View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12382_high_5 (Length: 428)

Name: NF12382_high_5
Description: NF12382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12382_high_5
NF12382_high_5
[»] chr4 (21 HSPs)
chr4 (274-412)||(17892294-17892432)
chr4 (297-412)||(24793665-24793780)
chr4 (305-412)||(36943746-36943853)
chr4 (305-408)||(31946164-31946267)
chr4 (291-408)||(36511871-36511989)
chr4 (281-412)||(754224-754354)
chr4 (236-371)||(19738704-19738840)
chr4 (296-408)||(40694138-40694250)
chr4 (236-371)||(52122844-52122980)
chr4 (293-371)||(55901114-55901192)
chr4 (236-330)||(1176988-1177083)
chr4 (297-371)||(21637734-21637808)
chr4 (350-406)||(726496-726552)
chr4 (295-412)||(3109239-3109356)
chr4 (294-371)||(39957630-39957707)
chr4 (236-342)||(5834837-5834944)
chr4 (236-371)||(8064084-8064220)
chr4 (241-342)||(52721276-52721378)
chr4 (274-368)||(5325699-5325793)
chr4 (296-406)||(46431873-46431983)
chr4 (274-371)||(53322383-53322480)
[»] chr7 (28 HSPs)
chr7 (37-137)||(24929317-24929420)
chr7 (241-408)||(24956260-24956428)
chr7 (273-412)||(21409433-21409571)
chr7 (261-412)||(33454100-33454251)
chr7 (243-408)||(40041390-40041555)
chr7 (351-413)||(1400201-1400263)
chr7 (236-405)||(44960076-44960246)
chr7 (177-223)||(24929465-24929511)
chr7 (272-411)||(44269767-44269905)
chr7 (306-406)||(21179911-21180011)
chr7 (236-399)||(35159869-35160033)
chr7 (285-408)||(23970064-23970187)
chr7 (246-342)||(23311736-23311833)
chr7 (274-342)||(18113943-18114011)
chr7 (274-342)||(26773716-26773784)
chr7 (258-371)||(48163435-48163548)
chr7 (236-371)||(11829693-11829829)
chr7 (236-371)||(27353925-27354061)
chr7 (306-408)||(554828-554930)
chr7 (296-341)||(26973118-26973163)
chr7 (294-342)||(19820868-19820916)
chr7 (236-342)||(25969401-25969508)
chr7 (236-371)||(40095654-40095790)
chr7 (241-342)||(9250426-9250528)
chr7 (241-342)||(34122621-34122723)
chr7 (281-339)||(38064645-38064703)
chr7 (285-371)||(38263053-38263139)
chr7 (376-412)||(15878358-15878394)
[»] chr5 (28 HSPs)
chr5 (241-408)||(26716285-26716453)
chr5 (241-408)||(26986025-26986193)
chr5 (311-412)||(27938242-27938343)
chr5 (236-408)||(17138192-17138364)
chr5 (236-373)||(30284580-30284718)
chr5 (275-408)||(5612380-5612513)
chr5 (261-413)||(1795425-1795578)
chr5 (236-371)||(32707806-32707942)
chr5 (261-371)||(5722020-5722130)
chr5 (236-408)||(26691623-26691796)
chr5 (236-408)||(26961355-26961528)
chr5 (296-380)||(34032437-34032521)
chr5 (241-371)||(41392687-41392818)
chr5 (274-408)||(43357697-43357831)
chr5 (297-406)||(18001905-18002014)
chr5 (236-342)||(1639786-1639893)
chr5 (236-371)||(39690738-39690874)
chr5 (274-342)||(11906264-11906332)
chr5 (274-342)||(12190431-12190499)
chr5 (241-336)||(42366113-42366209)
chr5 (353-408)||(11694328-11694383)
chr5 (353-408)||(25749731-25749786)
chr5 (296-342)||(19321441-19321487)
chr5 (273-342)||(19102469-19102538)
chr5 (285-371)||(32624934-32625020)
chr5 (274-342)||(3701244-3701312)
chr5 (296-373)||(7629127-7629203)
chr5 (274-342)||(30777526-30777594)
[»] chr3 (33 HSPs)
chr3 (294-413)||(47642072-47642191)
chr3 (274-411)||(28968556-28968694)
chr3 (236-408)||(45347306-45347478)
chr3 (275-408)||(21157667-21157800)
chr3 (296-406)||(22289661-22289771)
chr3 (286-409)||(7899655-7899779)
chr3 (274-406)||(13748388-13748519)
chr3 (296-408)||(19421484-19421596)
chr3 (296-408)||(55268954-55269066)
chr3 (274-408)||(41742010-41742144)
chr3 (296-408)||(6134320-6134432)
chr3 (305-408)||(19879041-19879144)
chr3 (274-369)||(42229720-42229815)
chr3 (350-398)||(48334076-48334124)
chr3 (299-406)||(30787501-30787609)
chr3 (236-342)||(35389757-35389864)
chr3 (236-371)||(40497337-40497473)
chr3 (258-369)||(1679675-1679786)
chr3 (274-408)||(25700806-25700941)
chr3 (281-342)||(983247-983308)
chr3 (236-369)||(7327719-7327853)
chr3 (296-398)||(48333079-48333181)
chr3 (285-369)||(45532957-45533041)
chr3 (236-342)||(52121187-52121294)
chr3 (296-342)||(3983765-3983811)
chr3 (241-342)||(30226432-30226534)
chr3 (354-408)||(39664082-39664136)
chr3 (274-369)||(42464884-42464979)
chr3 (351-408)||(38889024-38889081)
chr3 (236-369)||(48122832-48122966)
chr3 (258-371)||(28704757-28704870)
chr3 (258-371)||(37996786-37996899)
chr3 (274-371)||(52505808-52505905)
[»] chr2 (22 HSPs)
chr2 (236-416)||(35342324-35342506)
chr2 (274-406)||(4561834-4561967)
chr2 (285-405)||(34146237-34146357)
chr2 (296-408)||(3563908-3564020)
chr2 (296-408)||(2319343-2319455)
chr2 (236-371)||(33324825-33324961)
chr2 (236-381)||(38602287-38602433)
chr2 (296-408)||(44156665-44156778)
chr2 (274-372)||(8482891-8482989)
chr2 (261-341)||(28746657-28746737)
chr2 (236-371)||(7876721-7876857)
chr2 (236-371)||(40308872-40309008)
chr2 (296-406)||(3545520-3545631)
chr2 (306-408)||(14824216-14824319)
chr2 (285-412)||(21104539-21104666)
chr2 (296-411)||(31236121-31236236)
chr2 (295-408)||(1005579-1005692)
chr2 (241-342)||(37134302-37134404)
chr2 (236-369)||(4170479-4170613)
chr2 (236-369)||(22484274-22484408)
chr2 (352-408)||(14217088-14217144)
chr2 (305-342)||(1776440-1776477)
[»] chr8 (27 HSPs)
chr8 (236-412)||(32424928-32425105)
chr8 (242-369)||(4245953-4246081)
chr8 (274-405)||(37372305-37372437)
chr8 (272-411)||(20182418-20182556)
chr8 (296-406)||(27886258-27886368)
chr8 (296-406)||(27944916-27945026)
chr8 (274-412)||(38388713-38388851)
chr8 (236-371)||(16384624-16384760)
chr8 (241-371)||(32759385-32759516)
chr8 (236-369)||(36483442-36483576)
chr8 (272-406)||(27968147-27968283)
chr8 (272-406)||(28025133-28025269)
chr8 (236-371)||(12580528-12580664)
chr8 (274-369)||(5818288-5818383)
chr8 (236-380)||(32877444-32877589)
chr8 (236-342)||(2872914-2873021)
chr8 (353-408)||(3892089-3892144)
chr8 (236-342)||(6028494-6028601)
chr8 (352-411)||(7411726-7411785)
chr8 (236-342)||(13422215-13422322)
chr8 (236-371)||(22201312-22201448)
chr8 (236-342)||(28876570-28876677)
chr8 (236-371)||(34901357-34901493)
chr8 (351-384)||(32792-32825)
chr8 (305-342)||(24100197-24100234)
chr8 (282-342)||(10349298-10349358)
chr8 (281-341)||(23265702-23265762)
[»] chr1 (31 HSPs)
chr1 (274-406)||(48715165-48715297)
chr1 (294-412)||(38218449-38218567)
chr1 (236-371)||(1043234-1043370)
chr1 (328-412)||(24590058-24590142)
chr1 (285-412)||(41675923-41676050)
chr1 (236-341)||(43189662-43189768)
chr1 (261-408)||(9781675-9781822)
chr1 (241-371)||(1036471-1036602)
chr1 (241-342)||(14167096-14167198)
chr1 (236-369)||(20409531-20409665)
chr1 (274-342)||(30323761-30323829)
chr1 (258-342)||(38948762-38948846)
chr1 (236-371)||(28949216-28949352)
chr1 (285-342)||(2364734-2364791)
chr1 (236-369)||(32381036-32381170)
chr1 (281-342)||(34432387-34432448)
chr1 (286-342)||(40776053-40776109)
chr1 (236-371)||(6916849-6916985)
chr1 (351-414)||(9528775-9528838)
chr1 (286-341)||(10763717-10763772)
chr1 (236-371)||(37104127-37104263)
chr1 (236-342)||(37346852-37346959)
chr1 (236-371)||(38330434-38330570)
chr1 (236-371)||(52895688-52895824)
chr1 (236-341)||(3708284-3708390)
chr1 (319-406)||(24851565-24851652)
chr1 (236-369)||(8132190-8132324)
chr1 (281-342)||(13012996-13013057)
chr1 (285-342)||(31653406-31653463)
chr1 (290-334)||(29861863-29861907)
chr1 (350-406)||(33039734-33039790)
[»] scaffold0640 (1 HSPs)
scaffold0640 (236-371)||(8067-8203)
[»] chr6 (14 HSPs)
chr6 (292-408)||(19128217-19128333)
chr6 (306-411)||(11105364-11105469)
chr6 (305-399)||(7254997-7255092)
chr6 (241-371)||(8356970-8357101)
chr6 (274-373)||(26327201-26327299)
chr6 (294-406)||(31079667-31079780)
chr6 (274-341)||(234352-234419)
chr6 (241-371)||(31195844-31195975)
chr6 (274-342)||(3212523-3212591)
chr6 (356-408)||(10894457-10894509)
chr6 (236-371)||(1036801-1036937)
chr6 (307-373)||(6708014-6708080)
chr6 (236-369)||(7188756-7188887)
chr6 (258-342)||(32130663-32130747)
[»] scaffold0250 (1 HSPs)
scaffold0250 (258-342)||(5542-5626)
[»] scaffold0060 (1 HSPs)
scaffold0060 (274-371)||(30419-30516)
[»] scaffold0240 (1 HSPs)
scaffold0240 (291-338)||(10663-10710)


Alignment Details
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 274 - 412
Target Start/End: Original strand, 17892294 - 17892432
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcc 373  Q
    |||| ||||| |||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||       ||||||||||||| ||||||||||    
T  17892294 tatcatacaccgatacctgcccgatacttcccgatatgtatcagaagagtatccgaagattaaattttattttaaaaaaaaataattatatgatacttcc 17892393  T
Q  374 taatacgtatcaagagcgtatccgatcattatcctacac 412  Q
