View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12380_low_10 (Length: 240)
Name: NF12380_low_10
Description: NF12380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12380_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 53525489 - 53525277
Alignment:
| Q |
18 |
gcagtttgtcaaggagaaatatataattccacttgtaatgttgtaagcataggctaggctcatgggaaattaaattgtacgaagatagagggttttctgg |
117 |
Q |
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| T |
53525489 |
gcagtttgtcaaggagaaatatataattccacttgtaatgttgtaagcataggctaggctcatgggaaattaaattgtacgaagatagagggttttctgg |
53525390 |
T |
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| Q |
118 |
gtggttaatataaaagaaaatctaggtattcatacatggaatattcagattgcagtaaacttgaactaacttgaattttctaaaagactccggagtttga |
217 |
Q |
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| T |
53525389 |
gtggttaatataaaagaaaatctaggtattcatacatggaatattcagattgcagtaaacttgaactaacttgaattttctaaaagactccggagtttga |
53525290 |
T |
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| Q |
218 |
gtggatatcttag |
230 |
Q |
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||||||||||||| |
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| T |
53525289 |
gtggatatcttag |
53525277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 184
Target Start/End: Complemental strand, 53549094 - 53548931
Alignment:
| Q |
22 |
tttgtcaaggagaaatatataattccacttgtaatgt-tgtaagcataggctaggctcatgggaaattaaattgtacgaagatagagggttttctgggtg |
120 |
Q |
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| T |
53549094 |
tttgtcaaggagaaatatataattgcacttgtaaagtctgtaagcataggctaggctcatggaaaactaaattgtatgaagatagaggttgttctgggtg |
53548995 |
T |
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| Q |
121 |
gttaat------ataaaagaaaatctaggtattcatacatggaatattcagattgcagtaaacttgaact |
184 |
Q |
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| T |
53548994 |
gttcatgtcgtgattaaagaaaatctagg------tacatggaatattcagattatggtaaacttgaact |
53548931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 42 - 184
Target Start/End: Complemental strand, 53511304 - 53511155
Alignment:
| Q |
42 |
aattccacttgtaatgt-tgtaagcataggctaggctcatgggaaattaaattgtacgaagatagagggttttctgggtggttaat-ataaaagaaaatc |
139 |
Q |
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|||| |||||||||||| ||||||||||||||||| |||||| |||||||| | ||| |||||||||| ||||| ||| |||||| ||||||||||||| |
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| T |
53511304 |
aattgcacttgtaatgtctgtaagcataggctagggtcatggaaaattaaactatacaaagatagaggtttttcatggtagttaatgataaaagaaaatc |
53511205 |
T |
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| Q |
140 |
tag-----gtattcatacatggaatattcagattgcagtaaacttgaact |
184 |
Q |
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| T |
53511204 |
tagtattcatattcatacatggaatattcagattgcaggaaacttgaact |
53511155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 20197574 - 20197467
Alignment:
| Q |
50 |
ttgtaatgttgtaagcataggctaggctcatgggaaattaaattgtacg----aagatagagggttttctgggtggttaatataaaagaaaatctaggta |
145 |
Q |
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| T |
20197574 |
ttgtaatgttgtaagcataggctatgctcatggaaaattaagttatatgaagtaagttagaggttttcctgggtggttaa-ataacagaaaatctaggta |
20197476 |
T |
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| Q |
146 |
ttcatacat |
154 |
Q |
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||||||||| |
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| T |
20197475 |
ttcatacat |
20197467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 184
Target Start/End: Complemental strand, 53515009 - 53514856
Alignment:
| Q |
38 |
atataattccacttgtaatgt-tgtaagcataggctaggctcatgggaaattaaattgtacgaagatagagggttttctgggtggttaat-ataaaagaa |
135 |
Q |
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|||||||| || |||||||| |||||||||||||||||||||||| |||||||||| || || ||||||| ||||| |||||||| | ||||||||| |
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| T |
53515009 |
atataattgtacctgtaatgtctgtaagcataggctaggctcatggaaaattaaattatatgacaatagaggtttttcatggtggttagtgataaaagaa |
53514910 |
T |
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| Q |
136 |
aatctag-----gtattcatacatggaatattcagattgcagtaaacttgaact |
184 |
Q |
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| T |
53514909 |
aatctagtattcacattcatacacgaaatattcagattgcaggaaacttaaact |
53514856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 16608218 - 16608278
Alignment:
| Q |
112 |
ttctgggtggttaat-ataaaagaaaatctaggtat--tcatacatggaatattcagattg |
169 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16608218 |
ttctgggtggttaatgataaaagaaaatctaggtatattcatacatggaatattcagattg |
16608278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 16608163 - 16608200
Alignment:
| Q |
22 |
tttgtcaaggagaaatatataattccacttgtaatgtt |
59 |
Q |
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| T |
16608163 |
tttgtcaaggagaaatatagaattgcacttgtaatgtt |
16608200 |
T |
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