View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12380_low_4 (Length: 465)
Name: NF12380_low_4
Description: NF12380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12380_low_4 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 17 - 465
Target Start/End: Complemental strand, 53525264 - 53524816
Alignment:
| Q |
17 |
gaaatgggagagatcttagtttacttctttgaattcttgtggtagtaaactgttggaatgtatattgcattaacatgtccattctgcctatcattttgaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53525264 |
gaaatgggagagatcttagtttacttctttgaattcttgtggtagtaaactgttggaatgtatattgcattaacatgtccattctgcctatcattttgaa |
53525165 |
T |
|
| Q |
117 |
cagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcctttcatgcaaaggtcacttgttgtcgatggcgtaaccggacagggtatactaaaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53525164 |
cagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcctttcatgcaaaggtcacttgttgtcgatggcgtaaccggacagggtatactaaaca |
53525065 |
T |
|
| Q |
217 |
ggtttgcctatgcttgtgnnnnnnnccatatacattgtcttgagttcttagtgtcgagcggtaatgcattacttttgttatatcccatgcatgtagcgtt |
316 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53525064 |
ggtttgcctatgcttgtgtttttttccatatacattgtcttgagttcttagtgtcgagcggtaatgcattacttttgttatatcccatgcatgtagcgtt |
53524965 |
T |
|
| Q |
317 |
cgaactagttcaggaacatttctggagagaggaaaagacaaaattgtgcagaatgttgaacggagaattgctgatattacctccataccaataggtatga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53524964 |
cgaactagttcaggaacatttctggagagaggaaaagacaaaattgtgcagaatgttgaacggagaattgctgatattacctccataccaataggtatga |
53524865 |
T |
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| Q |
417 |
gtttttgtgtaatacctgtgtacacatgtttgcctctttcccttcatct |
465 |
Q |
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| T |
53524864 |
gtttttgtgtaatacctgtgtacacatgtttgcctctttcccttcatct |
53524816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 62 - 422
Target Start/End: Complemental strand, 53511099 - 53510744
Alignment:
| Q |
62 |
taaactgttggaatgtatattgcattaacatgtccattctgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcct |
161 |
Q |
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|||||||||||||| ||||||| ||||| ||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53511099 |
taaactgttggaatttatattgtattaaaatgtccacttttcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcct |
53511000 |
T |
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| Q |
162 |
ttcatgcaaaggtcacttgttgtcgatggcgtaaccggacagggtatactaaacaggtttgcctatgcttgtgnnnnnnnccatatacattgtcttgagt |
261 |
Q |
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| T |
53510999 |
ttcatgacaagatcgcttgttgttgatggcttgactggaaagggtagagaaagcaggtttgcatattattttttt------catgtacattttcttgaga |
53510906 |
T |
|
| Q |
262 |
tcttagtgtcg-agcggtaatgcattacttttgttatatcccatgcatgtagcgttcgaactagttcaggaacatttctggagagaggaaaagacaaaat |
360 |
Q |
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||||||| || ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
53510905 |
gaatagtgtcttagtggtaatgcattacttttaatatatcccctgcatgtagcgctcgaactagttcaggaaggtttctggagagaggaaaggacaaaat |
53510806 |
T |
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| Q |
361 |
tgtgcagaatgttgaacggagaattgctgatattacctccataccaataggtatgagttttt |
422 |
Q |
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||| |||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
53510805 |
tgtccagaatattgaacagagaattgctgatattacctccataccagtaggtatgagttttt |
53510744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 62 - 234
Target Start/End: Complemental strand, 53514788 - 53514616
Alignment:
| Q |
62 |
taaactgttggaatgtatattgcattaacatgtccattctgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcct |
161 |
Q |
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|||||||||||||| ||||||| ||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53514788 |
taaactgttggaatctatattgtattaaaacctccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcct |
53514689 |
T |
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| Q |
162 |
ttcatgcaaaggtcacttgttgtcgatggcgtaaccggacagggtatactaaacaggtttgcctatgcttgtg |
234 |
Q |
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| T |
53514688 |
ttcatggcaagatcacttgttgtcgatggcgtaactggagaggttaaagaaagcaggtttgcctatgcttgtg |
53514616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 24 - 234
Target Start/End: Complemental strand, 20197458 - 20197244
Alignment:
| Q |
24 |
gagagatcttagtttacttctttgaattcttgtggtagtaaactgttggaat----gtatattgcattaacatgtccattctgcctatcattttgaacag |
119 |
Q |
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|||| ||||||||||| |||||| ||||||||||||| |||||||||||||| |||||||| ||||| ||||||||| ||||||||||||||||||| |