     ||||||||||| ||| |||||| |||||||||||||||    
T  17892394 caatacgtatcaggagagtatccaatcattatcctacac 17892432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 297 - 412
Target Start/End: Complemental strand, 24793780 - 24793665
Alignment:
Q  297 atacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatcc 396  Q
    |||||| |||||| ||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||| ||||||||||| ||| ||||||    
T  24793780 atacttttcgatacgtatcagaagagtatccgaagattaaattttattttttaaaaaaataattatctgatacttcccaatacgtatcaggagagtatcc 24793681  T
Q  397 gatcattatcctacac 412  Q
    ||||||||||||||||    
T  24793680 gatcattatcctacac 24793665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 412
Target Start/End: Original strand, 36943746 - 36943853
Alignment:
Q  305 cgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcatta 404  Q
    ||||| ||||||||||||| ||||||||||||| ||||        |||||||||||||||||||||||| |||||||||| ||| ||||| ||||||||    
T  36943746 cgatacgtatcagaagagtatccgaagattaaaatttattttttttaaaaataattatctgatacttcctgatacgtatcaggagagtatctgatcatta 36943845  T
Q  405 tcctacac 412  Q
    ||||||||    
T  36943846 tcctacac 36943853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 305 - 408
Target Start/End: Complemental strand, 31946267 - 31946164
Alignment:
Q  305 cgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcatta 404  Q
    ||||| ||||||||||||| ||||||||||||||||||       |||||||||||||| |||||||||  |||||||||| ||| ||||||||| ||||    
T  31946267 cgatacgtatcagaagagtatccgaagattaaattttatttttaaaaaaaataattatccgatacttcccgatacgtatcaggagagtatccgataatta 31946168  T
Q  405 tcct 408  Q
    ||||    
T  31946167 tcct 31946164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 291 - 408
Target Start/End: Complemental strand, 36511989 - 36511871
Alignment:
Q  291 tgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta-nnnnnnnaaaaaataattatctgatacttcctaatacgtatcaagag 389  Q
    ||||||||||||  ||||| ||||||||||||| ||||||||||||||||||        |||||||||||||| |||||||||| |||||||||| ||     
T  36511989 tgcccgatactttccgatacgtatcagaagagtatccgaagattaaattttatttttttaaaaaaataattatccgatacttcctgatacgtatcaggaa 36511890  T
Q  390 cgtatccgatcattatcct 408  Q
     ||||||||| ||||||||    
T  36511889 agtatccgataattatcct 36511871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 281 - 412
Target Start/End: Original strand, 754224 - 754354
Alignment:
Q  281 cactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacg 380  Q
    ||||| || |||||||||| ||   |||| ||||||||| ||| |||||||||||| |||||       ||||||||||||||  ||||||||| |||||    
T  754224 cactgttacctgcccgataatttctgatacgtatcagaacagtatccgaagattaa-ttttatcattttaaaaaataattatcatatacttcctgatacg 754322  T
Q  381 tatcaagagcgtatccgatcattatcctacac 412  Q
    ||||| ||| ||||||||||||||||||||||    
T  754323 tatcaggagagtatccgatcattatcctacac 754354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 371
Target Start/End: Original strand, 19738704 - 19738840
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || |||    
T  19738704 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatccggagagtatccaaatatt 19738803  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       |||||||||||||| |||||||    
T  19738804 aaattttatttttttaaaaaataattatccgatactt 19738840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 408
Target Start/End: Original strand, 40694138 - 40694250
Alignment:
Q  296 gatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatc 395  Q
    |||||||| ||||| ||||||| ||||| || |||||||||||||||       | ||||||||||||||||||||||  |||||||| | ||| |||||    
T  40694138 gatacttcccgatacgtatcaggagagtatctgaagattaaattttatttttttataaaataattatctgatacttcccgatacgtatgaggagagtatc 40694237  T
Q  396 cgatcattatcct 408  Q
    | || ||||||||    
T  40694238 caataattatcct 40694250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 371
Target Start/End: Complemental strand, 52122980 - 52122844
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||| ||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || |||    
T  52122980 ccgatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatccggagagtatccaaatatt 52122881  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       ||||||||||||||||||||||    
T  52122880 aaattttatttttttaaaaaataattatctgatactt 52122844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 371
Target Start/End: Complemental strand, 55901192 - 55901114
Alignment:
Q  293 cccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||||||||||| ||||||| | | | ||||||||||||||||||       ||||||||||||||||||||||    
T  55901192 cccgatacttctcgatacgtatcaggaaaatatccgaagattaaattttatttttaaaaaaaataattatctgatactt 55901114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 330
Target Start/End: Original strand, 1176988 - 1177083
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaa 330  Q
    |||| |||||||||||| |||  || ||||||||| || |||||| |||  ||| |||||||||||||  ||||||||||||||||||| ||||||    
T  1176988 ccgatacttcaaaatagttgacgtatcgtatcccctacgtatcctgcacccatacctgcccgatactttccgatatgtatcagaagagtatccgaa 1177083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 21637734 - 21637808
Alignment:
Q  297 atacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||| ||||| ||||||| ||||| ||||||||||||||||||       |||||| |||||||||||||||    
T  21637734 atacttcccgatacgtatcaggagagtatccgaagattaaattttatttttttaaaaaacaattatctgatactt 21637808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 406
Target Start/End: Complemental strand, 726552 - 726496
Alignment:
Q  350 aaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatc 406  Q
    ||||| ||||||||  ||||||||| |||||||||| ||| ||||||||||||||||    
T  726552 aaaaagtaattatcatatacttcctgatacgtatcaggagagtatccgatcattatc 726496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 412
Target Start/End: Complemental strand, 3109356 - 3109239
Alignment:
Q  295 cgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtat 394  Q
    ||||| || |||||| ||||||||||| |   ||||||||||||||||       || ||||||||||| ||||||||   |||||||||  ||| ||||    
T  3109356 cgatatttttcgatacgtatcagaagattaatcgaagattaaattttattttttaaacaaataattatccgatacttctcgatacgtatccggagagtat 3109257  T
Q  395 ccgatcattatcctacac 412  Q
    || |||||||||||||||    
T  3109256 ccaatcattatcctacac 3109239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 371
Target Start/End: Original strand, 39957630 - 39957707
Alignment:
Q  294 ccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatactt 371  Q
    |||||||||||||||| ||||| | ||||| |||||| |||||||||||       |||||||||||||| |||||||    
T  39957630 ccgatacttctcgatacgtatccggagagtatccgaatattaaattttatttttttaaaaaataattatccgatactt 39957707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 342
Target Start/End: Original strand, 5834837 - 5834944
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| ||||||||| |||| ||||| ||||| | ||||| ||| || |||    
T  5834837 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatgcttcccgatacgtatcgggagagtatccaaatatt 5834936  T
Q  335 aaatttta 342  Q
    ||||||||    
T  5834937 aaatttta 5834944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 371
Target Start/End: Complemental strand, 8064220 - 8064084
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| |||||||||||||  ||||| ||||| | ||||| ||  || |||    
T  8064220 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatactttccgatacgtatccggagagtatctaaatatt 8064121  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       |||||||||||||| |||||||    
T  8064120 aaattttatttttttaaaaaataattatccgatactt 8064084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 342
Target Start/End: Original strand, 52721276 - 52721378
Alignment:
Q  241 acttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatt 339  Q
    ||||||||||||||||  || |||||||||  | |||||| ||| |||||||||| |||||||| ||||| ||||  | ||||| ||| || ||||||||    
T  52721276 acttcaaaatagatgacgtatcgtatcccctgcgtatcctgcaccgatatctgcctgatacttcccgatacgtattcggagagtatccaaatattaaatt 52721375  T
Q  340 tta 342  Q
    |||    
T  52721376 tta 52721378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 368
Target Start/End: Complemental strand, 5325793 - 5325699
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgata 368  Q
    |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || |||||||||||       |||||||||||||| ||||    
T  5325793 tatcctgcaccgatacctgcccgatacttcccgatacgtatctggagagtatccaaatattaaattttatttttaaaaaaaataattatccgata 5325699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 406
