View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12378_low_9 (Length: 241)
Name: NF12378_low_9
Description: NF12378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12378_low_9 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 11785609 - 11785374
Alignment:
| Q |
1 |
cagttatattccttgctagtggcacgaataaacggtcgtagatagggctgaagagaacaattgcaacaccgcctatcattccaagagaagcgggaggtat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11785609 |
cagttatattccttgctagtggcacgaataaacggtcgtagatagggctgaagagaacaattgcaacaccgcctatcattccaagagaagcgggaggtat |
11785510 |
T |
|
| Q |
101 |
gttgaaaccaggaaatattgttctctccatagaactcccttgcttagtgaagaatgtaaatatttgagcaaagataataccataaaccaaagttgaagcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
11785509 |
gttgaaaccaggaaatattgttctctccatagaactcccttgcttggtgaagaatgtaaatatttgagcaaagataataccataaactaaagtcgaagcc |
11785410 |
T |
|
| Q |
201 |
caaattggaatcaatcttagtactgcctttgcttct |
236 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |
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|
| T |
11785409 |
caaattggaatcaaccttagtactgcctttgcttct |
11785374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 11789185 - 11788961
Alignment:
| Q |
12 |
cttgctagtggcacgaataaacggtcgtagatagggctgaagagaacaattgcaacaccgcctatcattccaagagaagcgggaggtatgttgaaaccag |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
11789185 |
cttgctagtggcacgaataaacggtcgtagataggagtgaagagaacaatagcaacaccacctattgatccaagagaagcgggaggtatgttgaaaccag |
11789086 |
T |
|
| Q |
112 |
gaaatattgttctctccatagaactcccttgcttagtgaagaatgtaaatatttgagcaaagataataccataaaccaaagttgaagcccaaattggaat |
211 |
Q |
| |
|
|||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| |
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| T |
11789085 |
gaaatattgttctctccaaagaactcccttgtttggtgaagaatgtaaatatttgagcaaagataataccataaactaaagatgtagcccaaattggaat |
11788986 |
T |
|
| Q |
212 |
caatcttagtactgcctttgcttct |
236 |
Q |
| |
|
||| ||||||||||||||||||||| |
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| T |
11788985 |
caaacttagtactgcctttgcttct |
11788961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 11801352 - 11801128
Alignment:
| Q |
12 |
cttgctagtggcacgaataaacggtcgtagatagggctgaagagaacaattgcaacaccgcctatcattccaagagaagcgggaggtatgttgaaaccag |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
11801352 |
cttgctagtggcacgaataaacggtcgtagataggagtgaagagaacaatagcaacaccacctattgatccaagagaagcgggaggtatgttgaaaccag |
11801253 |
T |
|
| Q |
112 |
gaaatattgttctctccatagaactcccttgcttagtgaagaatgtaaatatttgagcaaagataataccataaaccaaagttgaagcccaaattggaat |
211 |
Q |
| |
|
|||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| |
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| T |
11801252 |
gaaatattgttctctccaaagaactcccttgtttggtgaagaatgtaaatatttgagcaaagataataccataaactaaagatgtagcccaaattggaat |
11801153 |
T |
|
| Q |
212 |
caatcttagtactgcctttgcttct |
236 |
Q |
| |
|
||| ||||||||||||||||||||| |
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| T |
11801152 |
caaacttagtactgcctttgcttct |
11801128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 11699357 - 11699133
Alignment:
| Q |
12 |
cttgctagtggcacgaataaacggtcgtagatagggctgaagagaacaattgcaacaccgcctatcattccaagagaagcgggaggtatgttgaaaccag |
111 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| | |||||||| |||||||||||||||| |||| || ||||||||| |||||||||| ||| |||| |
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|
| T |
11699357 |
cttgctagtggcacaaatatgcggtcgtagattgcgctgaagacaacaattgcaacaccgtttatcgtttgaagagaagcaggaggtatgtcgaagccag |
11699258 |
T |
|
| Q |
112 |
gaaatattgttctctccatagaactcccttgcttagtgaagaatgtaaatatttgagcaaagataataccataaaccaaagttgaagcccaaattggaat |
211 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||| ||||| | ||||||||||| ||| |||||||| ||||||| |||||||||||||| |
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|
| T |
11699257 |
gaaatattgttctctccattgaactcccttgcttggtgaagaaagtaaaaacttgagcaaagacaatgccataaactaaagttgtcgcccaaattggaat |
11699158 |
T |
|
| Q |
212 |
caatcttagtactgcctttgcttct |
