View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12382_high_1 (Length: 736)

Name: NF12382_high_1
Description: NF12382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12382_high_1
NF12382_high_1
[»] chr4 (13 HSPs)
chr4 (18-725)||(37478568-37479274)
chr4 (106-345)||(44973170-44973408)
chr4 (578-725)||(10766585-10766732)
chr4 (79-360)||(27382818-27383087)
chr4 (99-254)||(50132264-50132417)
chr4 (86-197)||(9590996-9591107)
chr4 (213-325)||(9591153-9591265)
chr4 (431-602)||(9591358-9591530)
chr4 (18-67)||(27383117-27383166)
chr4 (18-67)||(50132467-50132516)
chr4 (405-509)||(44973042-44973146)
chr4 (18-62)||(44973470-44973514)
chr4 (452-509)||(50132208-50132265)
[»] chr2 (13 HSPs)
chr2 (18-725)||(15806786-15807492)
chr2 (18-646)||(39281637-39282264)
chr2 (18-344)||(860657-860987)
chr2 (406-601)||(861035-861231)
chr2 (86-344)||(14000567-14000822)
chr2 (79-345)||(4415898-4416162)
chr2 (572-725)||(40151567-40151720)
chr2 (571-725)||(6784995-6785149)
chr2 (86-197)||(40098491-40098602)
chr2 (18-73)||(32607854-32607909)
chr2 (502-597)||(40098188-40098284)
chr2 (18-67)||(14000859-14000908)
chr2 (431-509)||(14000447-14000525)
[»] chr6 (6 HSPs)
chr6 (18-493)||(11164291-11164764)
chr6 (89-345)||(25171001-25171255)
chr6 (576-721)||(4313342-4313487)
chr6 (578-666)||(29113405-29113493)
chr6 (86-325)||(31209475-31209712)
chr6 (18-67)||(25170913-25170962)
[»] chr8 (10 HSPs)
chr8 (18-467)||(37802608-37803075)
chr8 (406-718)||(15144012-15144325)
chr8 (79-345)||(15143702-15143966)
chr8 (499-709)||(10268286-10268497)
chr8 (86-325)||(10268593-10268830)
chr8 (79-197)||(11032197-11032315)
chr8 (499-621)||(11032537-11032660)
chr8 (84-197)||(9185823-9185936)
chr8 (18-70)||(15143623-15143675)
chr8 (84-193)||(38884132-38884241)
[»] chr1 (6 HSPs)
chr1 (18-467)||(51545278-51545744)
chr1 (79-644)||(23171929-23172502)
chr1 (89-345)||(43869381-43869635)
chr1 (578-725)||(47265464-47265611)
chr1 (571-725)||(33601234-33601384)
chr1 (18-67)||(43869672-43869721)
[»] chr7 (19 HSPs)
chr7 (86-714)||(23964798-23965425)
chr7 (99-345)||(31914152-31914396)
chr7 (79-345)||(46867031-46867297)
chr7 (89-345)||(6057544-6057798)
chr7 (79-345)||(17199678-17199945)
chr7 (79-345)||(25972439-25972706)
chr7 (536-725)||(66277-66466)
chr7 (18-73)||(31914440-31914495)
chr7 (618-704)||(12902860-12902946)
chr7 (79-149)||(48456807-48456877)
chr7 (355-408)||(31914074-31914127)
chr7 (18-70)||(23965459-23965511)
chr7 (241-325)||(48456665-48456749)
chr7 (238-315)||(12903147-12903224)
chr7 (18-67)||(25972360-25972409)
chr7 (436-509)||(25972761-25972834)
chr7 (19-67)||(6057835-6057883)
chr7 (84-127)||(32839868-32839911)
chr7 (18-67)||(17199974-17200023)
[»] scaffold0092 (1 HSPs)
scaffold0092 (18-326)||(35267-35573)
[»] scaffold0204 (2 HSPs)
scaffold0204 (18-345)||(28988-29318)
scaffold0204 (406-601)||(29364-29561)
[»] scaffold0129 (3 HSPs)
scaffold0129 (99-345)||(5141-5385)
scaffold0129 (18-74)||(5428-5484)
scaffold0129 (355-408)||(5063-5116)
[»] chr3 (11 HSPs)
chr3 (89-350)||(5126509-5126768)
chr3 (89-344)||(5133770-5134023)
chr3 (79-350)||(54093258-54093527)
chr3 (106-345)||(41624426-41624663)
chr3 (578-725)||(41016975-41017122)
chr3 (79-325)||(7589964-7590208)
chr3 (18-61)||(5126811-5126854)
chr3 (18-67)||(5134060-5134109)
chr3 (18-67)||(41624720-41624769)
chr3 (18-62)||(54093562-54093606)
chr3 (258-325)||(17238473-17238540)
[»] chr5 (3 HSPs)
chr5 (84-313)||(15458096-15458322)
chr5 (84-154)||(27076184-27076254)
chr5 (84-127)||(25510242-25510285)
[»] scaffold0146 (1 HSPs)
scaffold0146 (258-325)||(15659-15726)


Alignment Details
Target: chr4 (Bit Score: 578; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 18 - 725
Target Start/End: Original strand, 37478568 - 37479274
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactcgaacaatatcaggtgtaggacccctcactagtgtttacttaggcctctca 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| |||||||||||||    
T  37478568 gaacttaggttgacttgaaccggatggaccataatttggatatggcactcgaacaatgtcaggtgcaggacccctcactggtgtttgcttaggcctctca 37478667  T
Q  118 tttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatcatatcagtccctatttaataaataaaaatcaat 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||| |||||    
T  37478668 tttgaaataactggacctctaatgccatacctctttgcaggaacacactgcaacaacagtttcaatcatatcagtccatatttaataaa--aaattcaat 37478765  T
Q  218 caaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaagcactgcttcatttgcaacaccattgaca 317  Q
    ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37478766 caagttagtccctgaatttccacacttactagaaaatcgatccttagaatctaacattcatacctgtctaagcactgcttcatttgcaacaccattgaca 37478865  T
Q  318 tcattttgttcctgaattgcaacatttctaacactggcattttgtgcagcttgtccatcatttccaactacaacatgtccaggattaacatttccaacat 417  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  37478866 tcattttgtccctgaattgcaacatttccaacactgacattttgtgcagtttgtccatcatttccagctacaacatgtccaggattaacattttcaacat 37478965  T
Q  418 tttctgtaacacctccaccatttttagcaacatgattttctgcatttcctagtacatttccaacattttatgcattctctccaacattttcttcttctgg 517  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37478966 tttctgcaacacctccaccattttcagcaacatgattttctgcatttcctggtacatttccaacattttctgcattctctccaacattttcttcttctgg 37479065  T
Q  518 ctcagtatcaatctaat-atttggtctcctagcaacaccttggttattatatcctcttaagttatgaccaatcaatccacaccttccacattgagtgtca 616  Q
    ||||||||||||| |||  ||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37479066 ctcagtatcaatccaatcttttggtctcctagcaacaccttgcttattacatcctcttaaattatgaccaatcaatccacaccttccacattgagtgtca 37479165  T
Q  617 ttgtaagccctcttcatttgactcccaccaacaggttcctcattgccatcttttctcctgttcttctttggtcttcctgcagcccttctcacctttggtg 716  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37479166 ttgtaagtcctcttcatttgactcccaccaacaggtttctcattgccatcttttctcctgttcttctttggtcttcctgcagcccttctcacctttggtg 37479265  T
Q  717 gcacaggtt 725  Q
     ||||||||    
T  37479266 tcacaggtt 37479274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 106 - 345
Target Start/End: Complemental strand, 44973408 - 44973170
Alignment:
Q  106 ttaggcctctcatttgaaataactggacctctaat--gtcatacctctttgcaggaacacactgcaacaacagtttcaatcatatcagtccctatttaat 203  Q
    |||||||||||||||||||||| ||| ||||||||  ||||||||||  || ||||||||  |||||||||| ||||||||||||||||||||| || |     
T  44973408 ttaggcctctcatttgaaataattggccctctaatatgtcatacctccatggaggaacaccttgcaacaacaatttcaatcatatcagtccctaattcaa 44973309  T
Q  204 aaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaagcactgcttcatttg 303  Q
    |||      |||||||||| ||||| | ||||  |||||||||||| ||||||||||||| ||| ||||| ||||||||||| ||||||| |||||||||    
T  44973308 aaacct---tcaatcaaataagtccttaaattattacacttactagcaaatcgatccttaaaatttaacagtcatacctgtccaagcactacttcatttg 44973212  T
Q  304 caacaccattgacatcattttgttcctgaattgcaacatttc 345  Q
    |||||||||||||| |||||||| ||||||||||||||||||    
T  44973211 caacaccattgacaacattttgtccctgaattgcaacatttc 44973170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 578 - 725
Target Start/End: Complemental strand, 10766732 - 10766585
Alignment:
Q  578 ttatgaccaatcaatccacaccttccacattgagtgtcattgtaagccctcttcatttgactcccaccaacaggttcctcattgccatcttttctcctgt 677  Q
    |||||||||| |||||||||||| |||||||||||||||||||| | | |||||||  ||||||||| ||||||||||||||| ||||| ||||| |||     
T  10766732 ttatgaccaagcaatccacacctcccacattgagtgtcattgtatgtcttcttcatcagactcccacaaacaggttcctcattaccatcctttcttctgg 10766633  T
Q  678 tcttctttggtcttcctgcagcccttctcacctttggtggcacaggtt 725  Q
      |||||||||||||||| ||||||| | |||||||||||||||||||    
T  10766632 ctttctttggtcttcctggagcccttttaacctttggtggcacaggtt 10766585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 79 - 360
Target Start/End: Complemental strand, 27383087 - 27382818
Alignment:
Q  79 ggtgtaggacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtt 178  Q
    |||| ||||||||||||||||||||   |||||||||||||| |||||| ||| |||||||||||||||||| ||| |||          ||||||| ||    
T  27383087 ggtgcaggacccctcactagtgtttgactaggcctctcatttaaaataattggccctctaatgtcatacctccttgtagg----------aacaacattt 27382998  T
Q  179 tcaatcatatcagtccctatttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcat 278  Q
    ||||||||| |||||||||  | ||||  || | |||||||||| ||||||| ||||   ||||| || |  ||||||||| |||  || ||||| ||||    
T  27382997 tcaatcataacagtccctaaatcataa--aacattcaatcaaataagtccctaaattataacactaacaatcaaatcgatcattaagatttaacagtcat 27382900  T
Q  279 acctgtctaagcactgcttcatttgcaacaccattgacatcattttgttcctgaattgcaacatttctaacactggcatttt 360  Q
     | |||| | ||||| |||||||||||||| ||||||||  ||||||| |||||||||||||||||| |||| || ||||||    
T  27382899 gcatgtccatgcactacttcatttgcaacaacattgacaagattttgtccctgaattgcaacatttccaacattgacatttt 27382818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 99 - 254