Target Start/End: Complemental strand, 46431983 - 46431873
Alignment:
Q  296 gatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatc 395  Q
    |||||||| ||||| ||||||  ||||| ||| ||||||||||||||       |||||||||||||| |||||||    ||| |||||| ||| |||||    
T  46431983 gatacttcccgatacgtatcaagagagtatccaaagattaaattttattttaaaaaaaaataattatccgatacttttcgatatgtatcaggagagtatc 46431884  T
Q  396 cgatcattatc 406  Q
    |||| ||||||    
T  46431883 cgataattatc 46431873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 371
Target Start/End: Original strand, 53322383 - 53322480
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatactt 371  Q
    |||||| |||||||| | || ||||||||| ||||| ||||| | ||||| ||| || |||||||||||       |||||||||||||| |||||||    
T  53322383 tatcctgcactgataccggctcgatacttcccgatacgtatccggagagtatccaaatattaaattttatttttttaaaaaataattatccgatactt 53322480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 24929317 - 24929420
Alignment:
Q  37 gaagctgcagtttcatatgaaatgtgaaactttgtcttgttggcattcaaatgtttgaaatggaagacaagaaacacattcaaa---aataaaagattta 133  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||   |||||||||||||    
T  24929317 gaagctgcagtttcatttgatatgtgaaactttgtcttgttggcattcaaatgtttgaaacggaagacaagaaacacattaaaaaataataaaagattta 24929416  T
Q  134 taga 137  Q
    ||||    
T  24929417 taga 24929420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 241 - 408
Target Start/End: Original strand, 24956260 - 24956428
Alignment:
Q  241 acttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatt 339  Q
    |||||||||| |||||  || ||||||||| ||||||| | || |||||  |||| |||||||  ||||| ||||||  ||||| |||||||||||||||    
T  24956260 acttcaaaattgatgacgtatcgtatcccctacatatcatgcattgatacatgcctgatactttccgatacgtatcaagagagtatccgaagattaaatt 24956359  T
Q  340 ttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcct 408  Q
    |||        ||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||||    
T  24956360 ttattttaaagaaaaataattatccgatacttcctaatacgtatcaagagagtatctgataattatcct 24956428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 412
Target Start/End: Original strand, 21409433 - 21409571
Alignment:
Q  273 atatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttc 372  Q
    ||||||| |||||||| ||||| ||||| || ||||| ||||||| ||||| ||| ||||||||||||||       |||| ||||||||| ||||||||    
T  21409433 atatcctgcactgatacctgcctgatacatcccgatacgtatcaggagagtatccaaagattaaattttatttttttaaaa-ataattatcggatacttc 21409531  T
Q  373 ctaatacgtatcaagagcgtatccgatcattatcctacac 412  Q
    ||||||||||||| ||| ||||| ||| ||||||||||||    
T  21409532 ctaatacgtatcaggagagtatctgataattatcctacac 21409571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 261 - 412
Target Start/End: Original strand, 33454100 - 33454251
Alignment:
Q  261 cgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataatt 360  Q
    |||||||||  | |||||| ||||||||| || | |||||||||||||| ||||||| | ||| ||||||||||||||||||       |||||||||||    
T  33454100 cgtatcccctgcgtatcctgcactgatatatgtcagatacttctcgatacgtatcaggaaagtatccgaagattaaattttattttttaaaaaaataatt 33454199  T
Q  361 atctgatacttcctaatacgtatcaagagcgtatccgatcattatcctacac 412  Q
    | ||||||||||| ||||| ||| |  || |||| |||| ||||||||||||    
T  33454200 agctgatacttcccaatacttattagaagagtattcgataattatcctacac 33454251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 243 - 408
Target Start/End: Original strand, 40041390 - 40041555
Alignment:
Q  243 ttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttt 341  Q
    ||||||||||||||| || |||||| || || ||||||  |||||||  || | ||||||||| |||| ||||||| ||||| |||||||||||||||||    
T  40041390 ttcaaaatagatgatgtatcgtatctcctacgtatcctgtactgatacatgtctgatacttcttgatacgtatcaggagagtatccgaagattaaatttt 40041489  T
Q  342 annnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcct 408  Q
    |       |||||||||||||| |||| ||||  |||||||||| ||| ||||||||| ||||||||    
T  40041490 a-ttttaaaaaaaataattatccgatatttcccgatacgtatcaggagagtatccgataattatcct 40041555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 413
Target Start/End: Complemental strand, 1400263 - 1400201
Alignment:
Q  351 aaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcctacaca 413  Q
    |||||||||||||||||||||||  |||||||||| ||| |||||||||||||||||||||||    
T  1400263 aaaaataattatctgatacttcccgatacgtatcaggagagtatccgatcattatcctacaca 1400201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 405
Target Start/End: Complemental strand, 44960246 - 44960076
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  || |||||||||  | |||||| |||||| | ||| | |||||||| ||||||||||||||||||| ||| ||||||    
T  44960246 ccgatacttcaaaatggatgacgtatcgtatcccctgcgtatcctgcactgacacctgtctgatacttcccgatatgtatcagaagagtatccaaagatt 44960147  T
Q  335 aaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattat 405  Q
    ||||||||        ||||||||||||| |||||||||  |||| ||||| | | ||||||||| |||||    
T  44960146 aaattttattttttgtaaaaataattatcggatacttcccgatacatatcaggggagtatccgataattat 44960076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 24929465 - 24929511
Alignment:
Q  177 aacaagagatttgaattcaattcttgcggtttgtttatttgttttgc 223  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  24929465 aacaagagatttgaattcaattcttgcggtttatttatttgttttgc 24929511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 411
Target Start/End: Original strand, 44269767 - 44269905
Alignment:
Q  272 catatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatactt 371  Q
    |||||||| |||| ||||||| | ||||||| |||||| ||||||| ||||| || |||||||||||||||       |||||||||||| | |||||||    
T  44269767 catatcctgcact-atatctgtctgatacttttcgatacgtatcagtagagtatctgaagattaaattttaatttttaaaaaaataattaaccgatactt 44269865  T
Q  372 cctaatacgtatcaagagcgtatccgatcattatcctaca 411  Q
    ||  |||||||||||||  ||||| ||| ||||| |||||    
T  44269866 cccgatacgtatcaagaaagtatctgataattattctaca 44269905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 406
Target Start/End: Original strand, 21179911 - 21180011
Alignment:
Q  306 gatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattat 405  Q
    |||||||||||| ||||| ||||||||||||||||||       ||| |||||||||| |||||||||  |||||||||| ||| ||||| ||| |||||    
T  21179911 gatatgtatcaggagagtatccgaagattaaattttattttaaaaaataataattatccgatacttcccgatacgtatcaggagagtatctgataattat 21180010  T
Q  406 c 406  Q
    |    
T  21180011 c 21180011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 399
Target Start/End: Original strand, 35159869 - 35160033
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||| || |||||||||  ||||| || ||| ||||  || |  ||||||| ||||| ||||||| ||||| ||||||||||    
T  35159869 ccgatacttcaaaatggatgatgtatcgtatcccctgcatattctgcaccgatacttgtctaatacttcccgatacgtatcaggagagtatccgaagatt 35159968  T
Q  335 aaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgat 399  Q
    ||||||||       ||||||||||||||||||| ||||  |||| |||||  || |||||||||    
T  35159969 aaattttattttaaaaaaaaataattatctgatagttcccgatacatatcagaagagtatccgat 35160033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 408
Target Start/End: Complemental strand, 23970187 - 23970064
Alignment:
Q  285 gatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatc 384  Q
    |||||||| | ||||||||  |||| |||| |||||||| || |||||||||||||||       |||||||||||| | ||||||| |  |||||||||    
T  23970187 gatatctgtctgatacttcctgatacgtattagaagagtatctgaagattaaattttattttcttaaaaaataattacccgatactttccgatacgtatc 23970088  T
Q  385 aagagcgtatccgatcattatcct 408  Q
    | ||| ||||||||| ||||||||    
T  23970087 aggagagtatccgataattatcct 23970064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 342
Target Start/End: Original strand, 23311736 - 23311833
Alignment:
Q  246 aaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    |||||||||||| |||||||||||     |||||| ||| ||||| || | |||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  23311736 aaaatagatgatgtaccgtatcccatgtgtatcctgcaccgatatatgtctgatacttcccgatatgtatcaggagagtatccgaagattaaatttta 23311833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 18114011 - 18113943
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    |||||| ||| |||||||||| ||||||||  |||||||||||| ||||| || |||||||||||||||    
T  18114011 tatcctgcaccgatatctgcctgatacttcctgatatgtatcaggagagtatctgaagattaaatttta 18113943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 26773784 - 26773716