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| T |
20197458 |
gagaaatcttagtttagttctttcaattcttgtggtactaaactgttggaatttgagtatattgtattaaaatgtccattatgcctatcattttgaacag |
20197359 |
T |
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| Q |
120 |
tcaaaagaagaatgtgagcatttgatcaatcttgccaagcctttcatgcaaaggtcacttgttgtcgatggcgtaaccggacagggtatactaaacaggt |
219 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||| | || |||| |||| || |||| ||||||| |||||||| |||||||| |
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| T |
20197358 |
tcaaaagaagaatgtgagcatttgatcaaacttggcaagccttacttggaaagatcacgcatttccgataaaagaaccggaaagggtatagaaaacaggt |
20197259 |
T |
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| Q |
220 |
ttgcctatgcttgtg |
234 |
Q |
| |
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||||||||||||||| |
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| T |
20197258 |
ttgcctatgcttgtg |
20197244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 267 - 463
Target Start/End: Complemental strand, 53514549 - 53514352
Alignment:
| Q |
267 |
gtgtcgagcggtaatgcattacttttgttatatcccatgcatgt--agcgttcgaactagttcaggaacatttctggagagaggaaaagacaaaattgtg |
364 |
Q |
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||||| || |||||||||| ||||||| |||||||| ||| ||| ||| ||||||||||||||||| |||||||| |||||||| ||||||||||| |
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| T |
53514549 |
gtgtccagtggtaatgcat-acttttgatatatcccctgcctgtgtagctctcgaactagttcaggaatgtttctggatagaggaaaggacaaaattgtc |
53514451 |
T |
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| Q |
365 |
cagaatgttgaacggagaattgctgatattacctccataccaataggtatgagtttttgtgtaatacctgtgtacacatgtttgcctctttcccttcat |
463 |
Q |
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| T |
53514450 |
cagaatattgaacggagaattgctgatattacctccgtaccaataggtatgagtatttgtgtgatatctatgtctacctgtttgcctctttctcttcat |
53514352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 265 - 425
Target Start/End: Complemental strand, 53548593 - 53548433
Alignment:
| Q |
265 |
tagtgtcgagcggtaatgcattacttttgttatatcccatgcatgtagcgttcgaactagttcaggaacatttctggagagaggaaaagacaaaattgtg |
364 |
Q |
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||||||| || |||||||||||||| | | |||||||| | | ||||| ||||||||||||||||||| |||||| |||||||||| ||||||||| | |
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| T |
53548593 |
tagtgtctagtggtaatgcattactctagatatatccccttcctgtagggttcgaactagttcaggaatgtttctgaagagaggaaaggacaaaattatc |
53548494 |
T |
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| Q |
365 |
cagaatgttgaacggagaattgctgatattacctccataccaataggtatgagtttttgtg |
425 |
Q |
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|||||| ||||| |||||||||||||| |||||| ||||||| |||||||||||||||||| |
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| T |
53548493 |
cagaatattgaaaggagaattgctgattttaccttcataccagtaggtatgagtttttgtg |
53548433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 53548883 - 53548735
Alignment:
| Q |
18 |
aaatgggagagatcttagtttacttctttgaattcttgtgg--tagtaaactgttggaatgtatattgcattaacatgtccattctgcctatcattttga |
115 |
Q |
| |
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||||| |||| || |||||||| ||||||||| ||||||| ||||||||||||||||| ||||||| ||||| ||||| ||||| |||| |||| ||| |
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| T |
53548883 |
aaatgagagacatattagtttatttctttgaagtcttgtgtgttagtaaactgttggaatttatattgtattaaaatgtcaattcttcctaccattgtga |
53548784 |
T |
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| Q |
116 |
acagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcctttc |
164 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
53548783 |
acagtccaaagaagaatgtgagcatttgatcaatctggccaagcctttc |
53548735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 32 - 158
Target Start/End: Original strand, 16608366 - 16608492
Alignment:
| Q |
32 |
ttagtttacttctttgaattcttgtggtagtaaactgttggaatgtatattgcattaacatgtccattctgcctatcattttgaacagtcaaaagaagaa |
131 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||| ||||| ||| |||||||||||||| ||| |||||| ||||| |
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| T |
16608366 |
ttagtttacttctttgaattcttatggtagtaatctgttggaatttatattgtattaaaatgtctattatgcctatcattttgtacaatcaaaataagaa |
16608465 |
T |
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| Q |
132 |
tgtgagcatttgatcaatcttgccaag |
158 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
16608466 |
tgtgagcatttgatcaatcttgccaag |
16608492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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