Target Start/End: Complemental strand, 50132417 - 50132264
Alignment:
Q  99 tgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatcatatcagtccctat 198  Q
    ||||| |||||| |||||||||||||||| |||  |||| ||| |||||||  |||||||||||| ||||||||||| |||||||||| ||||||||||     
T  50132417 tgtttgcttaggtctctcatttgaaataattggctctctgatgccataccttcttgcaggaacaccctgcaacaacattttcaatcatctcagtccctaa 50132318  T
Q  199 ttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaat 254  Q
    || ||||  || | |||||||||| ||||||| ||||  |||||||||||| ||||    
T  50132317 ttcataa--aacattcaatcaaatcagtccctaaattattacacttactagcaaat 50132264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 9590996 - 9591107
Alignment:
Q  86 gacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatca 185  Q
    ||||||||| |  ||||| |||||||||||||||| |||||| ||| |||||||||  || |||| |||||||||||||||||||||||| |||||||||    
T  9590996 gacccctcattgatgtttgcttaggcctctcatttaaaataattggtcctctaatgctatgcctccttgcaggaacacactgcaacaacattttcaatca 9591095  T
Q  186 tatcagtcccta 197  Q
     |||||| ||||    
T  9591096 aatcagttccta 9591107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 213 - 325
Target Start/End: Original strand, 9591153 - 9591265
Alignment:
Q  213 tcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaagcactgcttcatttgcaacaccat 312  Q
    |||||||||| ||||||| ||||  |||||||||||| ||||||||||||| ||| ||| | ||||||||||  | ||||| |||||||||||||| |||    
T  9591153 tcaatcaaataagtccctaaattattacacttactagcaaatcgatccttaaaatttaagagtcatacctgttcaggcactacttcatttgcaacaacat 9591252  T
Q  313 tgacatcattttg 325  Q
    ||||| |||||||    
T  9591253 tgacaacattttg 9591265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 431 - 602
Target Start/End: Original strand, 9591358 - 9591530
Alignment:
Q  431 tccaccatttttagcaacatgattttctgcatttcctagta---catttccaacattttatgcattctctccaacattttcttcttctggctcagtatca 527  Q
    |||| |||||| ||||||| ||||||||||||||||| |||   ||||||||||||||| ||||||   | |   ||||||||||||||||||| || ||    
T  9591358 tccaacattttcagcaacaagattttctgcatttcctggtacatcatttccaacattttctgcatt---ttcggtattttcttcttctggctcaatacca 9591454  T
Q  528 atctaat-atttggtctcctagcaacaccttggttattatatcctcttaagttatgaccaatcaatccacaccttc 602  Q
    || ||||  |||||||||||| ||||||| || |    | |||||||| |||||||||||||||||||||||||||    
T  9591455 atataatcttttggtctcctatcaacaccctgctgcacacatcctcttgagttatgaccaatcaatccacaccttc 9591530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 27383166 - 27383117
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactc 67  Q
    ||||||||||||| |||||||||||| |||||||||||||||||| ||||    
T  27383166 gaacttaggttgagttgaaccggatgaaccataatttggatatggaactc 27383117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 50132516 - 50132467
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactc 67  Q
    ||||||||||||| |||||||||||| |||||||||||||||||| ||||    
T  50132516 gaacttaggttgagttgaaccggatggaccataatttggatatggtactc 50132467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 509
Target Start/End: Complemental strand, 44973146 - 44973042
Alignment:
Q  405 acatttccaacattttctgtaacacctccaccatttttagcaacatgattttctgcatttcctagtacatttccaacattttatgcattctctccaacat 504  Q
    |||||| ||||||||| || |||   |||| |||||| ||||||| |||||||||||||||||  ||||  ||||||||||| ||||    |||||||||    
T  44973146 acattttcaacattttgtgcaacttgtccatcattttcagcaacaagattttctgcatttcctgatacacctccaacattttctgcaacacctccaacat 44973047  T
Q  505 tttct 509  Q
    |||||    
T  44973046 tttct 44973042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 44973514 - 44973470
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatgg 62  Q
    ||||||||||||| || ||||||||| ||||||||||||||||||    
T  44973514 gaacttaggttgagttaaaccggatggaccataatttggatatgg 44973470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 509
Target Start/End: Complemental strand, 50132265 - 50132208
Alignment:
Q  452 attttctgcatttcctagtacatttccaacattttatgcattctctccaacattttct 509  Q
    ||||||||||||||||  |||||||||| |||||| ||||   |||||||||||||||    
T  50132265 attttctgcatttcctgatacatttccagcattttctgcaacatctccaacattttct 50132208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 578; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 18 - 725
Target Start/End: Original strand, 15806786 - 15807492
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactcgaacaatatcaggtgtaggacccctcactagtgtttacttaggcctctca 117  Q
    |||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||| ||||||||||||| |||||| |||||| ||||||    
T  15806786 gaacataggttgacttgaaccggatggaccataacttggatatggcactcgaacaatgtcaggtgcaggacccctcactggtgtttgcttaggtctctca 15806885  T
Q  118 tttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatcatatcagtccctatttaataaataaaaatcaat 217  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||| |||||    
T  15806886 tttgaaataactggacctctaatgccatacctctttgcaggaacacactgcaacaacaatttcaatcatatcagtccctatttaataaa--aaattcaat 15806983  T
Q  218 caaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaagcactgcttcatttgcaacaccattgaca 317  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15806984 caaattagtccctgaatttctacacttactagaaaatcgatctttagaatctaacattcatacctgtctaagcactgcttcatttgcaacaccattgaca 15807083  T
Q  318 tcattttgttcctgaattgcaacatttctaacactggcattttgtgcagcttgtccatcatttccaactacaacatgtccaggattaacatttccaacat 417  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15807084 tcattttgtccctgaattgcaacatttccaacactggcattttgtgcagcttgtccatcatttccagctacaacatgtccaggattaacatttccaacat 15807183  T
Q  418 tttctgtaacacctccaccatttttagcaacatgattttctgcatttcctagtacatttccaacattttatgcattctctccaacattttcttcttctgg 517  Q
    |||||| | ||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  15807184 tttctgcagcacctccaccattttcagcaacgtgattttctgcatttcctggtacatttccaacattttctgcattctctccaacattttcctcttctgg 15807283  T
Q  518 ctcagtatcaatctaa-tatttggtctcctagcaacaccttggttattatatcctcttaagttatgaccaatcaatccacaccttccacattgagtgtca 616  Q
    ||||||||||||| || | ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807284 ctcagtatcaatccaattttttggtctcctagcaacaccttgcttattacatcctcttaagttatgaccaatcaatccacaccttccacattgagtgtca 15807383  T
Q  617 ttgtaagccctcttcatttgactcccaccaacaggttcctcattgccatcttttctcctgttcttctttggtcttcctgcagcccttctcacctttggtg 716  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807384 ttgtaagtcctcttcatttgactcccaccaacaggtttctcattgccatcttttctcctgttcttctttggtcttcctgcagcccttctcacctttggtg 15807483  T
Q  717 gcacaggtt 725  Q
    |||||||||    
T  15807484 gcacaggtt 15807492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 18 - 646
Target Start/End: Complemental strand, 39282264 - 39281637
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactcgaacaatatcaggtgtaggacccctcactagtgtttacttaggcctctca 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| |||||||||||||    
T  39282264 gaacttaggttgacttgaaccggatggaccataatttggatatggcactcgaacaatgtcaggtgcaggacccctcactggtgtttgcttaggcctctca 39282165  T
Q  118 tttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatcatatcagtccctatttaataaataaaaatcaat 217  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||| |||||    
T  39282164 tttgaaataactggacctctaataccatacctctttgcaggaacacactgcaacaacagtttcaatcataacagtccctatttaataaa--aaattcaat 39282067  T
Q  218 caaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaagcactgcttcatttgcaacaccattgaca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39282066 caaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaagcactgcttcatttgcaacaccattgaca 39281967  T
Q  318 tcattttgttcctgaattgcaacatttctaacactggcattttgtgcagcttgtccatcatttccaactacaacatgtccaggattaacatttccaacat 417  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  39281966 tcattttgtccctgaattgcaacatttccaacactggcattttgtgcagcttgtccatcatttccagctacaacatgtctaagattaacatttccaacat 39281867  T
Q  418 tttctgtaacacctccaccatttttagcaacatgattttctgcatttcctagtacatttccaacattttatgcattctctccaacattttcttcttctgg 517  Q
    |||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39281866 tttctgcaacacctccaccattttcaccaacatgattttctgcatttcctagtacatttccaacattttctgcattctctccaacattttcttcttctgg 39281767  T
Q  518 ctcagtatcaatctaat-atttggtctcctagcaacaccttggttattatatcctcttaagttatgaccaatcaatccacaccttccacattgagtgtca 616  Q
     |||||||||||| |||  ||| ||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39281766 ttcagtatcaatccaatcttttagtctcctagcaacaccttgcttattacatcctcttaaattatgaccaatcaatccacaccttccacattgagtgtca 39281667  T
Q  617 ttgtaagccctcttcatttgactcccacca 646  Q
    ||||||| ||||||||||||||||||||||    
T  39281666 ttgtaagtcctcttcatttgactcccacca 39281637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 860657 - 860987
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactcgaa-ca-----atatca-ggtgtaggacccctcactagtgtttacttagg 110  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||     || | | |||| || || ||||||| |||||| ||||||    
