View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12378_low_3 (Length: 785)
Name: NF12378_low_3
Description: NF12378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12378_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 644; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 19 - 785
Target Start/End: Complemental strand, 40893951 - 40893187
Alignment:
| Q |
19 |
agtagttcattcagtcagctcaaaaccaaaacccacaaaaccataactctatcaaagagattcagatttgataccagaaacaaagacctaaacaccatta |
118 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40893951 |
agtagttccttcagtcagctcaaaaccaaaacccacaaaaccataagtctatcaaagagattcagatttgataccaaaaacaaagacctaaacaccatta |
40893852 |
T |
|
| Q |
119 |
gttcaaaacccatatgagaattacgaaataaggatctcataaaagaagtatcggagatagtataaattaaaacaatggtaccaaattttagtcttcttct |
218 |
Q |
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| T |
40893851 |
gttcaaaacccatatgagaatttcgaaataaggatctcataaaagaagtatcggagatagtataaattaaaacaatggtaccaaattttagtcttcttct |
40893752 |
T |
|
| Q |
219 |
aaatatgagtagaaattatgaatgtgaaaatctcctcttccaaatgaattctaggtttaagagggtgagaagatggatctaaaggaaatgattgtagagt |
318 |
Q |
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| T |
40893751 |
aaatatgagtagaaattatgaatgtgaaaatctcctcttcctgatgaattctaggtttaagagggtgagaagatggatctaaaggaaatgattgtagagt |
40893652 |
T |
|
| Q |
319 |
ttttgtaagaaaattgaaaagtcatggattctacatttgagaggttgtgaagatttaggttatttgagaagatagtgttgacttttgagttttgattctg |
418 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
40893651 |
ttttgtaagaagattgaaaagtcatggattctatgtttgagaggttgtgaagatttaggttatttgagaagatagtggtgacttttgagttttgattttg |
40893552 |
T |
|
| Q |
419 |
ggtttaataagttacctagaacttatgaatttttgatgttttatgatattttattttctaaataaatgtcaattaaaataaaagccaagttgtcaaagga |
518 |
Q |
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| T |
40893551 |
ggtttaataggttacctataacttatgaatttttgatgttttatgatattttattttctaaataaatgtcaattaaaataaaagccaagttgtcaaagga |
40893452 |
T |
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| Q |
519 |
aaaatccaatcaatcattataatatttatagtcagatgccacatcagcaaagttacaagacaaatcatcacacttaactgatgttaaaccttttggatta |
618 |
Q |
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| T |
40893451 |
aaaatccaatcaatcattataatatttctagtcagatgccacgtcagtaaagttacaagacaaatcatcacacttaactgatatttaaccttttggatta |
40893352 |
T |
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| Q |
619 |
aaatgattaatggagttaactttgaaggagtttttaataattttcgttgattcagggatgtgtccgatagcgagtgttactttcaaggacgaaaatgagg |
718 |
Q |
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| T |
40893351 |
aaatgattaatggagttaactttgaaggagtttttaataattttcgttgattcagggatgtgtctgatagcgagtgtcactttcaaggacgaaaatgagg |
40893252 |
T |
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| Q |
719 |
gtttactcctannnnnnnnnnaggctttagcatccatttgttttatttgcaaaacgagcatatattt |
785 |
Q |
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| T |
40893251 |
gtttactccta--tgttttttaggctttagcatccatttgttttatttacaaaatgagcatatattt |
40893187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 609 - 727
Target Start/End: Original strand, 11020332 - 11020450
Alignment:
| Q |
609 |
ttttggattaaaatgattaatggagttaactttgaaggagtttttaataattttcgttgattcagggatgtgtccgatagcgagtgttactttcaaggac |
708 |
Q |
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| T |
11020332 |
ttttggattaaattgactaatggaactaacattgagggagtttttaataatttctgttgatcgagggattggtctgatagcgagggacactttcagggac |
11020431 |
T |
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| Q |
709 |
gaaaatgagggtttactcc |
727 |
Q |
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| T |
11020432 |
ccaaatgagggtttactcc |
11020450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 644 - 715
Target Start/End: Original strand, 21402731 - 21402802
Alignment:
| Q |
644 |
aggagtttttaataattttcgttgattcagggatgtgtccgatagcgagtgttactttcaaggacgaaaatg |
715 |
Q |
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| T |
21402731 |
aggagcttttgataattttcattgatccagggacatgtcagacagcgagtgtcactttcaaggacgaaaatg |
21402802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 632 - 726
Target Start/End: Complemental strand, 9447701 - 9447607
Alignment:
| Q |
632 |
agttaactttgaaggagtttttaataattttcgttgattcagggatgtgtccgatagcgagtgttactttcaaggacgaaaatgagggtttactc |
726 |
Q |
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| T |
9447701 |
agttaacaatgagggagcttttgataattttcgttgattcagggacgtgtctgataacgaggtatactttcaggaactcaaataagggtttactc |
9447607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 609 - 726
Target Start/End: Original strand, 38517695 - 38517812
Alignment:
| Q |
609 |
ttttggattaaaatgattaatggagttaactttgaaggagtttttaataattttcgttgattcagggatgtgtccgatagcgagtgt-tactttcaagga |
707 |
Q |
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||||||| ||| |||| ||| ||||||||| ||| |||| |||| ||||||||||||||| |||||| ||||| |||||||| ||| |||||| | ||| |
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| T |
38517695 |
ttttggactaatatgactaacggagttaacaatgagggagcttttgataattttcgttgatccagggacgtgtctgatagcga-tgtatacttttaggga |
38517793 |
T |
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| Q |
708 |
cgaaaatgagggtttactc |
726 |
Q |
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| T |
38517794 |
ctcaaatgagggtttactc |
38517812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 609 - 723
Target Start/End: Complemental strand, 32564624 - 32564510
Alignment:
| Q |
609 |
ttttggattaaaatgattaatggagttaactttgaaggagtttttaataattttcgttgattcagggatgtgtccgatagcgagtgttactttcaaggac |
708 |
Q |
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|||||||||||| ||| | ||||| |||| |||| ||||||||||||||||| |||||| ||||| ||| ||||||||| | |||||||||||| |
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| T |
32564624 |
ttttggattaaattgactgatggaactaacattgagggagtttttaataatttatgttgatcgagggactggtctgatagcgagggacactttcaaggac |
32564525 |
T |
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| Q |
709 |
gaaaatgagggttta |
723 |
Q |
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| T |
32564524 |
ccaaatgagggttta |
32564510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 609 - 726
Target Start/End: Original strand, 36164520 - 36164637
Alignment:
| Q |
609 |
ttttggattaaaatgattaatggagttaactttgaaggagtttttaataattttcgttgattcagggatgtgtccgatagcgagtgttactttcaaggac |
708 |
Q |
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|||||||||||| ||| ||| ||| |||| |||| |||||||||||||||| |||||| ||||| ||| ||||||||| | ||||||| |||| |
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| T |
36164520 |
ttttggattaaattgactaacggaactaacattgagagagtttttaataatttctgttgatcgagggactggtctgatagcgagggacactttcagggac |
36164619 |
T |
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| Q |
709 |
gaaaatgagggtttactc |
726 |
Q |
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| T |
36164620 |
ccaaatgagggtttactc |
36164637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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