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    |||||| ||| ||||||||||||||||||||||||| ||||| | ||||| ||| || |||||||||||    
T  26773784 tatcctgcaccgatatctgcccgatacttctcgatacgtatcgggagagtatccaaatattaaatttta 26773716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 371
Target Start/End: Original strand, 48163435 - 48163548
Alignment:
Q  258 taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaata 357  Q
    ||||||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || |||||||||||       ||||||||    
T  48163435 taccgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatccggagagtatccaaatattaaattttatttttttaaaaaata 48163534  T
Q  358 attatctgatactt 371  Q
    |||||| |||||||    
T  48163535 attatccgatactt 48163548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 371
Target Start/End: Original strand, 11829693 - 11829829
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||||||||| |||||||| | ||| ||||| | ||||| ||| || |||    
T  11829693 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatatctgcctgatacttcccaatacgtatccggagagtatccaaatatt 11829792  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       |||||||||||||| |||||||    
T  11829793 aaattttatttttaaaaaaaataattatccgatactt 11829829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 371
Target Start/End: Original strand, 27353925 - 27354061
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  |||||||| |||  | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || |||    
T  27353925 ccgatacttcaaaatggatgacgtaccgtattccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatccggagagtatccaaatatt 27354024  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       |||||||||||||| |||||||    
T  27354025 aaattttatttttttaaaaaataattatccgatactt 27354061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 408
Target Start/End: Complemental strand, 554930 - 554828
Alignment:
Q  306 gatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattat 405  Q
    |||| ||||||| ||||| | ||||||||||||||||        ||||||||||||| |||||||||  ||| |||||| ||| ||||||||| |||||    
T  554930 gatacgtatcaggagagtattcgaagattaaattttattttttttaaaaataattatccgatacttcccgataagtatcaggagagtatccgataattat 554831  T
Q  406 cct 408  Q
    |||    
T  554830 cct 554828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 26973118 - 26973163
Alignment:
Q  296 gatacttctcgatatgtatcagaagagtgtccgaagattaaatttt 341  Q
    ||||||| |||||| ||||||||||||| |||||||||||||||||    
T  26973118 gatacttttcgatacgtatcagaagagtatccgaagattaaatttt 26973163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 19820916 - 19820868
Alignment:
Q  294 ccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    |||||||||  ||||||||||||| ||||| ||||||||||||||||||    
T  19820916 ccgatactttccgatatgtatcaggagagtatccgaagattaaatttta 19820868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 342
Target Start/End: Original strand, 25969401 - 25969508
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  || |||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || |||    
T  25969401 ccgatacttcaaaatggatgacgtatcgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatccggagagtatccaaatatt 25969500  T
Q  335 aaatttta 342  Q
    ||||||||    
T  25969501 aaatttta 25969508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 371
Target Start/End: Original strand, 40095654 - 40095790
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| |||||||||||||  ||||| ||||| | ||||| ||  || |||    
T  40095654 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatactttccgatacgtatccggagagtatctaaatatt 40095753  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       |||||||||||||| |||||||    
T  40095754 aaattttatttttttaaaaaataattatccgatactt 40095790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 342
Target Start/End: Complemental strand, 9250528 - 9250426
Alignment:
Q  241 acttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatt 339  Q
    |||||||||| |||||  || |||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || ||||||||    
T  9250528 acttcaaaatggatgacgtatcgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatccggagagtatccaaatattaaatt 9250429  T
Q  340 tta 342  Q
    |||    
T  9250428 tta 9250426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 342
Target Start/End: Complemental strand, 34122723 - 34122621
Alignment:
Q  241 acttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatt 339  Q
    |||||||||| |||||  |||||||||| |  | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || ||||||||    
T  34122723 acttcaaaatggatgacgtaccgtatcctctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatctggagagtatccaaatattaaatt 34122624  T
Q  340 tta 342  Q
    |||    
T  34122623 tta 34122621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 339
Target Start/End: Original strand, 38064645 - 38064703
Alignment:
Q  281 cactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatt 339  Q
    |||||||| ||| |||||||||  ||||| ||||||| ||||| |||||||||||||||    
T  38064645 cactgatacctgaccgatactttccgatacgtatcaggagagtatccgaagattaaatt 38064703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 371
Target Start/End: Original strand, 38263053 - 38263139
Alignment:
Q  285 gatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatactt 371  Q
    |||| |||||||||||||  ||||| ||||| | ||||| ||| || |||||||||||       ||||||||||||||||||||||    
T  38263053 gatacctgcccgatactttccgatacgtatccggagagtatccaaatattaaattttatttttttaaaaaataattatctgatactt 38263139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 412
Target Start/End: Complemental strand, 15878394 - 15878358
Alignment:
Q  376 atacgtatcaagagcgtatccgatcattatcctacac 412  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  15878394 atacgtatcaggagagtatccgatcattatcctacac 15878358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 241 - 408
Target Start/End: Original strand, 26716285 - 26716453
Alignment:
Q  241 acttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatt 339  Q
    |||||||||| |||||  || |||||||||  | |||||||||| |||| ||||| |||||||| ||||| ||||||||||||| |||||||||||||||    
T  26716285 acttcaaaatggatgacgtatcgtatcccctgcgtatcctacaccgatacctgcctgatacttcccgatacgtatcagaagagtatccgaagattaaatt 26716384  T
Q  340 ttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcct 408  Q
    |||       |||||||||||||| |||||||||  |||||||||| ||| ||||||||| ||||||||    
T  26716385 ttatttttttaaaaaataattatccgatacttcccgatacgtatcaggagagtatccgataattatcct 26716453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 241 - 408
Target Start/End: Original strand, 26986025 - 26986193
Alignment:
Q  241 acttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatt 339  Q
    |||||||||| |||||  || |||||||||  | |||||||||| |||| ||||| |||||||| ||||| ||||||||||||| |||||||||||||||    
T  26986025 acttcaaaatggatgacgtatcgtatcccctgcgtatcctacaccgatacctgcctgatacttcccgatacgtatcagaagagtatccgaagattaaatt 26986124  T
Q  340 ttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcct 408  Q
    |||       |||||||||||||| |||||||||  |||||||||| ||| ||||||||| ||||||||    
T  26986125 ttatttttttaaaaaataattatccgatacttcccgatacgtatcaggagagtatccgataattatcct 26986193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 311 - 412
Target Start/End: Original strand, 27938242 - 27938343
Alignment:
Q  311 gtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcctac 410  Q
    ||||||||||||| ||||||||||||||||||       |||||||||||||| ||||||||| ||||||||||| ||| ||||||||| ||||||||||    
T  27938242 gtatcagaagagtatccgaagattaaattttatttttttaaaaaataattatccgatacttcccaatacgtatcaggagagtatccgataattatcctac 27938341  T
Q  411 ac 412  Q
    ||    
T  27938342 ac 27938343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 408
Target Start/End: Complemental strand, 17138364 - 17138192
Alignment:
Q  236 ccgaaacttcaaaatagatgattaccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatta 335  Q
    |||| ||||||||||||||||     ||||||||  | |||||| ||| ||||  |||| |||||||| ||||| ||||||| ||| | |||||||||||    
T  17138364 ccgatacttcaaaatagatgacgtatgtatcccctgcgtatcctgcaccgataattgcctgatacttcccgatacgtatcaggagaatatccgaagatta 17138265  T
Q  336 aattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcct 408  Q
    |||||||       ||||| ||||||||||||||||||  |||||||||| ||| ||||||||| ||||||||    
T  17138264 aattttatttttttaaaaagtaattatctgatacttcccgatacgtatcaggagagtatccgataattatcct 17138192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 236 - 373
Target Start/End: Complemental strand, 30284718 - 30284580
