View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12378_low_4 (Length: 562)
Name: NF12378_low_4
Description: NF12378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12378_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Original strand, 8910013 - 8910557
Alignment:
| Q |
1 |
atcttctccttcactagggtttgaaccttgaatcattaactttttcaacttctttaactcttagctcaaatcagttgaacaagatttacaaagatcagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8910013 |
atcttctccttcactagggtttgaaccttgaatcattaactttttcaacttctttaactcttagctcaaatcagttgaacaagatttacaaagatcagtg |
8910112 |
T |
|
| Q |
101 |
gtattaattcaaatatttggatgaaacttattttggatgaactcattggtcttctcatacggagtcaatcttgctcaagaaagcgtcacacaatgaacgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8910113 |
gtattaattcaaatatttggatgaaacttattttggatgaactcattggtcttctcatacggagtcaatcttgctcaagaaagcgtcacacaatgaacgt |
8910212 |
T |
|
| Q |
201 |
atatgtctctatcaacaaagttcaacccgtggttcgccacactggaggaataattaacctttctgtttgactcaaccctcgttagtatttggacgaaaaa |
300 |
Q |
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| T |
8910213 |
atatgtctctatcgacaaagttcaactcgtggttcgccacactggaggaataa----cctttctgtttgactcaaccctcgttagtatttggacgaaaaa |
8910308 |
T |
|
| Q |
301 |
tttgaatcaacaaagaatatggccttacccataatttcattatgcttcaatgaatggaccagctctaagtgttgcatacatatcatgatcccaatcatct |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8910309 |
tttgaatcaacaaagaatatggccttacccataatttcattatgcttcaatgaatggaccaactctaagtgttgcatacatatcatgatcccaatcatct |
8910408 |
T |
|
| Q |
401 |
ttataaattttattaaatcgtaatttccttcaaaattgaactgcacataataacaaaaaattgttagcaatagcttattacaatccaagtaaatatatca |
500 |
Q |
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| T |
8910409 |
ttataaattttattaaatcgtaatttccttcaaaattgaactgcacataataacaaaaaattgttagcaatagcttattacaatccaagtaaatatatca |
8910508 |
T |
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| Q |
501 |
aatttggtcttaaaagatatgcagacattacatggccatgcacaggttc |
549 |
Q |
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| T |
8910509 |
aatttggtcttaaaagatatgcagacattacatggccatgcacaggttc |
8910557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 15165298 - 15165256
Alignment:
| Q |
36 |
ttaactttttcaacttctttaactcttagctcaaatcagttga |
78 |
Q |
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|||||| |||||||||| |||||||| |||||||||||||||| |
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| T |
15165298 |
ttaactctttcaacttcgttaactctaagctcaaatcagttga |
15165256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 11660546 - 11660575
Alignment:
| Q |
51 |
tctttaactcttagctcaaatcagttgaac |
80 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11660546 |
tctttaactcttagctcaaatcagttgaac |
11660575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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