114 - 250
Target Start/End: Complemental strand, 996 - 859
Alignment:
Q  114 aaaataaaggtagttcgacaaatccttt-acatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatt 212  Q
    ||||||||||| |||| ||||||| ||| ||||||||| | ||| |||||| | |||||| |||||||||||| |||||| ||| ||| |||| ||||||    
T  996 aaaataaaggttgttcaacaaatcattttacatacattatgtataactcttctttctcgcgccggtacttcgagtgttttggaa-tttctataagtgatt 898  T
Q  213 tgcgacccgtttttc-tatggaaaactcttatttataca 250  Q
    ||| ||||||||| | |||||||||||  ||||||||||    
T  897 tgcaacccgttttccgtatggaaaactactatttataca 859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 6035 - 5989
Alignment:
Q  258 taacttggaaagaaacgaatcccacaatcaacactccttccatgtag 304  Q
    |||||||||||||||| |||||||| |||| ||||| ||||||||||    
T  6035 taacttggaaagaaactaatcccacgatcagcactcgttccatgtag 5989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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