View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12380_low_7 (Length: 329)
Name: NF12380_low_7
Description: NF12380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12380_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 15 - 311
Target Start/End: Original strand, 31066032 - 31066333
Alignment:
| Q |
15 |
cacagacaccacctttgggttttctgcatatatattgaaaatatcttgtagtgaggtttaaaaattaaaacatttagatagatctacaaaatttgttttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31066032 |
cacagacaccacctttgggttttctgcatatatattgaaaatatcttgtagtgaggtttaaaaattaaaacatttagatagatctacaaaatttgttttt |
31066131 |
T |
|
| Q |
115 |
ctgacttgcaagttgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgcctcctct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31066132 |
ctgacttgcaagttgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgcctcctct |
31066231 |
T |
|
| Q |
215 |
ttactgtgaatgatcagtatataatagttaatcaatc-----aatttcctctaaagaaaagcttgagctgaatattgtagcagttattatatataccttc |
309 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31066232 |
ttactgtgaatgatcagtatacaatagttaatcaatcaatttaatttcctctaaagaaaagcttgagctgaatattgtagcagttattatatataccttc |
31066331 |
T |
|
| Q |
310 |
ct |
311 |
Q |
| |
|
|| |
|
|
| T |
31066332 |
ct |
31066333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 112 - 270
Target Start/End: Original strand, 31054585 - 31054743
Alignment:
| Q |
112 |
tttctgacttgcaagttgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgcctcc |
211 |
Q |
| |
|
|||| ||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||| |||||| | | |
|
|
| T |
31054585 |
tttccgacttgcaatttgtgcagcctcttcctcttcaagtatagctgcaaagccattgatctgtttattatatgaataaattattgctttttttgcattc |
31054684 |
T |
|
| Q |
212 |
tctttactgtgaatgatcagtatataatagttaatcaatcaatttcctctaaagaaaag |
270 |
Q |
| |
|
|| || ||||||||||||| |||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
31054685 |
tccttgctgtgaatgatcaatatatattagttaatcaatcaatttcttctaaagaaaag |
31054743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 112 - 285
Target Start/End: Original strand, 31149816 - 31149995
Alignment:
| Q |
112 |
tttctgacttgcaagttgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgcctcc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||| |||| ||||||| |
|
|
| T |
31149816 |
tttctgacttgcaagttgtgcagcttcttcctcttcaagtatagctgcaaagccattaatctgtttattatatgaataaattattgcctcttctgcctcc |
31149915 |
T |
|
| Q |
212 |
tctttactgtgaatgatca------gtatataatagttaatcaatcaatttcctctaaagaaaagcttgagctgaatatt |
285 |
Q |
| |
|
|| | ||||||||||||| |||||| ||||||||| |||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
31149916 |
tcgtggctgtgaatgatcaatatatatatatattagttaatcgatcaatttcctctatagaaaagcttaagctgaatatt |
31149995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 112 - 285
Target Start/End: Original strand, 31168108 - 31168287
Alignment:
| Q |
112 |
tttctgacttgcaagttgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgcctcc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||| |||| ||||||| |
|
|
| T |
31168108 |
tttctgacttgcaagttgtgcagcttcttcctcttcaagtatagctgcaaagccattaatctgtttattatatgaataaattattgcctcttctgcctcc |
31168207 |
T |
|
| Q |
212 |
tctttactgtgaatgatca------gtatataatagttaatcaatcaatttcctctaaagaaaagcttgagctgaatatt |
285 |
Q |
| |
|
|| | ||||||||||||| |||||| ||||||||| |||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
31168208 |
tcgtggctgtgaatgatcaatatatatatatattagttaatcgatcaatttcctctatagaaaagcttaagctgaatatt |
31168287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 118 - 246
Target Start/End: Original strand, 31113381 - 31113509
Alignment:
| Q |
118 |
acttgcaagttgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgcctcctcttta |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| | ||| || |
|
|
| T |
31113381 |
acttgcaatttgtgcagcttcttcctcttcaagcatagctgcaaagccattaatctgtttattatatgaataaattattgcttcttttgcattctccttg |
31113480 |
T |
|
| Q |
218 |
ctgtgaatgatcagtatataatagttaat |
246 |
Q |
| |
|
||||||||||||| |||||| |||||||| |
|
|
| T |
31113481 |
ctgtgaatgatcaatatatattagttaat |
31113509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 31197207 - 31197130
Alignment:
| Q |
130 |
tgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgc |
207 |
Q |
| |
|
|||||||||||| |||||||| | ||| |||||||||||||| ||||| || || |||||||| |||||||||||||| |
|
|
| T |
31197207 |
tgcagcttcttcatcttcaagtagagcagcaaagccattgatgtgtttgttatatgaataaatgattgcttcttttgc |
31197130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 31054463 - 31054503
Alignment:
| Q |
15 |
cacagacaccacctttgggttttctgcatatatattgaaaa |
55 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
31054463 |
cacagacaccacctttggattttctgcatatgtgttgaaaa |
31054503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 24265660 - 24265577
Alignment:
| Q |
118 |
acttgcaagttgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttc |
201 |
Q |
| |
|
|||||||| || ||| |||||||| ||||||| | ||| ||||| |||||||| ||||||||||| || |||| ||||||||| |
|
|
| T |
24265660 |
acttgcaatttttgctgcttcttctacttcaagtacagcagcaaaaccattgatgtgtttattgtatgagtaaaatattgcttc |
24265577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University