236 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
11699157 |
taaccttagtactgcctttgcttct |
11699133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 11678172 - 11677948
Alignment:
| Q |
12 |
cttgctagtggcacgaataaacggtcgtagatagggctgaagagaacaattgcaacaccgcctatcattccaagagaagcgggaggtatgttgaaaccag |
111 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||||||||||||||||| |||||||| ||| ||| | ||| |||||||||||||||| || |||| |
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|
| T |
11678172 |
cttgctagcggcacgaatatgcggtcatagatagggctgaagagaagaattgcaagcccgttaatcgattgaagcgaagcgggaggtatgtcaaatccag |
11678073 |
T |
|
| Q |
112 |
gaaatattgttctctccatagaactcccttgcttagtgaagaatgtaaatatttgagcaaagataataccataaaccaaagttgaagcccaaattggaat |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| || ||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
11678072 |
gaaatattgttctctgcatagaactcccttgcttggtaaagaatgtaaaaacttgagcaaagataataccataaaccaaagttgtagcccaaattggaac |
11677973 |
T |
|
| Q |
212 |
caatcttagtactgcctttgcttct |
236 |
Q |
| |
|
||| |||||||| |||||||||||| |
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|
| T |
11677972 |
caaccttagtacagcctttgcttct |
11677948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 11686451 - 11686227
Alignment:
| Q |
12 |
cttgctagtggcacgaataaacggtcgtagatagggctgaagagaacaattgcaacaccgcctatcattccaagagaagcgggaggtatgttgaaaccag |
111 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||||||||||||||||| |||||||| ||| ||| | ||| |||||||||||||||| || |||| |
|
|
| T |
11686451 |
cttgctagcggcacgaatatgcggtcatagatagggctgaagagaagaattgcaagcccgttaatcgattgaagcgaagcgggaggtatgtcaaatccag |
11686352 |
T |
|
| Q |
112 |
gaaatattgttctctccatagaactcccttgcttagtgaagaatgtaaatatttgagcaaagataataccataaaccaaagttgaagcccaaattggaat |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| || ||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11686351 |
gaaatattgttctctgcatagaactcccttgcttggtaaagaatgtaaaaacttgagcaaagataataccataaaccaaagttgtagcccaaattggaac |
11686252 |
T |
|
| Q |
212 |
caatcttagtactgcctttgcttct |
236 |
Q |
| |
|
||| |||||||| |||||||||||| |
|
|
| T |
11686251 |
caaccttagtacagcctttgcttct |
11686227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 11708810 - 11708586
Alignment:
| Q |
12 |
cttgctagtggcacgaataaacggtcgtagatagggctgaagagaacaattgcaacaccgcctatcattccaagagaagcgggaggtatgttgaaaccag |
111 |
Q |
| |
|
||||||||||||||||||| | || |||||||||| ||||||||||||||||| | ||| || ||| |||| ||||||||||| || |||| |
|
|
| T |
11708810 |
cttgctagtggcacgaatatgtgctcatagatagggcagaagagaacaattgcaagccattttattgtttgaagcgaagagggaggtatgtcaaatccag |
11708711 |
T |
|
| Q |
112 |
gaaatattgttctctccatagaactcccttgcttagtgaagaatgtaaatatttgagcaaagataataccataaaccaaagttgaagcccaaattggaat |
211 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11708710 |
gaaatattgttctctccattgaagtcccttgcttggtgaagaatgtaaaaacttgagcaaagacaataccataaaccaaagttgaagtccaaattggaac |
11708611 |
T |
|
| Q |
212 |
caatcttagtactgcctttgcttct |
236 |
Q |
| |
|
||| ||||| || |||||||||||| |
|
|
| T |
11708610 |
caaccttagaacagcctttgcttct |
11708586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 20600 - 20376
Alignment:
| Q |
12 |
cttgctagtggcacgaataaacggtcgtagatagggctgaagagaacaattgcaacaccgcctatcattccaagagaagcgggaggtatgttgaaaccag |
111 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||| || | ||| | |||| || ||||||||| |||||||||| |||||||| |
|
|
| T |
20600 |
cttgctagtggcacaaatatacggtcgtagatagggctgaagagaactatggagacattggttatcgtttgaagagaagccggaggtatgtcgaaaccag |
20501 |
T |
|
| Q |
112 |
gaaatattgttctctccatagaactcccttgcttagtgaagaatgtaaatatttgagcaaagataataccataaaccaaagttgaagcccaaattggaat |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20500 |
gaaatattgttctctgcatagaactcccttgcttggtgaagaatgtaaaaacttgagcaaagataataccataaaccaaagttgtagcccaaattggaac |
20401 |
T |
|
| Q |
212 |
caatcttagtactgcctttgcttct |
236 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
20400 |
caaccttagtactgcctttgcttct |
20376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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