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| ||||| |||||||| ||||| ||||||| ||||| ||||||||||    
T  30284718 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcctgatacttcccgatacgtatcaggagagtatccgaagatt 30284619  T
Q  335 aaattttannnnnnnaaaaaataattatctgatacttcc 373  Q
    ||||||||       |||||||||||||| |||||||||    
T  30284618 aaattttattttaaaaaaaaataattatccgatacttcc 30284580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 275 - 408
Target Start/End: Complemental strand, 5612513 - 5612380
Alignment:
Q  275 atcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcct 374  Q
    ||||| || ||||| |||||||||||||   |||| ||| ||| ||||| ||||||||||||||||||       |||||||||||||| ||||||||||    
T  5612513 atcctgcattgataactgcccgatactttctgatacgtaccaggagagtatccgaagattaaattttatttttttaaaaaataattatccgatacttcct 5612414  T
Q  375 aatacgtatcaagagcgtatccgatcattatcct 408  Q
     |||||||||| ||| ||||| ||| ||||||||    
T  5612413 gatacgtatcaggagagtatctgataattatcct 5612380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 413
Target Start/End: Original strand, 1795425 - 1795578
Alignment:
Q  261 cgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta-nnnnnnnaaaaaataat 359  Q
    |||||||||  | |||||| ||| |||| |||||||||||||  ||||| ||||||||||||| ||||||||||||||||||         |||||||||    
T  1795425 cgtatcccctccgtatcctgcaccgatacctgcccgatactttccgatacgtatcagaagagtatccgaagattaaattttatttttttttaaaaataat 1795524  T
Q  360 tatctgatacttcctaatacgtatcaagagcgtatccgatcattatcctacaca 413  Q
    |||| |||||||||  ||||||||||  |  ||||||||| |||||||| ||||    
T  1795525 tatccgatacttcccgatacgtatcagaaaagtatccgataattatcctgcaca 1795578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 236 - 371
Target Start/End: Complemental strand, 32707942 - 32707806
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || |||    
T  32707942 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatccggagagtatccaaatatt 32707843  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       ||||||||||||||||||||||    
T  32707842 aaattttatttttttaaaaaataattatctgatactt 32707806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 5722020 - 5722130
Alignment:
Q  261 cgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataatt 360  Q
    |||||||||  | |||||| ||||||||  ||||||||||||||| |||  |||||| | ||| ||||||||||||||||||       |||||||||||    
T  5722020 cgtatcccctgcgtatcctgcactgatacatgcccgatacttctcaatacatatcaggaaagtatccgaagattaaattttatttttaaaaaaaataatt 5722119  T
Q  361 atctgatactt 371  Q
    |||||||||||    
T  5722120 atctgatactt 5722130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 408
Target Start/End: Original strand, 26691623 - 26691796
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| ||||||||||||||||  || |||||||||  | ||| || ||| |||| ||| | |||||||| ||||| ||||||  ||||| ||||||||||    
T  26691623 ccgatacttcaaaatagatgacgtatcgtatcccctgcgtattctgcaccgatacctgtctgatacttcccgatacgtatcaagagagtatccgaagatt 26691722  T
Q  335 aaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcct 408  Q
    ||||||||        ||||||||||||| |||||||||  |||||||||| ||  |||| |||| ||||||||    
T  26691723 aaattttattttttttaaaaataattatccgatacttcccgatacgtatcaggatagtatgcgataattatcct 26691796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 408
Target Start/End: Original strand, 26961355 - 26961528
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| ||||||||||||||||  || |||||||||  | ||| || ||| |||| ||| | |||||||| ||||| ||||||  ||||| ||||||||||    
T  26961355 ccgatacttcaaaatagatgacgtatcgtatcccctgcgtattctgcaccgatacctgtctgatacttcccgatacgtatcaagagagtatccgaagatt 26961454  T
Q  335 aaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcct 408  Q
    ||||||||        ||||||||||||| |||||||||  |||||||||| ||  |||| |||| ||||||||    
T  26961455 aaattttattttttttaaaaataattatccgatacttcccgatacgtatcaggatagtatgcgataattatcct 26961528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 380
Target Start/End: Original strand, 34032437 - 34032521
Alignment:
Q  296 gatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacg 380  Q
    |||||||| ||||| ||||||| ||||| |||||||||||| |||||       |||||||||||||||||||||||| ||||||    
T  34032437 gatacttcccgatacgtatcaggagagtatccgaagattaatttttattttttaaaaaaataattatctgatacttcccaatacg 34032521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 371
Target Start/End: Complemental strand, 41392818 - 41392687
Alignment:
Q  241 acttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatt 339  Q
    |||||||||| |||||  ||||||||||||  | |||||| ||| |||| |||||||||||||| ||||||||||| |  |||| ||| || ||||||||    
T  41392818 acttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatatgtatccggggagtatccaaatattaaatt 41392719  T
Q  340 ttannnnnnnaaaaaataattatctgatactt 371  Q
    |||       |||||||||| |||||||||||    
T  41392718 ttattttaaaaaaaaataataatctgatactt 41392687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 408
Target Start/End: Complemental strand, 43357831 - 43357697
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcc 373  Q
    |||||| ||| |||| ||| | |||||||  ||||| |||| | |||||| ||||||||||||||||||       |||||||||||||| |||||||||    
T  43357831 tatcctgcaccgatacctgtctgatactttccgatacgtattaaaagagtatccgaagattaaattttatttttttaaaaaataattatccgatacttcc 43357732  T
Q  374 taatacgtatcaagagcgtatccgatcattatcct 408  Q
      |||||||||| ||  ||||| ||| ||||||||    
T  43357731 cgatacgtatcaggaaagtatctgataattatcct 43357697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 406
Target Start/End: Complemental strand, 18002014 - 18001905
Alignment:
Q  297 atacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatcc 396  Q
    ||||||| |||||  |||||| ||||| |  |||||||||||||||        ||||||||||||||||||||| |  |||||||||||||| ||||||    
T  18002014 atacttcccgatacatatcaggagagtatttgaagattaaattttattttttttaaaaataattatctgatactttccgatacgtatcaagagagtatcc 18001915  T
Q  397 gatcattatc 406  Q
    ||| ||||||    
T  18001914 gataattatc 18001905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 342
Target Start/End: Complemental strand, 1639893 - 1639786
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||| ||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| ||||||| ||| || |||    
T  1639893 ccgatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatccgaagagtatccaaatatt 1639794  T
Q  335 aaatttta 342  Q
    ||||||||    
T  1639793 aaatttta 1639786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 371
Target Start/End: Complemental strand, 39690874 - 39690738
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| ||||||||||||||  |||| ||||| | ||||| ||| || |||    
T  39690874 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatacttcctgatacgtatccggagagtatccaaatatt 39690775  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       |||||||||||||| |||||||    
T  39690774 aaattttatttttttaaaaaataattatccgatactt 39690738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 11906264 - 11906332
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    |||||| ||| |||||||| |||||||||| ||||| ||||| | ||||| |||||| |||||||||||    
T  11906264 tatcctgcaccgatatctgtccgatacttcccgatacgtatccggagagtatccgaatattaaatttta 11906332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 12190431 - 12190499
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    |||||| |||||||||||| ||||||||||| |||| ||||||| ||||| | |  |||||||||||||    
T  12190431 tatcctgcactgatatctgtccgatacttcttgatacgtatcaggagagtattcagagattaaatttta 12190499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 336
Target Start/End: Complemental strand, 42366209 - 42366113
Alignment:
Q  241 acttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaa 336  Q
    ||||||||||||||||| ||| ||||||||  | |||||| |||||||| |||||||||| ||| | |||  |||||| ||| | ||||||||||||    
T  42366209 acttcaaaatagatgatgtactgtatcccctgcgtatcctgcactgatacctgcccgatatttcccaatacctatcaggagaatatccgaagattaa 42366113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 408
Target Start/End: Original strand, 11694328 - 11694383
Alignment:
Q  353 aaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcct 408  Q
    |||||||||||||||||||||  ||||||||||||||  |||| ||| ||||||||    
T  11694328 aaataattatctgatacttcccgatacgtatcaagagaatatctgataattatcct 11694383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 408
Target Start/End: Original strand, 25749731 - 25749786
Alignment:
Q  353 aaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcct 408  Q