T  860657 gaacttaggttgacttgaaccggatggaccataatttggatatggcacttgaagcagttggatgtgatggtgcagaactcctcactggtgtttgcttagg 860756  T
Q  111 cctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatcatatcagtccctatttaataaataaa 210  Q
    ||||||||||||||||| ||| ||||||||| |||||||| || ||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||  |     
T  860757 cctctcatttgaaataattggccctctaatgccatacctccttccagtaacactctgcaacaagagtttcaatcataccagtccctatttaataaa--ac 860854  T
Q  211 aatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaagcactgcttcatttgcaacacc 310  Q
    | || ||||||||||||  |||||| ||||||||||||||||||||||||||||||| ||||| ||| |||||| |||||||||||||||||||||||||    
T  860855 attcgatcaaattagtcattgaatt-ctacacttactagaaaatcgatccttagaatttaacagtcacacctgtgtaagcactgcttcatttgcaacacc 860953  T
Q  311 attgacatcattttgttcctgaattgcaacattt 344  Q
    |||| ||||||||||| | ||||||||| |||||    
T  860954 attggcatcattttgtccatgaattgcatcattt 860987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 406 - 601
Target Start/End: Original strand, 861035 - 861231
Alignment:
Q  406 catttccaacattttctgtaacacctccaccatttttagcaacatgattttctgcatttcctagtacatttccaacattttatgcattctctccaacatt 505  Q
    |||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| || |||||||    
T  861035 catttccaacattttctgcaacacctccacccttttcagcaacatgattttctgcatttcctggtacatttccaacattttctgcattcccttcaacatt 861134  T
Q  506 ttcttcttctggctcagtatcaatctaat-atttggtctcctagcaacaccttggttattatatcctcttaagttatgaccaatcaatccacacctt 601  Q
    |||||||||||||||| |||||||| | |  |||||||||||||||||| |||| |||||| |||||||||||||||||| ||||||||||||||||    
T  861135 ttcttcttctggctcaatatcaatccagtcttttggtctcctagcaacatcttgcttattacatcctcttaagttatgacaaatcaatccacacctt 861231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 86 - 344
Target Start/End: Complemental strand, 14000822 - 14000567
Alignment:
Q  86 gacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatca 185  Q
    ||||||||| | ||||||  |||||||||||||||||||||| ||| |||||||||||||||||| | | | |||||  |  |||||||| |||||||||    
T  14000822 gacccctcattggtgtttgtttaggcctctcatttgaaataattggccctctaatgtcatacctcctggtaagaacagccaacaacaacaatttcaatca 14000723  T
Q  186 tatcagtccctatttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtc 285  Q
    |||||||||||| || ||||   | | |||||||||||||||||| ||||  |||||||||||| ||||||||||||| ||| ||||| |||||| ||||    
T  14000722 tatcagtccctaattcataag--acattcaatcaaattagtccctaaatta-tacacttactagcaaatcgatccttaaaatttaacagtcatacttgtc 14000626  T
Q  286 taagcactgcttcatttgcaacaccattgacatcattttgttcctgaattgcaacattt 344  Q
     || |||| ||||||||| |||| |||||||| ||||||||  ||||||||||||||||    
T  14000625 caatcactacttcatttgtaacatcattgacaacattttgtctctgaattgcaacattt 14000567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 79 - 345
Target Start/End: Original strand, 4415898 - 4416162
Alignment:
Q  79 ggtgtaggacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtt 178  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||| ||  | ||||||| ||||| || ||| || ||||| || |||||||| ||    
T  4415898 ggtgcaggacccctcactagtgttttcttaggcctctcatttgaaataattgaccgtctaatgccatacatccttgtagaaacaccctacaacaacattt 4415997  T
Q  179 tcaatcatatcagtccctatttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcat 278  Q
    ||||||||||||||| |||  | | ||  || | |||||||||| ||||||| ||||    |||| ||||  ||||||||| |||  || ||||| ||||    
T  4415998 tcaatcatatcagtctctaaatcacaa--aacattcaatcaaataagtccctaaattatatcactaactatcaaatcgatctttaagatttaacagtcat 4416095  T
Q  279 acctgtctaagcactgcttcatttgcaacaccattgacatcattttgttcctgaattgcaacatttc 345  Q
    || ||||||  |||| |||||||||||||| || ||| | || ||||| ||||||||||||||||||    
T  4416096 acatgtctagacactacttcatttgcaacaacactgagagcactttgtccctgaattgcaacatttc 4416162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 572 - 725
Target Start/End: Original strand, 40151567 - 40151720
Alignment:
Q  572 cttaagttatgaccaatcaatccacaccttccacattgagtgtcattgtaagccctcttcatttgactcccaccaacaggttcctcattgccatcttttc 671  Q
    |||||||||||| ||| |||| || || |  | |||||||||||||||||||   ||||||| | ||||| || ||||||||||||||||||||| |||     
T  40151567 cttaagttatgaacaaacaattcatacatgtcgcattgagtgtcattgtaagtattcttcatgttactcctacaaacaggttcctcattgccatccttta 40151666  T
Q  672 tcctgttcttctttggtcttcctgcagcccttctcacctttggtggcacaggtt 725  Q
    | |||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  40151667 ttctgttcttctttggtcttcccgcatcccttctcacctttggtggcacaggtt 40151720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 571 - 725
Target Start/End: Original strand, 6784995 - 6785149
Alignment:
Q  571 tcttaagttatgaccaatcaatccacaccttccacattgagtgtcattgtaagccctcttcatttgactcccaccaacaggttcctcattgccatctttt 670  Q
    |||| ||||||| || |||||| |||| |||||||||||||||||||| || |   |||||||   ||||||||||| |||||| ||||||||||| |||    
T  6784995 tcttgagttatgtcccatcaattcacatcttccacattgagtgtcattataggttttcttcatgccactcccaccaataggttcttcattgccatccttt 6785094  T
Q  671 ctcctgttcttctttggtcttcctgcagcccttctcacctttggtggcacaggtt 725  Q
    ||||| |||||||| ||||||||||| | |||| |||||||||||||||||||||    
T  6785095 ctcctattcttcttaggtcttcctgctgaccttttcacctttggtggcacaggtt 6785149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 86 - 197
Target Start/End: Complemental strand, 40098602 - 40098491
Alignment:
Q  86 gacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatca 185  Q
    ||||||||||| |||||||||||||||||| |||| |||||| ||| ||||||||  |||||||| | | |||||||  ||||||||||| ||||| |||    
T  40098602 gacccctcactggtgtttacttaggcctctgatttaaaataattggccctctaataccatacctcctagtaggaacatcctgcaacaacattttcattca 40098503  T
Q  186 tatcagtcccta 197  Q
     |||||||||||    
T  40098502 aatcagtcccta 40098491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 32607854 - 32607909
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactcgaacaa 73  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  32607854 gaacttaggttgacttgaactggatgaaccataatttggatatggcactcgaacaa 32607909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 597
Target Start/End: Complemental strand, 40098284 - 40098188
Alignment:
Q  502 cattttcttcttctggctcagtatcaatctaata-tttggtctcctagcaacaccttggttattatatcctcttaagttatgaccaatcaatccaca 597  Q
    ||||||||||||||| | ||||||||||| | |  |||||||||||| |||||||||| ||  |  | |||||| ||||||||||||||||||||||    
T  40098284 cattttcttcttctgccccagtatcaatccagtcctttggtctcctatcaacaccttgcttcatgcaacctcttgagttatgaccaatcaatccaca 40098188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 14000908 - 14000859
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactc 67  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||| ||||    
T  14000908 gaacttaggttgagttgaatcggatggaccataatttggatatggtactc 14000859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 431 - 509
Target Start/End: Complemental strand, 14000525 - 14000447
Alignment:
Q  431 tccaccatttttagcaacatgattttctgcatttcctagtacatttccaacattttatgcattctctccaacattttct 509  Q
    |||| |||||| ||||||| |||||||||||||||||  ||||||| || |||||| ||||    ||||||||||||||    
T  14000525 tccatcattttcagcaacaagattttctgcatttcctgatacattttcagcattttctgcaacacctccaacattttct 14000447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Complemental strand, 11164764 - 11164291
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactcgaacaatatcaggtgtaggacccctcactagtgtttacttaggcctctca 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||| || ||| |||||| ||||||    
T  11164764 gaacttaggttgacttgaaccggatggaccataatttggatatggcactcgaacaatgtcaggtgcaggacccctcactggtatttgcttaggtctctca 11164665  T
Q  118 tttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatcatatcagtccctatttaataaataaaaatcaat 217  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||| |||||    
T  11164664 tttgaaataattggacctctaatgccatacctctttgcaggaacacactgcaacaacattttcaatcatatcagtccctatttaataaa--aaattcaat 11164567  T
Q  218 caaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaagcactgcttcatttgcaacaccattgaca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11164566 caaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaagcactgcttcatttgcaacaccattgaca 11164467  T
Q  318 tcattttgttcctgaattgcaacatttctaacactggcattttgtgcagcttgtccatcatttccaactacaacatgtccaggattaacatttccaacat 417  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11164466 tcattttgtccctgaattgcaacatttccaacactggcattttgtgcagcttgtccatcatttccagctacaacatgtccaggattaacatttccaacat 11164367  T
Q  418 tttctgtaacacctccaccatttttagcaacatgattttctgcatttcctagtacatttccaacattttatgcatt 493  Q
    |||||  ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  11164366 tttctacaacacctccaccattttcagcaacatgattttctgcatttcctggtacatttccaacattttctgcatt 11164291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 89 - 345
