View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12380_low_5 (Length: 409)
Name: NF12380_low_5
Description: NF12380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12380_low_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 12 - 409
Target Start/End: Complemental strand, 4776302 - 4775901
Alignment:
| Q |
12 |
aacctgtgtctactcccatggccacctcattctgctcacaacctaaacccgactccacatactgtgacagtaaggaatttcgcagtatacttggtgcctt |
111 |
Q |
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| T |
4776302 |
aacctgtgtctactcccatggccacctcattctgctcacaacctaaacccgactccacatactgtgacagtaaggaatttcgcagtatgcttggtgcctt |
4776203 |
T |
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| Q |
112 |
acactacctttcaatcactcgcccagacatagcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaag |
211 |
Q |
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| T |
4776202 |
acactacctttcaatcactcgcccagacattgcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaag |
4776103 |
T |
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| Q |
212 |
agagtattgcgctatctcaaatccaccatctccaatggactccatctcacaagatcttcaaatacaagcctcacaagcttttgtgatgcagattaggcag |
311 |
Q |
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| T |
4776102 |
agagtattgcgctatctcaaatccaccatctccaatggactccatctcacaagatcttcaaatacaaacctcacaagcttttgtgatgcagattaggcag |
4776003 |
T |
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| Q |
312 |
gagacacaattgacagga----aacaggtgcttatttaatttatattggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatc |
407 |
Q |
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| T |
4776002 |
gagacacaattgacaggaaatcaacaggtgcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatc |
4775903 |
T |
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| Q |
408 |
gt |
409 |
Q |
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| T |
4775902 |
gt |
4775901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 275 - 407
Target Start/End: Complemental strand, 43061400 - 43061264
Alignment:
| Q |
275 |
acaagcctcacaagcttttgtgatgcagattaggcaggagacacaattgacagga----aacaggtgcttatttaatttatattggccctaatattatct |
370 |
Q |
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| T |
43061400 |
acaagcctcacaaacttttgtgatgcagattgggcaggagacacaattgacaggatatgaacaggtgcttatttcatttattttggccctaatattatct |
43061301 |
T |
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| Q |
371 |
cttggtcatgcaagaagcaaccaacaattgcaaaatc |
407 |
Q |
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| T |
43061300 |
cttggtcatgcaagaagcagccaacagttgcaaaatc |
43061264 |
T |
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