    ||||||||||||||||||| |  |||||||||| ||| ||||||||| ||||||||    
T  25749731 aaataattatctgatactttccgatacgtatcaggagagtatccgataattatcct 25749786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 342
Target Start/End: Original strand, 19321441 - 19321487
Alignment:
Q  296 gatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    ||||| || |||| |||||||||||||| ||||||||||||||||||    
T  19321441 gatacatcccgatgtgtatcagaagagtatccgaagattaaatttta 19321487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 342
Target Start/End: Complemental strand, 19102538 - 19102469
Alignment:
Q  273 atatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    |||||||||| ||||||||| ||||||  || ||||| ||||||||||||| | |||  |||||||||||    
T  19102538 atatcctacattgatatctgtccgatatgtcccgatacgtatcagaagagtatacgacaattaaatttta 19102469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 371
Target Start/End: Original strand, 32624934 - 32625020
Alignment:
Q  285 gatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatactt 371  Q
    |||| |||||||||||||| ||||| ||||  ||||||| ||| || |||||||||||       |||||||||||||| |||||||    
T  32624934 gatacctgcccgatacttcccgatacgtattcgaagagtatccaaatattaaattttatttttttaaaaaataattatccgatactt 32625020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 3701244 - 3701312
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    |||||| ||| |||||||| | ||||||||  ||||||| |||| ||||| || |||||||||||||||    
T  3701244 tatcctgcaccgatatctgtctgatacttcctgatatgtttcaggagagtatctgaagattaaatttta 3701312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 7629127 - 7629203
Alignment:
Q  296 gatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcc 373  Q
    |||||||| ||||| ||||||| ||||| || |||||||||||||||       |||||| |||||||||||||||||    
T  7629127 gatacttcccgatacgtatcaggagagtatctgaagattaaattttattttgaaaaaaaa-aattatctgatacttcc 7629203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 30777594 - 30777526
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || |||||||||||    
T  30777594 tatcctgcaccgatacctgcccgatacttcccgatacgtatccggagagtatccaaatattaaatttta 30777526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 294 - 413
Target Start/End: Original strand, 47642072 - 47642191
Alignment:
Q  294 ccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgta 393  Q
    |||||||||| | ||| ||||||||||||| ||||||||||||||||||       ||||||||||||||||||||||||  |||||||||| ||| |||    
T  47642072 ccgatacttcccaatacgtatcagaagagtatccgaagattaaattttattttataaaaaaataattatctgatacttcccgatacgtatcaggagagta 47642171  T
Q  394 tccgatcattatcctacaca 413  Q
    ||||||||||||||||||||    
T  47642172 tccgatcattatcctacaca 47642191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 274 - 411
Target Start/End: Original strand, 28968556 - 28968694
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcc 373  Q
    |||||| ||| |||| |||||||||||||| ||||| ||||||||||||| ||||||||||||||||||       |||||||||||||| |||||||||    
T  28968556 tatcctgcaccgatacctgcccgatacttcccgatacgtatcagaagagtatccgaagattaaattttatttttaaaaaaaataattatccgatacttcc 28968655  T
Q  374 taatacgtatcaagagcgt-atccgatcattatcctaca 411  Q
      |||||||||| ||| || |||||||||||||||||||    
T  28968656 cgatacgtatcaggagagtaatccgatcattatcctaca 28968694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 236 - 408
Target Start/End: Original strand, 45347306 - 45347478
Alignment:
Q  236 ccgaaacttcaaaatagatgattaccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatta 335  Q
    |||| |||||||||| | ||| || |||||||||  | |||||| |||||||| ||||||||||||| |||||| ||||| ||||||| |||||||||||    
T  45347306 ccgatacttcaaaatggttgactatcgtatcccctgc-tatcctgcactgatacctgcccgatacttttcgatacgtatccgaagagtatccgaagatta 45347404  T
Q  336 aatttta-nnnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcct 408  Q
    |||||||        |||||||||||||| |||||||||| |||||||||| ||  ||||| ||| ||||||||    
T  45347405 aattttattttttttaaaaaataattatccgatacttcctgatacgtatcaggaaagtatctgataattatcct 45347478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 275 - 408
Target Start/End: Complemental strand, 21157800 - 21157667
Alignment:
Q  275 atcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcct 374  Q
    ||||| || ||||| |||||||||||||   |||| ||| ||| ||||| ||||||||||||||||||       |||||||||||||| ||||||||||    
T  21157800 atcctgcattgataactgcccgatactttctgatacgtaccaggagagtatccgaagattaaattttatttttttaaaaaataattatccgatacttcct 21157701  T
Q  375 aatacgtatcaagagcgtatccgatcattatcct 408  Q
     |||||||||| ||| ||||| ||| ||||||||    
T  21157700 gatacgtatcaggagagtatctgataattatcct 21157667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 406
Target Start/End: Complemental strand, 22289771 - 22289661
Alignment:
Q  296 gatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatc 395  Q
    ||||||||  |||| ||||||| ||||| ||||||||||||||||||       |||||||||| ||||||||||| ||||||||||||| ||| |||||    
T  22289771 gatacttcctgatacgtatcaggagagtatccgaagattaaattttatttctttaaaaaataatcatctgatactttctaatacgtatcaggagagtatc 22289672  T
Q  396 cgatcattatc 406  Q
     ||| ||||||    
T  22289671 tgataattatc 22289661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 286 - 409
Target Start/End: Complemental strand, 7899779 - 7899655
Alignment:
Q  286 atatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnna-aaaaataattatctgatacttcctaatacgtatc 384  Q
    ||||||||  |||| ||| ||||| ||||||||||||| ||||||||||||||||||       | ||||||||||||| |||||||||  |||||||||    
T  7899779 atatctgcttgatatttcccgatacgtatcagaagagtatccgaagattaaattttatttttttacaaaaataattatccgatacttcccgatacgtatc 7899680  T
Q  385 aagagcgtatccgatcattatccta 409  Q
      ||| ||||| |||||||||||||    
T  7899679 gggagagtatctgatcattatccta 7899655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 274 - 406
Target Start/End: Complemental strand, 13748519 - 13748388
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcc 373  Q
    |||||| ||| |||| |||||||||||||  ||||| ||||||||||||| ||||||||||||||||||         ||||||||||||||||||||||    
T  13748519 tatcctgcaccgatacctgcccgatactttccgatacgtatcagaagagtatccgaagattaaattttattttttt-taaaataattatctgatacttcc 13748421  T
Q  374 taatacgtatcaagagcgtatccgatcattatc 406  Q
      ||||||||||  |  ||||||||| ||||||    
T  13748420 cgatacgtatcagaaaagtatccgataattatc 13748388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 296 - 408
Target Start/End: Original strand, 19421484 - 19421596
Alignment:
Q  296 gatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatc 395  Q
    |||||||| ||||| ||||||| ||||| ||||||||||||||||||       ||||| |||||||| |||||||||  |||||||||| ||||||||     
T  19421484 gatacttcccgatacgtatcaggagagtatccgaagattaaattttatttttttaaaaagtaattatccgatacttcccgatacgtatcaggagcgtata 19421583  T
Q  396 cgatcattatcct 408  Q
     ||| ||||||||    
T  19421584 tgataattatcct 19421596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 296 - 408
Target Start/End: Complemental strand, 55269066 - 55268954
Alignment:
Q  296 gatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatc 395  Q
    |||||||| ||||| ||||||| ||||| ||||||||||||||||||       |||||||||||||| |||||||||  ||||| |||| ||  |||||    
T  55269066 gatacttcccgatacgtatcaggagagtatccgaagattaaattttatttttttaaaaaataattatccgatacttcccgatacgcatcaggatagtatc 55268967  T
Q  396 cgatcattatcct 408  Q
    |||| ||||||||    
T  55268966 cgataattatcct 55268954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 408
Target Start/End: Complemental strand, 41742144 - 41742010
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcc 373  Q
    |||||| ||| |||| || || |||||||| |||||  |||| | ||||| ||||||||||||||||||       |||||||||||||| | |||||||    
T  41742144 tatcctgcaccgataccttcctgatacttcccgatacatatctggagagtatccgaagattaaattttatttttaaaaaaaataattatccggtacttcc 41742045  T
Q  374 taatacgtatcaagagcgtatccgatcattatcct 408  Q
      |||||||||| ||| ||||||||| ||||||||    
T  41742044 cgatacgtatcaggagagtatccgataattatcct 41742010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 408
Target Start/End: Complemental strand, 6134432 - 6134320
Alignment:
Q  296 gatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatc 395  Q
    |||||||| ||||||||||||| ||||| |||||||||||||| |||       |||||||||||||| |||||||||  |||  ||||| ||| ||||     
T  6134432 gatacttcccgatatgtatcaggagagtatccgaagattaaatattattttttaaaaaaataattatccgatacttcccgatatttatcaggagagtatt 6134333  T
Q  396 cgatcattatcct 408  Q
    |||| ||||||||    