Target Start/End: Original strand, 25171001 - 25171255
Alignment:
Q  89 ccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatcatat 188  Q
    |||||||| |||||| |||||||||||||||||||| || ||| |||||||| ||||||||| ||| |||||||| ||||||||||| ||||||||||||    
T  25171001 ccctcactggtgtttgcttaggcctctcatttgaaacaattggccctctaatttcatacctccttgaaggaacaccctgcaacaacattttcaatcatat 25171100  T
Q  189 cagtccctatttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaa 288  Q
    || ||| ||  | |||||  | | |||||||||| ||||||| ||||    |||| ||||  |||||||||||||  || ||||| ||||||||||||||    
T  25171101 cattccgtaaatcataaa--acattcaatcaaataagtccctaaattatatcactaactatcaaatcgatccttaagatttaacaatcatacctgtctaa 25171198  T
Q  289 gcactgcttcatttgcaacaccattgacatcattttgttcctgaattgcaacatttc 345  Q
     |||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  25171199 acactacttcatttgcaacaacattgacatcattttgtccctgaattgcaacatttc 25171255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 576 - 721
Target Start/End: Original strand, 4313342 - 4313487
Alignment:
Q  576 agttatgaccaatcaatccacaccttccacattgagtgtcattgtaagccctcttcatttgactcccaccaacaggttcctcattgccatcttttctcct 675  Q
    |||||||||||| ||||||| |||  |||||||||||||||||||||  | ||||||| | ||||| || |||| | |||||||||||||| |||||| |    
T  4313342 agttatgaccaaacaatccatacccgccacattgagtgtcattgtaaatcttcttcatgttactcctacaaacatgctcctcattgccatcctttctctt 4313441  T
Q  676 gttcttctttggtcttcctgcagcccttctcacctttggtggcaca 721  Q
    |||||||||||||||||||||| | | |||||||||||||||||||    
T  4313442 gttcttctttggtcttcctgcaacacgtctcacctttggtggcaca 4313487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 578 - 666
Target Start/End: Complemental strand, 29113493 - 29113405
Alignment:
Q  578 ttatgaccaatcaatccacaccttccacattgagtgtcattgtaagccctcttcatttgactcccaccaacaggttcctcattgccatc 666  Q
    |||||||||| |||||||||||| |||||||||||||||||||| | | ||||||| |||||||||| ||||||||||||||| |||||    
T  29113493 ttatgaccaagcaatccacacctcccacattgagtgtcattgtatgtcttcttcatctgactcccacaaacaggttcctcattaccatc 29113405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 86 - 325
Target Start/End: Complemental strand, 31209712 - 31209475
Alignment:
Q  86 gacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatca 185  Q
    ||||||||||| |||||| |||||||||||||||| |||||| ||| ||||||||||||||  || ||  || ||||| ||||||  |||  ||||||||    
T  31209712 gacccctcactggtgttttcttaggcctctcatttaaaataattggtcctctaatgtcatatatccttatagtaacaccctgcaattacatattcaatca 31209613  T
Q  186 tatcagtccctatttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtc 285  Q
     |||| | ||||  | ||||   | | |||||||||| ||||| | ||||  ||||||||| || ||||||||||||| ||| ||| | |||||| ||||    
T  31209612 aatcaattcctaaattataa--catattcaatcaaatcagtccttaaattattacacttaccagcaaatcgatccttaaaatttaagagtcatacatgtc 31209515  T
Q  286 taagcactgcttcatttgcaacaccattgacatcattttg 325  Q
     | | ||| |||||||| ||||| ||||| || |||||||    
T  31209514 caggaactacttcatttccaacaacattgtcagcattttg 31209475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 25170913 - 25170962
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactc 67  Q
    ||||||||||||| |||||||||||| |||||||||| ||||||| ||||    
T  25170913 gaacttaggttgagttgaaccggatggaccataatttcgatatggaactc 25170962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Complemental strand, 37803075 - 37802608
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactcgaacaatatcagg------------------tgtaggacccctcactagt 99  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||                  || ||||||||||||| ||    
T  37803075 gaacttaggttgacttgaaccggatggaccataatttggatatggcactcgaacaacgtcaggagcaattggatgtgatgatgcaggacccctcactggt 37802976  T
Q  100 gtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatcatatcagtccctatt 199  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37802975 gtttgcttaggcctctcatttgaaataattggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaaccatatcagtccctatt 37802876  T
Q  200 taataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaagcactgcttca 299  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  37802875 taataaaaaaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacttgtataagcactgcttca 37802776  T
Q  300 tttgcaacaccattgacatcattttgttcctgaattgcaacatttctaacactggcattttgtgcagcttgtccatcatttccaactacaacatgtccag 399  Q
     || ||||||||||||||||||||||| | |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37802775 cttacaacaccattgacatcattttgtccatgaattgcaacatttccaacactgacattttgtgcagcttgtccatcatttccaactacaacatgtccag 37802676  T
Q  400 gattaacatttccaacattttctgtaacacctccaccatttttagcaacatgattttctgcatttcct 467  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||    
T  37802675 gattaacatttccaacattttctgcaacacctccaccattttcagcaacatgattttatgcatttcct 37802608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 406 - 718
Target Start/End: Original strand, 15144012 - 15144325
Alignment:
Q  406 catttccaacattttctgtaacacctccaccatttttagcaacatgattttctgcatttcctagtacatttccaacattttatgcattctctccaacatt 505  Q
    |||||||| | | ||||| ||||||||||||||||| |||||||||||||||||||||  || |||||||||| ||||| | ||||||| || |||||||    
T  15144012 catttccagcgtcttctgcaacacctccaccattttcagcaacatgattttctgcattgactggtacatttccgacattatctgcattcccttcaacatt 15144111  T
Q  506 ttcttcttctggctcagtatcaatctaatattt-ggtctcctagcaacaccttggttattatatcctcttaagttatgaccaatcaatccacaccttcca 604  Q
    ||||||||||||||||||||||||||| | ||| |||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| ||||||    
T  15144112 ttcttcttctggctcagtatcaatctagtcttttggtctcctagcaaccccttgcttattacatcctcttaagttatgaccaatcaatccacatcttcca 15144211  T
Q  605 cattgagtgtcattgtaagccctcttcatttgactcccaccaacaggttcctcattgccatcttttctcctgttcttctttggtcttcctgcagcccttc 704  Q
    ||||||||||||||||||| ||| ||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  15144212 cattgagtgtcattgtaagtccttttcatttgactcctaccaataggttccttattgccatcttttcttctgttcttctttggtcttcctgcagcccttc 15144311  T
Q  705 tcacctttggtggc 718  Q
    ||||||||||||||    
T  15144312 tcacctttggtggc 15144325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 79 - 345
Target Start/End: Original strand, 15143702 - 15143966
Alignment:
Q  79 ggtgtaggacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtt 178  Q
    |||| ||||||||| | | ||||||  |||||| |||| ||||||||||  ||  || ||||| |||||||| |||||||||||| ||||||| | ||||    
T  15143702 ggtgcaggaccccttaatggtgtttgattaggcatctcttttgaaataataggcactttaatgccatacctccttgcaggaacaccctgcaaccatagtt 15143801  T
Q  179 tcaatcatatcagtccctatttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcat 278  Q
    |||||||||| |||||||   | |||||  | | ||||| ||||||||||||||||||||| ||||||||  ||||||| ||||||||| ||||| ||||    
T  15143802 tcaatcatattagtcccttacttataaa--acattcaattaaattagtccctgaatttctatacttactattaaatcgacccttagaatttaacagtcat 15143899  T
Q  279 acctgtctaagcactgcttcatttgcaacaccattgacatcattttgttcctgaattgcaacatttc 345  Q
    |||||| |||||||| ||||||||||||||||||||||| |||||||| | ||||||||| ||||||    
T  15143900 acctgtgtaagcactacttcatttgcaacaccattgacaacattttgtccatgaattgcatcatttc 15143966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 499 - 709
Target Start/End: Complemental strand, 10268497 - 10268286
Alignment:
Q  499 caacattttcttcttctggctcagtatcaatctaatattt-ggtctcctagcaacaccttggttattatatcctcttaagttatgaccaatcaatccaca 597  Q
    |||||||||||||||||||||||||||||||| | | ||| ||||||||| |||||||  | ||   | | | |||| |||||||||||||||||||||     
T  10268497 caacattttcttcttctggctcagtatcaatccagtcttttggtctcctatcaacaccccgcttcacacaacttcttgagttatgaccaatcaatccacg 10268398  T
Q  598 ccttccacattgagtgtcattgtaagccctcttcatttgactcccaccaacaggttcctcattgccatcttttctcctgttcttctttggtcttcctgca 697  Q
    |||| ||||||||||||||||||||| | ||||||| | |||||||  |||| ||||||||||| |||| |||||| |||||||||||||||||| ||||    
T  10268397 cctttcacattgagtgtcattgtaagtcttcttcatgttactcccataaacatgttcctcattgacatcctttctcgtgttcttctttggtcttcttgca 10268298  T
Q  698 gcccttctcacc 709  Q
     |||||||||||    
T  10268297 acccttctcacc 10268286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 86 - 325
Target Start/End: Complemental strand, 10268830 - 10268593
Alignment:
Q  86 gacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatca 185  Q
    ||||||||||| |||||| |||||| ||||||||| ||||||  || |||||||||||||||||| ||| || ||||| ||||||  ||| |||||||||    
T  10268830 gacccctcactggtgttttcttaggtctctcatttaaaataataggtcctctaatgtcatacctccttgtagtaacaccctgcaattacattttcaatca 10268731  T
Q  186 tatcagtccctatttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtc 285  Q
     |||||||||||  | ||||   | | |||||||||  ||| | | ||||  ||||| |||||| ||||||||||||| ||| ||| | | |||| ||||    
T  10268730 aatcagtccctaaattataa--catattcaatcaaaccagttcttaaattattacacatactagcaaatcgatccttaaaatttaagagttatacttgtc 10268633  T
