View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12381_high_1 (Length: 361)
Name: NF12381_high_1
Description: NF12381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12381_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 29 - 307
Target Start/End: Original strand, 29736381 - 29736659
Alignment:
| Q |
29 |
atgtatagggtattcatcttcatcatccatttgaatatcgaaatctggaacatggtaattcattttgcttcgcttctgtttagttgaattgaactgaaaa |
128 |
Q |
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| T |
29736381 |
atgtatagggtattcatcttcatcatccatttgaatatcgaaatctggaacatggtaattcattttgcttcgcttctgtttagttgaattgaactgaaaa |
29736480 |
T |
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| Q |
129 |
ggaaacaaataacaagcaattaaaattaaagtatcaagtagaaatagtaattaaattctaaaaaatgaacaacttactattgaagctagttagctgatcc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29736481 |
ggaaacaaataacaagcaattaaaattaaagtatcaagtagaaatagtaattaaattctaaaaaatgaacaacttactattgaagctagttagctgatcc |
29736580 |
T |
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| Q |
229 |
agaacatagtgagcaaattaaaactaagattaatttgtgtggagcttaaatttttgttgcttgatttgaatgaattgag |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29736581 |
agaacatagtgagcaaattaaaactaagattaatttgtgtggagcttaaatttttgttgcttgatttgaatgaattgag |
29736659 |
T |
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