View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12380_low_3 (Length: 494)
Name: NF12380_low_3
Description: NF12380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12380_low_3 |
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| [»] scaffold0263 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 5 - 488
Target Start/End: Complemental strand, 22799767 - 22799279
Alignment:
| Q |
5 |
cagaacctgtgataatttcctgcaaaagcattaactatcaatcaaaacagcgataaatgagtaaaaatttaaagaagtttgaaaagtgaaaaacatggta |
104 |
Q |
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| T |
22799767 |
cagaaccagtgataatttcctgcaaaagcattaactatcaatcaaaacagcgataaatgagtaaaaatttaaag---tttgaaaagtgaaaaacatgata |
22799671 |
T |
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| Q |
105 |
actatgtctcatgcatacttctataagaatttgatttactgctaaaaaataataagttcagaaacaaaacaacaaaccggagctatgtactcttctgtgc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22799670 |
actatgtctcatgcatacttctataagaatttgattttctgctaaaaaataataagttcagaaacaa-----caaaccggagctatgtactcttctgtgc |
22799576 |
T |
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| Q |
205 |
caacaaaagaatttgatgctctcattggttcagccataaatattggagcttgttgtcctttcttcttgtcatttgtagttgaaattaaaagctatgaaga |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22799575 |
caacaaaagaatttgatgctctcattggttcagccataaatattggagcttgttgtcctttcttcttgtcatttgtagttgaaattaaaagctatgaaga |
22799476 |
T |
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| Q |
305 |
ataaagaatgaaatcagacacatttaaaattatttcagtgtagttaaaaggtattacatgtac-----cat--------aattatcttagatacctgtgg |
391 |
Q |
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| T |
22799475 |
ataaagaatgaaatcagacacatttaaaattatttcagtgtagttaaaaggtattacttgtacataaaaattatatgtcaattatcttagatacctgtgg |
22799376 |
T |
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| Q |
392 |
tttgcaagatgttaaacatgacaaatcaaaatctgttagagacacatgtccacttctctgtagtaacacattttctggcttcaaatccctatatatt |
488 |
Q |
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| T |
22799375 |
tttgcaagatgttaaacaggacaaatcaaaatctgttagagacacatgtccacttctctgtagtaacacattttctggcttcaaatccctatatatt |
22799279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 382 - 465
Target Start/End: Complemental strand, 19591982 - 19591899
Alignment:
| Q |
382 |
atacctgtggtttgcaagatgttaaacatgacaaatcaaaatctgt-tagagacacatgtccacttctctgtagtaacacatttt |
465 |
Q |
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| T |
19591982 |
atacctgtggtttgcaagatgttaaacatgccaaat-aaaatctgtcaagagacacatgtccattgctcactagtaatacatttt |
19591899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 380 - 478
Target Start/End: Complemental strand, 40963811 - 40963713
Alignment:
| Q |
380 |
agatacctgtggtttgcaagatgttaaacatgacaaatcaaaatctgttagagacacatgtccacttctctgtagtaacacattttctggcttcaaatc |
478 |
Q |
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| T |
40963811 |
agatacctgtggcttgcaagatgttaaacatgacaaatcaaaatctgttaaagacacatgcccatttctctggatcaacacattttctggcttcaaatc |
40963713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 40964036 - 40963968
Alignment:
| Q |
176 |
acaaaccggagctatgtactcttctgtgccaacaaaagaatttgatgctctcattggttcagccataaa |
244 |
Q |
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| T |
40964036 |
acaaaccggagctatgtactcttctgtaccaacaaaagaattggacgctctcattggttccgccataaa |
40963968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 477
Target Start/End: Complemental strand, 23709 - 23615
Alignment:
| Q |
382 |
atacctgtggtttgcaagatgttaaacatgacaaatcaaaatctgtta-gagacacatgtccacttctctgtagtaacacattttctggcttcaaat |
477 |
Q |
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| T |
23709 |
atacctgtgctttccaagatgttaaacacaccaaat-aaaatctgtcaagagacacatgtccactgctctctagtaatacatttt-tggcttcaaat |
23615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 465
Target Start/End: Complemental strand, 2308 - 2225
Alignment:
| Q |
382 |
atacctgtggtttgcaagatgttaaacatgacaaatcaaaatctgtta-gagacacatgtccacttctctgtagtaacacatttt |
465 |
Q |
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||||||||| ||| |||||||||||||| ||||| ||||||||| | |||||||||||||||| |||| |||||| ||||||| |
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| T |
2308 |
atacctgtgctttccaagatgttaaacacaccaaat-aaaatctgtcaagagacacatgtccactgctctctagtaatacatttt |
2225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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