Q  286 taagcactgcttcatttgcaacaccattgacatcattttg 325  Q
     | ||||| |||||||||||||| ||||| || |||||||    
T  10268632 catgcactacttcatttgcaacaacattgtcagcattttg 10268593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 79 - 197
Target Start/End: Original strand, 11032197 - 11032315
Alignment:
Q  79 ggtgtaggacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtt 178  Q
    |||||||||||||| ||| ||||||  ||||||||||||||||||||||  || |||||||||||||||||| ||| || |||||  |||||  ||| ||    
T  11032197 ggtgtaggacccctaactggtgtttgtttaggcctctcatttgaaataataggtcctctaatgtcatacctccttgtagtaacaccttgcaattacattt 11032296  T
Q  179 tcaatcatatcagtcccta 197  Q
    ||||||| |||||||||||    
T  11032297 tcaatcaaatcagtcccta 11032315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 499 - 621
Target Start/End: Original strand, 11032537 - 11032660
Alignment:
Q  499 caacattttcttcttctggctcagtatcaatctaatattt-ggtctcctagcaacaccttggttattatatcctcttaagttatgaccaatcaatccaca 597  Q
    ||||||||||||||||| |||||||||||||| | | ||| ||||||||| ||||||  || ||   | | | |||| ||||||||||||||||||||||    
T  11032537 caacattttcttcttctagctcagtatcaatccagtcttttggtctcctatcaacactctgcttcacacaacttcttgagttatgaccaatcaatccaca 11032636  T
Q  598 ccttccacattgagtgtcattgta 621  Q
    |||| |||||| ||||||||||||    
T  11032637 cctttcacattaagtgtcattgta 11032660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 84 - 197
Target Start/End: Complemental strand, 9185936 - 9185823
Alignment:
Q  84 aggacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaat 183  Q
    |||||||||||||  ||||| ||| ||||||||||||||||||| |||  |||||||||||||| || ||| || ||||| ||||||  | | |||||||    
T  9185936 aggacccctcactgttgtttgctttggcctctcatttgaaataattggttctctaatgtcatacatccttgtagtaacaccctgcaattaaattttcaat 9185837  T
Q  184 catatcagtcccta 197  Q
    || |||||||||||    
T  9185836 caaatcagtcccta 9185823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 15143623 - 15143675
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactcgaa 70  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  15143623 gaacttaggttgacttgaaccggatggaccataatctggatatggcactcgaa 15143675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 84 - 193
Target Start/End: Complemental strand, 38884241 - 38884132
Alignment:
Q  84 aggacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaat 183  Q
    |||| |||||| | |||||| |||||| || ||||||||||||| ||  | |||||| ||||||||| ||| || |||||  |||||||||| |||||||    
T  38884241 aggatccctcagtggtgtttgcttaggtctatcatttgaaataattgatcttctaatatcatacctccttgtagtaacaccttgcaacaacattttcaat 38884142  T
Q  184 catatcagtc 193  Q
    || |||||||    
T  38884141 caaatcagtc 38884132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 467
Target Start/End: Complemental strand, 51545744 - 51545278
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactcgaacaatatcagg------------------tgtaggacccctcactagt 99  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||  |||||                  || ||||||||||||  ||    
T  51545744 gaacttaggttgacttgaaccagatggaccataatttggatatggcactcgaacaacgtcaggagcaattggatgtgatggtgcaggacccctcaccggt 51545645  T
Q  100 gtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatcatatcagtccctatt 199  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51545644 gtttgcttaggcctctcatttgaaataactggacctctaatgccatacctctttgcaggaacacactgcaacaacagtttcaatcatatcagtccctatt 51545545  T
Q  200 taataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaagcactgcttca 299  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  51545544 taataaa-aaaattcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacttgtataagcactgcttca 51545446  T
Q  300 tttgcaacaccattgacatcattttgttcctgaattgcaacatttctaacactggcattttgtgcagcttgtccatcatttccaactacaacatgtccag 399  Q
    ||| ||||||||||||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||| ||||||||||||||| |||||||||||||||    
T  51545445 tttacaacaccattgacatcattttgtccctaaattgcaacatttccaacactgacattttgtgcagcctgtccatcatttccagctacaacatgtccag 51545346  T
Q  400 gattaacatttccaacattttctgtaacacctccaccatttttagcaacatgattttctgcatttcct 467  Q
    |||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||    
T  51545345 gattaacatttccaacattttctgcaacatctccaccattttcagcaacatgattttctgcatttcct 51545278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 79 - 644
Target Start/End: Complemental strand, 23172502 - 23171929
Alignment:
Q  79 ggtgtaggacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtt 178  Q
    |||| ||||||||||||| || ||| | ||||||||||||||||||||| ||  |||||||||||||||||| |||||||||||| || | |||||| ||    
T  23172502 ggtgcaggacccctcactggtttttgcgtaggcctctcatttgaaataattgaccctctaatgtcatacctccttgcaggaacaccctactacaacattt 23172403  T
Q  179 tcaatcatatcagtccctatttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcat 278  Q
    ||||||||||  |||||||  ||||||   | | | |||||||| ||||||| ||||  |||||||||||| ||||||||||||| ||| ||||| ||||    
T  23172402 tcaatcatatttgtccctaaataataat--acatttaatcaaatcagtccctaaattattacacttactagcaaatcgatccttaaaatttaacagtcat 23172305  T
Q  279 acctgtctaagcactgcttcatttgcaacaccattgacatcattttgttcctgaattgcaacatttcta------acactg----gcattttgtgcagct 368  Q
    || |||| ||||| | |||||||||||||| |||||||| |||||||| ||||||||| || |||||||      ||| |     |||||||||||| ||    
T  23172304 acatgtccaagcaatacttcatttgcaacaacattgacaacattttgtccctgaattgtaaaatttctagcaacaacatttttcagcattttgtgcaact 23172205  T
Q  369 tgtccatcatttccaactacaacatgtccaggattaacatttccaacattttctgtaacacctccaccatttttagcaacatgattttctgcatttccta 468  Q
    |||||||||||| || | |||| || |  ||||||||||||| || ||||||||| |||| ||||| |||||| | | ||| ||||||||||||||| |     
T  23172204 tgtccatcattttcagcaacaagatttataggattaacattttcagcattttctgcaacatctccagcattttcaaccacaagattttctgcatttcgtg 23172105  T
Q  469 gtacatttccaacattttatgcattctctccaacattttcttcttctggctcagtatcaatctaatattt-ggtctcctagcaacaccttggttattata 567  Q
     |||||||| | |||||||||||    |||||| ||||| ||| | |||||||||||||||| ||| ||| |||||| || |||||||||| ||  || |    
T  23172104 atacatttcgagcattttatgcaacacctccaatatttttttcat-tggctcagtatcaatccaattttttggtctcatatcaacaccttgcttcataca 23172006  T
Q  568 tcctcttaagttatgaccaatcaatccacaccttccacattgagtgtcattgtaagccctcttcatttgactcccac 644  Q
    ||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| | ||||||||||||||||||    
T  23172005 tcctcttgagttatgaccaatcaatcaacacctttcacattgagtgtcattgtaagtcttcttcatttgactcccac 23171929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 89 - 345
Target Start/End: Complemental strand, 43869635 - 43869381
Alignment:
Q  89 ccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatcatat 188  Q
    |||||| | ||||||  |||||||||||||||||||||| ||  ||||||||| |||||||| |||| ||||||| ||||||||||| |||||||||||     
T  43869635 ccctcattggtgtttgtttaggcctctcatttgaaataattgaccctctaatgccatacctccttgctggaacaccctgcaacaacattttcaatcataa 43869536  T
Q  189 cagtccctatttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaa 288  Q
    |||||| || || |||||  | | |||||||||| ||||| | ||||  |||||||||||| ||||||||||||| ||| ||||| ||||||||||| ||    
T  43869535 cagtccataattcataaa--acattcaatcaaatcagtccttaaattattacacttactagcaaatcgatccttaaaatttaacagtcatacctgtccaa 43869438  T
Q  289 gcactgcttcatttgcaacaccattgacatcattttgttcctgaattgcaacatttc 345  Q
    ||||| |||||||||||||||||||  || ||||||||  |||||||||||||||||    
T  43869437 gcactacttcatttgcaacaccattagcaacattttgtctctgaattgcaacatttc 43869381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 578 - 725
Target Start/End: Original strand, 47265464 - 47265611
Alignment:
Q  578 ttatgaccaatcaatccacaccttccacattgagtgtcattgtaagccctcttcatttgactcccaccaacaggttcctcattgccatcttttctcctgt 677  Q
    |||||| ||| |||||||||||| |||||||||||||||||||| | | ||||||| |||||||||| ||||||||||||||| ||||| ||||| |||     
T  47265464 ttatgatcaagcaatccacacctcccacattgagtgtcattgtatgtcttcttcatctgactcccacaaacaggttcctcattaccatcatttcttctgg 47265563  T
Q  678 tcttctttggtcttcctgcagcccttctcacctttggtggcacaggtt 725  Q
      |||||||||||||||| ||||||| | |||||||||||||||||||    
T  47265564 ctttctttggtcttcctggagcccttttaacctttggtggcacaggtt 47265611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 571 - 725
Target Start/End: Original strand, 33601234 - 33601384
Alignment:
Q  571 tcttaagttatgaccaatcaatccacaccttccacattgagtgtcattgtaagccctcttcatttgactcccaccaacaggttcctcattgccatctttt 670  Q
    |||| ||||||| || |||| |||||| |||||||||||||||||||| || |   |||||||   ||||||||||| |||||| ||||||||||| |||    
T  33601234 tcttgagttatgtcccatcagtccacatcttccacattgagtgtcattataggttttcttcatgctactcccaccaataggttcttcattgccatccttt 33601333  T
Q  671 ctcctgttcttctttggtcttcctgcagcccttctcacctttggtggcacaggtt 725  Q
    |||||     |||| ||||||||||| | |  | |||||||||||||||||||||    