T  6134332 cgataattatcct 6134320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 408
Target Start/End: Complemental strand, 19879144 - 19879041
Alignment:
Q  305 cgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcatta 404  Q
    |||||||||| || ||||| |||||||||| |||||||       |||||||||||||| |||||||||  |||||||||| ||| |||| |||| ||||    
T  19879144 cgatatgtataaggagagtatccgaagattcaattttattttttaaaaaaataattatccgatacttcccgatacgtatcatgagagtattcgataatta 19879045  T
Q  405 tcct 408  Q
    ||||    
T  19879044 tcct 19879041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 369
Target Start/End: Original strand, 42229720 - 42229815
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatac 369  Q
    |||||| ||| |||| ||||||||||||||  |||| ||||||||||||| |||||| |||||||||||       |||||||||||||| |||||    
T  42229720 tatcctgcaccgatacctgcccgatacttcctgatacgtatcagaagagtatccgaaaattaaattttatttttaaaaaaaataattatccgatac 42229815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 398
Target Start/End: Original strand, 48334076 - 48334124
Alignment:
Q  350 aaaaaataattatctgatacttcctaatacgtatcaagagcgtatccga 398  Q
    ||||||||||||||||||||||||| |||||||||||||  ||||||||    
T  48334076 aaaaaataattatctgatacttcctgatacgtatcaagaaagtatccga 48334124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 406
Target Start/End: Complemental strand, 30787609 - 30787501
Alignment:
Q  299 acttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaa-aataattatctgatacttcctaatacgtatcaagagcgtatccg 397  Q
    ||||||||||| ||||||| ||||| ||||||||||||||||||       |||| ||||||||||  ||||||||  |||| ||||| ||| |||||||    
T  30787609 acttctcgatacgtatcaggagagtatccgaagattaaattttattttaaaaaaataataattatcctatacttcccgatacatatcaggagagtatccg 30787510  T
Q  398 atcattatc 406  Q
    || ||||||    
T  30787509 ataattatc 30787501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 342
Target Start/End: Original strand, 35389757 - 35389864
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || |||    
T  35389757 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatcgggagagtatccaaatatt 35389856  T
Q  335 aaatttta 342  Q
    ||||||||    
T  35389857 aaatttta 35389864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 371
Target Start/End: Original strand, 40497337 - 40497473
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| ||||  ||||||||||||| ||||| ||||| | ||||| ||| || |||    
T  40497337 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacttgcccgatacttcccgatacgtatccggagagtatccaaatatt 40497436  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       |||||||||||||| |||||||    
T  40497437 aaattttatttttaaaaaaaataattatccgatactt 40497473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 369
Target Start/End: Complemental strand, 1679786 - 1679675
Alignment:
Q  258 taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaata 357  Q
    |||||||||| |  |||||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || |||||||||||       ||||||||    
T  1679786 taccgtatccactgcatatcctgcaccgatacctgcccgatacttcccgatacgtatccggagagtatccaaatattaaattttatttttaaaaaaaata 1679687  T
Q  358 attatctgatac 369  Q
    |||||| |||||    
T  1679686 attatccgatac 1679675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 408
Target Start/End: Original strand, 25700806 - 25700941
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaa-aaaataattatctgatacttc 372  Q
    |||||| ||| |||| ||||| ||||||||   ||| ||||||| ||||| ||||||||||||||||||          |||||||||||| ||||||||    
T  25700806 tatcctgcaccgatacctgcctgatacttcctaatacgtatcaggagagtatccgaagattaaattttattttatttttaaaataattatccgatacttc 25700905  T
Q  373 ctaatacgtatcaagagcgtatccgatcattatcct 408  Q
    |  |||||||||| ||| ||||||||| ||||||||    
T  25700906 ccgatacgtatcaggagagtatccgataattatcct 25700941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 342
Target Start/End: Original strand, 983247 - 983308
Alignment:
Q  281 cactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    |||||||||||| | |||||||| ||||| ||||||| ||||| ||| ||||||||||||||    
T  983247 cactgatatctgtctgatacttcccgatacgtatcaggagagtatccaaagattaaatttta 983308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 369
Target Start/End: Original strand, 7327719 - 7327853
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| | | ||| ||| || |||    
T  7327719 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatccggatagtatccaaatatt 7327818  T
Q  335 aaattttannnnnnnaaaaaataattatctgatac 369  Q
    ||||||||       |||||||||||||| |||||    
T  7327819 aaattttatttttttaaaaaataattatccgatac 7327853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 398
Target Start/End: Original strand, 48333079 - 48333181
Alignment:
Q  296 gatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatc 395  Q
    |||| ||| |||||| ||| | |||||| | ||||||||||||||||       ||||||||||||| ||||||||||| |||||||||| ||  |||||    
T  48333079 gatatttcccgatatatattaaaagagtattcgaagattaaattttatattaaaaaaaaataattatttgatacttcctgatacgtatcaggaaagtatc 48333178  T
Q  396 cga 398  Q
    |||    
T  48333179 cga 48333181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 369
Target Start/End: Complemental strand, 45533041 - 45532957
Alignment:
Q  285 gatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatac 369  Q
    |||| |||||||||||||| ||||| ||||| ||||||| ||| || |||||||||||       |||||||||||||| |||||    
T  45533041 gatacctgcccgatacttcccgatacgtatccgaagagtatccaaatattaaattttatttttaaaaaaaataattatccgatac 45532957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 342
Target Start/End: Original strand, 52121187 - 52121294
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  || |||||||||  | |||||| |||| ||| ||| |||||||||||||||| ||||| | ||||| ||| || |||    
T  52121187 ccgatacttcaaaatggatgacgtatcgtatcccctgcgtatcctgcactaatacctgtccgatacttctcgatacgtatcgggagagtatccaaatatt 52121286  T
Q  335 aaatttta 342  Q
    ||||||||    
T  52121287 aaatttta 52121294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 342
Target Start/End: Original strand, 3983765 - 3983811
Alignment:
Q  296 gatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    |||||||| ||||| ||||||| ||||| ||||||||||||||||||    
T  3983765 gatacttcccgatacgtatcaggagagtatccgaagattaaatttta 3983811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 342
Target Start/End: Original strand, 30226432 - 30226534
Alignment:
Q  241 acttcaaaatagatga-ttaccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatt 339  Q
    |||||||||| ||||| ||| ||||||| |  | |||||| ||| |||| |||||||||||||   |||| ||||||  ||||| |||||||||||||||    
T  30226432 acttcaaaatggatgacttatcgtatcctctgcgtatcctgcaccgatacctgcccgatactttctgatacgtatcaagagagtatccgaagattaaatt 30226531  T
Q  340 tta 342  Q
    |||    
T  30226532 tta 30226534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 408
Target Start/End: Original strand, 39664082 - 39664136
Alignment:
Q  354 aataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcct 408  Q
    ||||||||||||||||||||  |||||||||| ||  ||||||||| ||||||||    
T  39664082 aataattatctgatacttcccgatacgtatcaggaaagtatccgataattatcct 39664136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 369
Target Start/End: Complemental strand, 42464979 - 42464884
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatac 369  Q
    |||||| ||| |||| |||||||||||||| ||||| ||||| ||||||| ||| || ||||| |||||       |||||||||||||| |||||    
T  42464979 tatcctgcaccgatacctgcccgatacttcccgatacgtatccgaagagtatccaaatattaatttttattgttttaaaaaataattatccgatac 42464884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 38889081 - 38889024
Alignment:
Q  351 aaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcct 408  Q
    |||||||||||| ||||||||||  || ||||||| ||| ||||||||| ||||||||    
T  38889081 aaaaataattatttgatacttcccgatgcgtatcaggagagtatccgataattatcct 38889024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 369
Target Start/End: Original strand, 48122832 - 48122966
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  |||||||| ||| ||||  ||||||||| ||| ||||| |||||   ||||| ||| || |||    
T  48122832 ccgatacttcaaaatggatgacgtaccgtatcccctgcatatcctgcaccgatacatgcccgatatttcccgatacgtatccagagagtatccaaatatt 48122931  T
Q  335 aaattttannnnnnnaaaaaataattatctgatac 369  Q
    ||||||||       |||||||||||||| |||||    
T  48122932 aaattttatttttttaaaaaataattatccgatac 48122966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 371
Target Start/End: Original strand, 28704757 - 28704870
Alignment:
