View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12380_high_1 (Length: 918)
Name: NF12380_high_1
Description: NF12380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12380_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 751; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 751; E-Value: 0
Query Start/End: Original strand, 11 - 902
Target Start/End: Complemental strand, 38360181 - 38359290
Alignment:
| Q |
11 |
acctgtgataaccatgttgacaacatatctgacattgattatcttagcattaaatcttctttggtttatgcaaaaccagttggtgttgaagaagtgaatt |
110 |
Q |
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| T |
38360181 |
acctgagataaccatgttgacaacatatctgacattgattatcttagcattaaatcttctttggtttatgcaaaaccagatggtgttgaagcagtgaatt |
38360082 |
T |
|
| Q |
111 |
atggcagatagagcaaccaatctacaatgcggggaccaatttctttcagctatccttatgatgtccaaaaaacatgaaaagtttcaggtgattttgagaa |
210 |
Q |
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| T |
38360081 |
atggcagatagagcaaccagtctacattgtggggaccaatttcttttagctatccttatgatgtccaaaaaacttgaaaagtttcaggtgattttgagaa |
38359982 |
T |
|
| Q |
211 |
tgtgaaacaaccagg-ccaaatgtcataagagaaagtgcattcaaggaacatgtgagattgagtttcttgatttttccacaaagagaacaaatagaggga |
309 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38359981 |
tgtgaaacaaccaggaccaaatgtcataagagaaagtgcattcacggaacatgtgagattgagtttcttgatttttccacaaagagaaaaaatagaggga |
38359882 |
T |
|
| Q |
310 |
agcaaacaacctcttttcgcaagaatgtcatatgtggggagcttgttgagaagaatcctccaaacaagaagaggcttggaggggggcaatagtagcatgc |
409 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
38359881 |
agcaaacaacctcttttcgcaagaatgtcatctgtggggagcttgttgagaagaatcctccaaacaagaagaggcttggagggggacaatagcagcatta |
38359782 |
T |
|
| Q |
410 |
caaatagtttcagcgcaactaatgttttgaggatgaggggaagtatgaaaacgatatgcatctttaaaggagagacttccatcatgagatgacttccaaa |
509 |
Q |
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| T |
38359781 |
caaatagttttagcccaactaatgttttgaggatgaggggaagtatgaaaacgatatgcatctttaaaggagagacttccatcatgagatggcttccaaa |
38359682 |
T |
|
| Q |
510 |
tcagcttatcttccttgtaagaattaggaatggacaaaagtttcaacttctgttccaaaactgggcaaacaactaagatttcttaggagacactccactt |
609 |
Q |
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| T |
38359681 |
tcagcttatcttccttgtaagaattaggaatggacaaaagtttcaacttctgttccaaaactaggcaaacgactaagatttcttaggagacactccactt |
38359582 |
T |
|
| Q |
610 |
aaaattatgaatgcaagtatcaagagtagcttgtaaatgactatgaagatgggggaatgttaagtgcaattgtcaaaggctctctacaccaggaatcaat |
709 |
Q |
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| T |
38359581 |
aaaattatgaatgcaagtatcaagagtagcttgtaaatgactatgaagatgggggaatgttaagtgcagttgtcaaaggctctctacaccaggaatcaat |
38359482 |
T |
|
| Q |
710 |
ccagaagttaatattttccccatttcgaatatttcaagacacattttctagcacagtagagtatttatgcctagcaccaatcaaaacagatgaagaaaca |
809 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
38359481 |
ccagaagttaatattttccccatttccaatatttcaagacacattttctagcacagtagagtatttatgcctagcaccactcaaaacagatgacgaaaca |
38359382 |
T |
|
| Q |
810 |
tgataatcgactggnnnnnnngttccttaggatcctgcttctaatgaattgatcccattgtaaatctgattgcatgatatcccaacaaacttt |
902 |
Q |
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| T |
38359381 |
tgataattgactgg-ttttttgttccttaggatcctgcttctaatgaactgatcccattgtaaatctgattgcatgatatcccagcaaacttt |
38359290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 465 - 639
Target Start/End: Original strand, 18525907 - 18526081
Alignment:
| Q |
465 |
atgcatctttaaaggagagacttccatcatgagatgacttccaaatcagcttatcttccttgtaagaattaggaatggacaaaagtttcaacttctgttc |
564 |
Q |
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||||||||||||| || || | |||||||||||| ||||||||| |||||||| |||||||||| |||||||| |||| | ||||| || || | |
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| T |
18525907 |
atgcatctttaaatgataggttaccatcatgagattgcttccaaataagcttatcctccttgtaagtgttaggaattgacaccaacttcaatttttgctg |
18526006 |
T |
|
| Q |
565 |
caaaactgggcaaacaactaagatttcttaggagacactccacttaaaattatgaatgcaagtatcaagagtagc |
639 |
Q |
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| T |
18526007 |
aagaattgggcaagcaattaagatttcttgagggacacgccgcctaaaattgtgaatataagaatcaagagtagc |
18526081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 844 - 896
Target Start/End: Complemental strand, 11983901 - 11983849
Alignment:
| Q |
844 |
ctgcttctaatgaattgatcccattgtaaatctgattgcatgatatcccaaca |
896 |
Q |
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|||||||| || |||||| |||||||||||||||| ||||| ||||||||||| |
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| T |
11983901 |
ctgcttctcataaattgagcccattgtaaatctgactgcataatatcccaaca |
11983849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 843 - 897
Target Start/End: Complemental strand, 16182640 - 16182586
Alignment:
| Q |
843 |
cctgcttctaatgaattgatcccattgtaaatctgattgcatgatatcccaacaa |
897 |
Q |
| |
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||||||||||| |||||| |||||||||| ||||| |||||||| ||||||||| |
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| T |
16182640 |
cctgcttctaactaattgagcccattgtaagtctgactgcatgatgtcccaacaa |
16182586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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