T  33601334 ctcct----ctcttaggtcttcctgctgacaatttcacctttggtggcacaggtt 33601384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 43869721 - 43869672
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactc 67  Q
    ||||||||||||| |||||| | ||| |||||||||||||||||| ||||    
T  43869721 gaacttaggttgagttgaacagaatggaccataatttggatatggtactc 43869672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 86 - 714
Target Start/End: Complemental strand, 23965425 - 23964798
Alignment:
Q  86 gacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatca 185  Q
    ||||||||| | |||||| |||||||||||||||||||||||  || ||||||||| |||||||| |||||||||||  || |||||| ||||| |||||    
T  23965425 gacccctcaatggtgtttgcttaggcctctcatttgaaataataggccctctaatgccatacctccttgcaggaacaaccttcaacaagagtttaaatca 23965326  T
Q  186 tatcagtccctatttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtc 285  Q
    ||| |||||||   | |||||  | | |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||     
T  23965325 tattagtccctgacttataaa--acattcaatcaaattagtccttgaatttctacacttactagtaaatcgatccttagaatttaacagtcatacctgtg 23965228  T
Q  286 taagcactgcttcatttgcaacaccattgacatcattttgttcctgaattg---------------caacatttctaacactggcattttgtgcagcttg 370  Q
    |||||||||||||| ||||||||||||||||| |||||||| | |||||||               ||||||||  |||| || ||||||||||| ||||    
T  23965227 taagcactgcttcaattgcaacaccattgacagcattttgtccatgaattgcatcatttccagcaacaacattttcaacattgacattttgtgcaacttg 23965128  T
Q  371 tccatcatttccaactacaacatgtccaggattaacatttccaacattttctgtaacacctccaccatttttagcaacatgattttctgcatttcctagt 470  Q
    |  |||||||||| ||||||||| |||||               ||||||||| ||||||||||||||||| |||||||||||||||||||||  || ||    
T  23965127 ttgatcatttccagctacaacatttccag---------------cattttctgcaacacctccaccattttcagcaacatgattttctgcattgactggt 23965043  T
Q  471 acatttccaacattttatgcattctctccaacattttcttcttctggctcagtatcaatcta-atatttggtctcctagcaacaccttggttattatatc 569  Q
    |||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||| | |  |||||||||||| |||||| ||| |||||| |||    
T  23965042 acatttccaacattttctgcattcccttcaacattttcttcttctggctcagtatcaatccagacttttggtctcctaccaacacattgcttattacatc 23964943  T
Q  570 ctcttaagttatgaccaatcaatccacaccttccacattgagtgtcattgtaagccctcttcatttgactcccaccaacaggttcctcattgccatcttt 669  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||    
T  23964942 ctcttaagttatgaccaatcaatccacaccttccacattgagtgtcattgtaagtcctctttatttgactcccaccaacaggttcttcattgccatcttt 23964843  T
Q  670 tctcctgttcttctttggtcttcctgcagcccttctcacctttgg 714  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||    
T  23964842 tctcctgttcttctttggtcttcctacagaccttctcacctttgg 23964798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 99 - 345
Target Start/End: Complemental strand, 31914396 - 31914152
Alignment:
Q  99 tgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatcatatcagtccctat 198  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||| |||    
T  31914396 tgtttgcttaggcctctcatttgaaataattggtcctctaatgccatacctccttgcaggaacaccctgcaacaacagtttcaatcatatcagtccatat 31914297  T
Q  199 ttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaagcactgcttc 298  Q
    ||||||||  | | |||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||    
T  31914296 ttaataaa--atattcaatcaaattagtccttgaatttttacacttactagaaaatcgatccttagaatttaacaatcatacatgtctaagcactgcttc 31914199  T
Q  299 atttgcaacaccattgacatcattttgttcctgaattgcaacatttc 345  Q
    ||||| ||||||||||||| |||||||| ||||||||||||||||||    
T  31914198 atttgtaacaccattgacaacattttgtccctgaattgcaacatttc 31914152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 79 - 345
Target Start/End: Original strand, 46867031 - 46867297
Alignment:
Q  79 ggtgtaggacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtt 178  Q
    |||||||||||||||| | ||||||  || ||| ||||||||||||||| ||| |||||||||||||||||| ||||| |||||| ||||||||||| ||    
T  46867031 ggtgtaggacccctcattggtgtttgttttggcttctcatttgaaataattggccctctaatgtcatacctccttgcaagaacaccctgcaacaacattt 46867130  T
Q  179 tcaatc--atatcagtccctatttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattc 276  Q
    ||||||  ||||||||||||| || ||||  || | | |||||||| ||||||| ||||  |||||||||||| |||| |||||||| ||| ||| | ||    
T  46867131 tcaatcatatatcagtccctaattcataa--aacattaaatcaaatgagtccctaaattattacacttactagcaaattgatccttaaaatttaatagtc 46867228  T
Q  277 atacctgtctaagcactgcttcatttgcaacaccattgacatcattttgttcctgaattgcaacatttc 345  Q
    |||  |||| ||||||| |||||||||||||||||||  || |||||||| ||||||||||||||||||    
T  46867229 atatttgtccaagcactacttcatttgcaacaccatttgcaacattttgtccctgaattgcaacatttc 46867297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 89 - 345
Target Start/End: Complemental strand, 6057798 - 6057544
Alignment:
Q  89 ccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatcatat 188  Q
    |||||| | ||||||  |||||||||||||||||||||| ||| ||||||||| |||||||| |||| ||||||| ||||||||||| ||||||||||||    
T  6057798 ccctcattggtgtttgtttaggcctctcatttgaaataattggccctctaatgccatacctccttgctggaacaccctgcaacaacattttcaatcatat 6057699  T
Q  189 cagtccctatttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaa 288  Q
    || ||| || || |||||  | | | |||||||| ||||| | ||||  ||||||||||||  |||||||||||| ||| ||||| ||||||||||| ||    
T  6057698 caatccttaattcataaa--acatttaatcaaatcagtccttaaattattacacttactagctaatcgatccttaaaatttaacagtcatacctgtccaa 6057601  T
Q  289 gcactgcttcatttgcaacaccattgacatcattttgttcctgaattgcaacatttc 345  Q
    | ||| ||||||||| |||||||||| || |||||||| ||||||||||||||||||    
T  6057600 gtactacttcatttgtaacaccattggcaacattttgtccctgaattgcaacatttc 6057544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 79 - 345
Target Start/End: Complemental strand, 17199945 - 17199678
Alignment:
Q  79 ggtgtaggacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtt 178  Q
    |||||||||||||||| | ||||||  |||  ||||||||||||||||| ||| ||||||||| |||||||| |||||||||||| ||||||||||| ||    
T  17199945 ggtgtaggacccctcattggtgtttgtttatacctctcatttgaaataattggccctctaatgacatacctccttgcaggaacaccctgcaacaacattt 17199846  T
Q  179 tcaatcatat----cagtccctatttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacat 274  Q
    ||||||||||    |||||| || || |||||  | | |||| ||||| ||||| | ||||  ||| |||||||| ||||||||||||| ||| |||||     
T  17199845 tcaatcatatatatcagtccttaattcataaa--acattcaa-caaatcagtccttaaattattactcttactagcaaatcgatccttaaaatttaacag 17199749  T
Q  275 tcatacctgtctaagcactgcttcatttgcaacaccattgacatcattttgttcctgaattgcaacatttc 345  Q
    |||||| |||| ||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||    
T  17199748 tcatacatgtccaagcactacttcatttgcaacaccattggcaacattttgtccctgaattgcaacatttc 17199678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 79 - 345
Target Start/End: Original strand, 25972439 - 25972706
Alignment:
Q  79 ggtgtaggacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtt 178  Q
    ||||| |||||||||| | ||||||  ||||||||||||||| ||| || ||| | ||||||| |||||||| |||||||||||| ||||||||||| ||    
T  25972439 ggtgtgggacccctcattggtgtttgtttaggcctctcatttaaaaaaattggccatctaatgccatacctccttgcaggaacaccctgcaacaacattt 25972538  T
Q  179 tcaatcatat----cagtccctatttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacat 274  Q
    ||||||||||    ||||||||| || |||||  | | |||||||||| ||||||| ||||  |||||||||||| |||| |||| ||| ||| |||||     
T  25972539 tcaatcatatatatcagtccctaattcataaa--acattcaatcaaatcagtccctaaattattacacttactagcaaattgatcattaaaatgtaacag 25972636  T
Q  275 tcatacctgtctaagcactgcttcatttgcaacaccattgacatcattttgttcctgaattgcaacatttc 345  Q
    |||||| |||| ||||||| |||||||||||||||||||| || |||||||| ||||||||||||| ||||    
T  25972637 tcatac-tgtccaagcactacttcatttgcaacaccattggcaacattttgtccctgaattgcaacgtttc 25972706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 536 - 725
Target Start/End: Complemental strand, 66466 - 66277
Alignment:
Q  536 tttggtctcctagcaacaccttggttattatatcctcttaagttatgaccaatcaatccacaccttccacattgagtgtcattgtaagccctcttcattt 635  Q
    |||||||||||||| |||||||| ||   | | | |||| ||||||| || |||| |||||| |||||||||||| ||||||| || |   |||||||      
T  66466 tttggtctcctagccacaccttgctttgcacaacttcttgagttatgtcccatcagtccacatcttccacattgaatgtcattatatgttttcttcatgc 66367  T
Q  636 gactcccaccaacaggttcctcattgccatcttttctcctgttcttctttggtcttcctgcagcccttctcacctttggtggcacaggtt 725  Q
     ||||||||||| |||||| ||||| ||||| |||||||| || ||||| ||||||||||| | |||| |||||||||||||||||||||    
T  66366 tactcccaccaataggttcttcattaccatcctttctcctatttttcttaggtcttcctgctgaccttttcacctttggtggcacaggtt 66277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 31914495 - 31914440
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactcgaacaa 73  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31914495 gaacttaggttgacttgaaccggatggaccataatttggatatggcactcgaacaa 31914440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 618 - 704
