View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12379_high_3 (Length: 332)
Name: NF12379_high_3
Description: NF12379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12379_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 32142770 - 32143088
Alignment:
| Q |
1 |
gaagggagtcggctgaggaaaacgggggttgttaaaaggaagggaaatattctcttcattaacaacaccattttctctccgatgaaaatttcggtgacag |
100 |
Q |
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| T |
32142770 |
gaagggagttggctgaggaaaacgggggttgttaaaaggaagggaaatattctcttcattaacaacaccattttctctccgatgaaaatttcggtgacag |
32142869 |
T |
|
| Q |
101 |
ttacacgcagcacatgtgaaaaattcgatggttccttcaattccagcgggtaaaaactcgccacaaccatcaaaagcgtagcctccaatgctggaagcgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32142870 |
ttacacgcagcacatgtgaaaaattcgatggttccttcaattccagcgggtaaaaactcgccacaaccatcaagagcgtagcctccaatgctggaagcgt |
32142969 |
T |
|
| Q |
201 |
gattctttctacactctttgaagtttctttcaaagctattgctttgagaattcattagggtttcttcatcatgatcattcgaggttgtagttgtttcaac |
300 |
Q |
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| T |
32142970 |
gattctttctacactctttgaagtttctttcaaagctattgctttgagaattcattagggtttcttcaacatgatcattcgaggttgtagttgtttcaac |
32143069 |
T |
|
| Q |
301 |
gtaatttgttggttcagta |
319 |
Q |
| |
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|||| |||||||||||||| |
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| T |
32143070 |
gtaacttgttggttcagta |
32143088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 2 - 319
Target Start/End: Original strand, 28905668 - 28905985
Alignment:
| Q |
2 |
aagggagtcggctgaggaaaacgggggttgttaaaaggaagggaaatattctcttcattaacaacaccattttctctccgatgaaaatttcggtgacagt |
101 |
Q |
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| T |
28905668 |
aagggagtcggctgagggaaacgggggttgttaaaaggaagggaaatattctcttcattaacaacaccattttctctccgatgaaaatttcggtgacagt |
28905767 |
T |
|
| Q |
102 |
tacacgcagcacatgtgaaaaattcgatggttccttcaattccagcgggtaaaaactcgccacaaccatcaaaagcgtagcctccaatgctggaagcgtg |
201 |
Q |
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||||||| || ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
28905768 |
tacacgcggcgcatttgaaaaattcgatggtcccttcaattccagcgggtaaaaactcgccacaaccatcaagagcgtagcctccaatgctggaagcatg |
28905867 |
T |
|
| Q |
202 |
attctttctacactctttgaagtttctttcaaagctattgctttgagaattcattagggtttcttcatcatgatcattcgaggttgtagttgtttcaacg |
301 |
Q |
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||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| |
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| T |
28905868 |
attctttctacactctttgaacttttcttcgaagctattgctttgagaattcattagggtttcttcatcatgatgattcaaggttttagttgtttcaacg |
28905967 |
T |
|
| Q |
302 |
taatttgttggttcagta |
319 |
Q |
| |
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||| |||||||||||||| |
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| T |
28905968 |
taacttgttggttcagta |
28905985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 15978529 - 15978475
Alignment:
| Q |
142 |
tccagcgggtaaaaactcgccacaaccatcaaaagcgtagcctccaatgctggaa |
196 |
Q |
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|||||| ||||||||||| | ||||||||||| || |||||||||||| |||||| |
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| T |
15978529 |
tccagcaggtaaaaactcacgacaaccatcaagagagtagcctccaatactggaa |
15978475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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