Target Start/End: Complemental strand, 12902946 - 12902860
Alignment:
Q  618 tgtaagccctcttcatttgactcccaccaacaggttcctcattgccatcttttctcctgttcttctttggtcttcctgcagcccttc 704  Q
    |||||| | ||||||| | |||||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||||    
T  12902946 tgtaagtcttcttcatgttactcccacaaacaggttcctcaatgccatcctttctcatgttcttctttggtcttcctgcaacccttc 12902860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 48456877 - 48456807
Alignment:
Q  79 ggtgtaggacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacct 149  Q
    |||||| ||||| ||| |||||||| |||||||||||||| |||||||| |||  ||||||||||||||||    
T  48456877 ggtgtatgacccttcattagtgtttgcttaggcctctcatatgaaataattggttctctaatgtcatacct 48456807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 31914127 - 31914074
Alignment:
Q  355 cattttgtgcagcttgtccatcatttccaactacaacatgtccaggattaacat 408  Q
    ||||||||||| |||||||||||||| || ||||||||| ||||||||||||||    
T  31914127 cattttgtgcaacttgtccatcattttcagctacaacatttccaggattaacat 31914074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 23965511 - 23965459
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactcgaa 70  Q
    |||||||||||||||||||  ||||| |||||||| |||||||||||||||||    
T  23965511 gaacttaggttgacttgaattggatggaccataatctggatatggcactcgaa 23965459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 48456749 - 48456665
Alignment:
Q  241 acttactagaaaatcgatccttagaatctaacattcatacctgtctaagcactgcttcatttgcaacaccattgacatcattttg 325  Q
    ||||||||  || |||||||||| ||| ||| | |||||| |||| ||| ||| |||||||||||||| ||||||||||||||||    
T  48456749 acttactaacaattcgatccttaaaatttaagagtcatacatgtccaagaactacttcatttgcaacaacattgacatcattttg 48456665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 12903224 - 12903147
Alignment:
Q  238 tacacttactagaaaatcgatccttagaatctaacattcatacctgtctaagcactgcttcatttgcaacaccattga 315  Q
    ||||||||||||||||||||| |||| | | ||  | ||||||||||||| | ||||| |||||||||||| ||||||    
T  12903224 tacacttactagaaaatcgattcttatattttatgagtcatacctgtctaggaactgcctcatttgcaacaacattga 12903147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 25972360 - 25972409
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactc 67  Q
    ||||||||||||| ||||||| |||| |||||||||||||||||| ||||    
T  25972360 gaacttaggttgagttgaaccagatgaaccataatttggatatggtactc 25972409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 436 - 509
Target Start/End: Original strand, 25972761 - 25972834
Alignment:
Q  436 catttttagcaacatgattttctgcatttcctagtacatttccaacattttatgcattctctccaacattttct 509  Q
    |||||| ||||||| |||||| ||||||||||  ||||||||||||||||| ||||    ||||||||||||||    
T  25972761 cattttcagcaacaagattttttgcatttcctgatacatttccaacattttctgcaacacctccaacattttct 25972834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 6057883 - 6057835
Alignment:
Q  19 aacttaggttgacttgaaccggatgtaccataatttggatatggcactc 67  Q
    |||||||||||| ||||||||| || |||||||||||||||||| ||||    
T  6057883 aacttaggttgagttgaaccgggtggaccataatttggatatggtactc 6057835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 32839911 - 32839868
Alignment:
Q  84 aggacccctcactagtgtttacttaggcctctcatttgaaataa 127  Q
    |||||||||||||||||||| ||||| ||||||| |||||||||    
T  32839911 aggacccctcactagtgttttcttagacctctcagttgaaataa 32839868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 17200023 - 17199974
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactc 67  Q
    ||||||||||||| ||||||  |||| |||||||||||||||||| ||||    
T  17200023 gaacttaggttgagttgaactagatggaccataatttggatatggtactc 17199974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 35267 - 35573
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactcgaacaatatcaggtgtaggacccctcactagtgtttacttaggcctctca 117  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||| ||||||||||| | |||||| |||||||||||||    
T  35267 gaacttaggttgacttgaaccggatagaccataatttggatatggcactcgaacaatgtcaggtgcaggacccctcattggtgtttgcttaggcctctca 35366  T
Q  118 tttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatcatatcagtccctatttaataaataaaaatcaat 217  Q
    |||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||  |||  |||||    
T  35367 tttgaaataactggacctttaatgtcatatctctttgcaggaacatactgcaacaacagtttcaatcatattagtccctatttaataa--aaatttcaat 35464  T
Q  218 caaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaagcactgcttcatttgcaacaccattgaca 317  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35465 caaattagtccctgaatttctacactaactagaaaatcgatccttagaatctaacattcatacctgtctaagcactgcttcatttgcaacaccattgaca 35564  T
Q  318 tcattttgt 326  Q
    |||||||||    
T  35565 tcattttgt 35573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 176; Significance: 2e-94; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 28988 - 29318
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactcgaa-ca-----atatca-ggtgtaggacccctcactagtgtttacttagg 110  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||     || | | |||| ||||||| ||||| |||||| |||||     
T  28988 gaacttaggttgacttgaaccggatggaccataatttggatatggcacttgaagcagttggatgtgatggtgcaggacccttcactggtgtttgcttagt 29087  T
Q  111 cctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatcatatcagtccctatttaataaataaa 210  Q
    | ||||||||||||||| ||| |||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||| |||||||||||  |     
T  29088 c-tctcatttgaaataattggccctctaatgtcatacctccttgcaggaacaccctgcaacaagagtttcaatcatatcagtcc-tatttaataaa--ac 29183  T
Q  211 aatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaagcactgcttcatttgcaacacc 310  Q
    | |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||    
T  29184 attcaatcaaattagtccttgaatttctacacttactagaaaatcaatccttagaatttaacagtcatacctgtgtaagcactgcttcatttgcaacacc 29283  T
Q  311 attgacatcattttgttcctgaattgcaacatttc 345  Q
    |||||||||||||||| | ||||||||| ||||||    
T  29284 attgacatcattttgtccatgaattgcatcatttc 29318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 406 - 601
Target Start/End: Original strand, 29364 - 29561
Alignment:
Q  406 catttccaacattttctgtaacacctccaccatttttagcaacatgattttctgcatttcctagtacatttccaaca-ttttatgcattctctccaacat 504  Q
    |||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| |||||||||| ||||||    
T  29364 catttccagcattttctgcaacacctccaccattttcagcaacatgattttctgcatttcctggtacatttccaacatttttctgcattctcttcaacat 29463  T
Q  505 tttcttcttctggctcagtatcaatctaat-atttggtctcctagcaacaccttggttattatatcctcttaagttatgaccaatcaatccacacctt 601  Q
    |||||||||||||||||||||||||||| |  ||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||    
T  29464 tttcttcttctggctcagtatcaatctagtcctttggtctcctagcaacaccttgcttattacatcctcttaagttatgacaaatcaatccacacctt 29561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 160; Significance: 7e-85; HSPs: 3)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 99 - 345
Target Start/End: Complemental strand, 5385 - 5141
Alignment:
Q  99 tgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatcatatcagtccctat 198  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  5385 tgtttgcttaggcctctcatttgaaataattggtcctctaatgccatacctccttgcaggaacaccctgtaacaacagtttcaatcatatcagtccctat 5286  T
Q  199 ttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaagcactgcttc 298  Q
    ||||||||  | | |||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| || ||| ||||||| |||||||||    
T  5285 ttaataaa--acattcaatcaaattagtccctgaatttttacacttagtagaaaatcgatccttagaatttaacaatcctacatgtctaaacactgcttc 5188  T
Q  299 atttgcaacaccattgacatcattttgttcctgaattgcaacatttc 345  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||||||    
T  5187 atttgcaacaccattgacaacattttgtccctaaattgcaacatttc 5141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 5484 - 5428
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactcgaacaat 74  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  5484 gaacttaggttgacttgaaccggatggaccataatttggatatgacactcgaacaat 5428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 5116 - 5063
Alignment:
Q  355 cattttgtgcagcttgtccatcatttccaactacaacatgtccaggattaacat 408  Q
    ||||||||||| |||||||||||||| || |||  |||| ||||||||||||||    
T  5116 cattttgtgcaacttgtccatcattttcagctaatacatttccaggattaacat 5063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 8e-63; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 89 - 350
Target Start/End: Complemental strand, 5126768 - 5126509
Alignment:
Q  89 ccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatcatat 188  Q
    |||||| | ||||||  |||||||||||||||||||||| ||| ||||||||| |||||||| |||  ||||||| ||||||||||| ||||||||||||    
T  5126768 ccctcattggtgtttgtttaggcctctcatttgaaataattggccctctaatgccatacctccttggtggaacaccctgcaacaacattttcaatcatat 5126669  T
Q  189 cagtccctatttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaa 288  Q
    ||||||||| || |||||  | | |||||||||| ||||| | ||||  |||||||||||| ||||||||||||| ||| ||||| ||||||||||| ||    
T  5126668 cagtccctaattcataaa--acattcaatcaaatcagtccttaaattattacacttactagcaaatcgatccttaaaatttaacagtcatacctgtccaa 5126571  T
Q  289 gcactgcttcatttgcaacaccattgacatcattttgttcctgaattgcaacatttctaaca 350  Q
    ||||| ||||||||||||||||||| ||| ||||||||  ||||||||||||||||| ||||    
T  5126570 gcactacttcatttgcaacaccattaacaacattttgtctctgaattgcaacatttccaaca 5126509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 89 - 344
Target Start/End: Complemental strand, 5134023 - 5133770
Alignment:
Q  89 ccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatcatat 188  Q
    |||||| | ||||||  |||||||||||||||||||||| ||| ||||||||| |||||||| |||| ||||||| ||||||||||| ||||||||||||    
T  5134023 ccctcattggtgtttgtttaggcctctcatttgaaataattggccctctaatgccatacctccttgctggaacaccctgcaacaacattttcaatcatat 5133924  T
Q  189 cagtccctatttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaa 288  Q
    ||||||||| || ||||  || | |||||||||| ||||| | ||||  |||||||||||| ||||||||||||| ||| ||||| |||||| |||| ||    
T  5133923 cagtccctaattcataa--aacattcaatcaaatcagtccttaaattattacacttactagcaaatcgatccttaaaatttaacagtcatacttgtccaa 5133826  T
Q  289 gcactgcttcatttgcaacaccattgacatcattttgttcctgaattgcaacattt 344  Q
    ||||| |||||||||||||||||||  || ||||||||  ||||||||||||||||    
T  5133825 gcactacttcatttgcaacaccattagcaacattttgtctctgaattgcaacattt 5133770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 79 - 350
Target Start/End: Complemental strand, 54093527 - 54093258
Alignment:
Q  79 ggtgtaggacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtt 178  Q
    |||| |||||||||||||  ||||| ||||||||||||||||||||||| | | | |||||||||||||||| |||||||||||| |||||| |||| ||    
T  54093527 ggtgcaggacccctcactgatgtttgcttaggcctctcatttgaaataatttgccgtctaatgtcatacctccttgcaggaacaccctgcaataacattt 54093428  T
Q  179 tcaatcatatcagtccctatttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcat 278  Q
    |||||||||||||||||||  | ||||  || | |||||||||| ||||||| ||||    |||| ||||  | |||||||||||  || ||||| ||||    
T  54093427 tcaatcatatcagtccctaaatcataa--aacattcaatcaaataagtccctaaattatatcactaactatcagatcgatccttaagatttaacagtcat 54093330  T
Q  279 acctgtctaagcactgcttcatttgcaacaccattgacatcattttgttcctgaattgcaacatttctaaca 350  Q
    ||||||  | ||||| |||||||||||||| |||||| ||||||||||  ||||||||||||||||| ||||    
T  54093329 acctgttcaggcactacttcatttgcaacaacattgagatcattttgtctctgaattgcaacatttccaaca 54093258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 106 - 345
Target Start/End: Complemental strand, 41624663 - 41624426
Alignment:
Q  106 ttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaatcatatcagtccctatttaataa 205  Q
    |||| ||||||||||||||||| ||| |||||||| ||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||| || ||||    
T  41624663 ttagacctctcatttgaaataattggccctctaatatcatacctccttgcaggaacaccctgcaacaacaatttcaatcatatcagtccctaattcataa 41624564  T
Q  206 ataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctgtctaagcactgcttcatttgca 305  Q
      || | |||||||||| || |||| ||||  |||| || || | |||| |||||||| ||| ||||| |||||| |||| || || | |||| ||||||    
T  41624563 --aacattcaatcaaatcagcccctaaattattacatttgcttgcaaattgatccttaaaatttaacagtcatacatgtccaaacattacttcttttgca 41624466  T
Q  306 acaccattgacatcattttgttcctgaattgcaacatttc 345  Q
    |||||||||||| |||||||| | ||||||||||||||||    
T  41624465 acaccattgacaacattttgtccttgaattgcaacatttc 41624426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 578 - 725
Target Start/End: Original strand, 41016975 - 41017122
Alignment:
Q  578 ttatgaccaatcaatccacaccttccacattgagtgtcattgtaagccctcttcatttgactcccaccaacaggttcctcattgccatcttttctcctgt 677  Q
    |||||||||| ||||||||||||||||||||||||||||||||| | | ||||||| |||||||||| ||||||||||||||| ||||| ||||| |||     
T  41016975 ttatgaccaagcaatccacaccttccacattgagtgtcattgtatgtcttcttcatctgactcccacaaacaggttcctcattaccatcctttcttctgg 41017074  T
Q  678 tcttctttggtcttcctgcagcccttctcacctttggtggcacaggtt 725  Q
      |||||||||||||||| ||||||| | |||||||||||||||||||    
T  41017075 ctttctttggtcttcctggagcccttttaacctttggtggcacaggtt 41017122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 79 - 325
Target Start/End: Original strand, 7589964 - 7590208
Alignment:
Q  79 ggtgtaggacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtt 178  Q
    |||| ||||||||||| | ||||||  ||| ||||||||||||||| || ||| ||||||||||||||||||||||  | ||||| ||||||||||| ||    
T  7589964 ggtgcaggacccctcattggtgtttgtttatgcctctcatttgaaacaattggtcctctaatgtcatacctctttgtggtaacaccctgcaacaacattt 7590063  T
Q  179 tcaatcatatcagtccctatttaataaata-aaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattca 277  Q
    ||||||| |||||||||||   ||| | || ||| |||||||||| ||||||| ||||  |||||||||||| ||||||||||||| | | ||| | |||    
T  7590064 tcaatcaaatcagtcccta---aattattacaaattcaatcaaatcagtccctaaattattacacttactagcaaatcgatccttaaactttaagagtca 7590160  T
Q  278 tacctgtctaagcactgcttcatttgcaacaccattgacatcattttg 325  Q
     || |||| | ||||| ||||||||| |||| |||||||| |||||||    
T  7590161 gacatgtccatgcactacttcatttgaaacaacattgacaacattttg 7590208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 5126854 - 5126811
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatg 61  Q
    ||||||||||||| |||||||||||| |||||||||||||||||    
T  5126854 gaacttaggttgagttgaaccggatggaccataatttggatatg 5126811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 5134109 - 5134060
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactc 67  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||| ||||    
T  5134109 gaacttaggttgagttgaactggatggaccataatttggatatggtactc 5134060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 41624769 - 41624720
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatggcactc 67  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||| ||||    
T  41624769 gaacttaggttgagttgaactggatggaccataatttggatatggtactc 41624720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 54093606 - 54093562
Alignment:
Q  18 gaacttaggttgacttgaaccggatgtaccataatttggatatgg 62  Q
    |||||||| |||| |||||||||||| ||||||||||||||||||    
T  54093606 gaacttagattgagttgaaccggatgaaccataatttggatatgg 54093562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 325
Target Start/End: Complemental strand, 17238540 - 17238473
Alignment:
Q  258 tccttagaatctaacattcatacctgtctaagcactgcttcatttgcaacaccattgacatcattttg 325  Q
    |||||| ||| ||| | ||||||||||| | ||||| |||||||||||||| |||||||| |||||||    
T  17238540 tccttaaaatttaagagtcatacctgtccaggcactacttcatttgcaacaacattgacaacattttg 17238473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 84 - 313
Target Start/End: Original strand, 15458096 - 15458322
Alignment:
Q  84 aggacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttgcaggaacacactgcaacaacagtttcaat 183  Q
    ||||||||||||| ||| || ||||||| ||||||||||||||| ||| ||||||||||| |||||| ||| || ||||| ||||||  ||| |||||||    
T  15458096 aggacccctcactggtgcttgcttaggc-tctcatttgaaataattggtcctctaatgtcgtacctccttgtagtaacaccctgcaattacattttcaat 15458194  T
Q  184 catatcagtccctatttaataaataaaaatcaatcaaattagtccctgaatttctacacttactagaaaatcgatccttagaatctaacattcatacctg 283  Q
    || |||||||||||  | ||||   | | |||||||||| ||||| | | ||  |||||||||||| || |||||||||| ||| ||| | |||||| ||    
T  15458195 caaatcagtccctaaattataa--catattcaatcaaatcagtccgtaatttgttacacttactagcaactcgatccttaaaatttaagagtcatacttg 15458292  T
Q  284 tctaagcactgcttcatttgcaacaccatt 313  Q
    || | | ||| |||||||||||||| ||||    
T  15458293 tccaggaactacttcatttgcaacaacatt 15458322  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 27076254 - 27076184
Alignment:
Q  84 aggacccctcactagtgtttacttaggcctctcatttgaaataactggacctctaatgtcatacctctttg 154  Q
    |||||||||||||||||||| | ||| | ||||| ||||||||||| | ||||| ||| ||||||||||||    
T  27076254 aggacccctcactagtgtttgcgtagacttctcaattgaaataactagtcctctcatgccatacctctttg 27076184  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 25510242 - 25510285
Alignment:
Q  84 aggacccctcactagtgtttacttaggcctctcatttgaaataa 127  Q
    ||||||||||||| |||||| |||||||||| ||||||||||||    
T  25510242 aggacccctcactggtgttttcttaggcctcacatttgaaataa 25510285  T

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Target: scaffold0146 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 325
Target Start/End: Original strand, 15659 - 15726
Alignment:
Q  258 tccttagaatctaacattcatacctgtctaagcactgcttcatttgcaacaccattgacatcattttg 325  Q
    |||||| ||| ||| | ||||||||||| | ||||| |||||||||||||| |||||||| |||||||    
T  15659 tccttaaaatttaagagtcatacctgtccaggcactacttcatttgcaacaacattgacaacattttg 15726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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