Q  258 taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaata 357  Q
    ||||||||||||  |||||||| |||||||| ||  |||||||||  | ||||||||| | ||||| ||  || |||||||||||       ||||||||    
T  28704757 taccgtatcccctgcatatcctgcactgatacctatccgatactttccaatatgtatccggagagtatcaaaatattaaattttatttttttaaaaaata 28704856  T
Q  358 attatctgatactt 371  Q
    |||||| |||||||    
T  28704857 attatccgatactt 28704870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 371
Target Start/End: Complemental strand, 37996899 - 37996786
Alignment:
Q  258 taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaata 357  Q
    ||||||||||||  | |||||| ||| || | |||||||||| ||| ||||| ||||| | ||||| ||| || |||||||||||       ||||||||    
T  37996899 taccgtatcccctgcgtatcctgcaccgagacctgcccgatatttcccgatacgtatccggagagtatccaaatattaaattttatttttttaaaaaata 37996800  T
Q  358 attatctgatactt 371  Q
    |||||| |||||||    
T  37996799 attatccgatactt 37996786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 371
Target Start/End: Complemental strand, 52505905 - 52505808
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatactt 371  Q
    |||||| ||| |||| | |||||||| ||| ||||| ||||| ||||||| ||| || |||||||||||       |||||||||||||| |||||||    
T  52505905 tatcctgcaccgataccggcccgatatttcccgatacgtatccgaagagtatccaaatattaaattttatttttcaaaaaaataattatccgatactt 52505808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 236 - 416
Target Start/End: Original strand, 35342324 - 35342506
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  |||||||||||   | |||||| ||| |||| || || |||||||| ||||| |||||| |||||| ||||||||||    
T  35342324 ccgatacttcaaaatggatgacgtaccgtatcccttgcgtatcctgcaccgatacctacctgatacttcccgatacgtatcaaaagagtatccgaagatt 35342423  T
Q  335 aaatttta-nnnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcctacacaggt 416  Q
    ||||||||        ||||||||||||||||||||||||  |||||||||| ||| ||||||||||||||||||||||||||    
T  35342424 aaattttatttttaaaaaaaaataattatctgatacttcccgatacgtatcaggagagtatccgatcattatcctacacaggt 35342506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 274 - 406
Target Start/End: Original strand, 4561834 - 4561967
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta-nnnnnnnaaaaaataattatctgatacttc 372  Q
    |||||| ||| |||| |||||||||||||| |||||  |||||||||||| ||||||||||||||||||        |||||||||||||||||||||||    
T  4561834 tatcctgcaccgatacctgcccgatacttcccgatacatatcagaagagtatccgaagattaaattttatttttttaaaaaaataattatctgatacttc 4561933  T
Q  373 ctaatacgtatcaagagcgtatccgatcattatc 406  Q
    |  |||||||||| ||| ||||||||| ||||||    
T  4561934 ccgatacgtatcaggagagtatccgataattatc 4561967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 285 - 405
Target Start/End: Original strand, 34146237 - 34146357
Alignment:
Q  285 gatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatc 384  Q
    |||||||||| |||||||| ||||| ||||||| ||||| ||| ||||||||||||||       |||||||||||||| |||||||||| |||||||||    
T  34146237 gatatctgcctgatacttcccgatacgtatcaggagagtatccaaagattaaattttatttttaaaaaaaataattatccgatacttcctgatacgtatc 34146336  T
Q  385 aagagcgtatccgatcattat 405  Q
    | ||| ||||||||| |||||    
T  34146337 aggagagtatccgataattat 34146357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 296 - 408
Target Start/End: Original strand, 3563908 - 3564020
Alignment:
Q  296 gatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatc 395  Q
    |||||||| ||||| ||||||| ||||| ||||||||||||||||||       ||||||||||||||||||||||||  ||||||||||  || |||||    
T  3563908 gatacttcccgatacgtatcaggagagtatccgaagattaaattttatttctttaaaaaataattatctgatacttcccgatacgtatcagaagagtatc 3564007  T
Q  396 cgatcattatcct 408  Q
    |||| ||||||||    
T  3564008 cgataattatcct 3564020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 296 - 408
Target Start/End: Original strand, 2319343 - 2319455
Alignment:
Q  296 gatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatc 395  Q
    ||||||||  |||| ||||||||||||| ||||||||||||||||||       |||||||||||||| ||||| |||  |||||||||| ||| |||||    
T  2319343 gatacttcctgatacgtatcagaagagtatccgaagattaaattttatttttttaaaaaataattatccgatacgtcccgatacgtatcaggagagtatc 2319442  T
Q  396 cgatcattatcct 408  Q
    |||| ||||||||    
T  2319443 cgataattatcct 2319455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 236 - 371
Target Start/End: Original strand, 33324825 - 33324961
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||| ||||||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || |||    
T  33324825 ccgatacttcaaaatggatgatgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatccggagagtatccaaatatt 33324924  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       ||||||||||||||||||||||    
T  33324925 aaattttatttttaaaaaaaataattatctgatactt 33324961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 381
Target Start/End: Complemental strand, 38602433 - 38602287
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || |||    
T  38602433 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatccggagagtatccaaatatt 38602334  T
Q  335 aaattttannnnnnnaaaaaataattatctgatacttcctaatacgt 381  Q
    ||||||||       |||||||||||||||||||||| | |||||||    
T  38602333 aaattttatttttaaaaaaaataattatctgatactttccaatacgt 38602287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 408
Target Start/End: Original strand, 44156665 - 44156778
Alignment:
Q  296 gatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnn-aaaaaataattatctgatacttcctaatacgtatcaagagcgtat 394  Q
    |||||||| ||||| ||||||| ||||| ||||||||||||||||||        |||||||||||||| |||||||||| |||||||||| ||  ||||    
T  44156665 gatacttcccgatacgtatcaggagagtatccgaagattaaattttattttttttaaaaaataattatccgatacttcctgatacgtatcaggatggtat 44156764  T
Q  395 ccgatcattatcct 408  Q
    ||||| ||||||||    
T  44156765 ccgataattatcct 44156778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 372
Target Start/End: Complemental strand, 8482989 - 8482891
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttc 372  Q
    |||||| ||| |||||||| | |||||||  ||||| ||||||||||||| ||||||||||||||||||       |||||||||||||| ||||||||    
T  8482989 tatcctgcaccgatatctgtctgatactttccgatacgtatcagaagagtatccgaagattaaattttatttttttaaaaaataattatccgatacttc 8482891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 261 - 341
Target Start/End: Complemental strand, 28746737 - 28746657
Alignment:
Q  261 cgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttt 341  Q
    |||||||||  | |||||| ||| |||| ||||||||||||| |||||| ||||||||||||| |||||||||||| ||||    
T  28746737 cgtatcccctgcgtatcctgcaccgatacctgcccgatacttttcgatacgtatcagaagagtatccgaagattaattttt 28746657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 371
Target Start/End: Original strand, 7876721 - 7876857
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || |||    
T  7876721 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatccggagagtatccaaatatt 7876820  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       |||||||||||||| |||||||    
T  7876821 aaattttattttttaaaaaaataattatccgatactt 7876857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 371
Target Start/End: Complemental strand, 40309008 - 40308872
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| ||||||||||||||||  |||||||||||   | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || |||    
T  40309008 ccgatacttcaaaatagatgacgtaccgtatcccatgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatccggagagtatccaaatatt 40308909  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       |||||||||||||| |||||||    
T  40308908 aaattttatttttaaaaaaaataattatccgatactt 40308872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 406
Target Start/End: Complemental strand, 3545631 - 3545520
Alignment:
Q  296 gatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaa-aataattatctgatacttcctaatacgtatcaagagcgtat 394  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||||       |||| |||||||||| ||| |||||  |||| ||||||||| ||||    
T  3545631 gatacttctcgatatgtatcaggagagcatccgaagattaaattttattttaaaaaaataataattatcagatgcttcccgatacatatcaagagagtat 3545532  T
Q  395 ccgatcattatc 406  Q
    | ||| ||||||    
T  3545531 ctgataattatc 3545520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 14824216 - 14824319
Alignment:
Q  306 gatatgtatcagaagagtgtccgaagattaaatttta-nnnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcatta 404  Q
    |||| ||||||||||||| ||||||||||||||||||        |||||||||||||| |||| ||||  |||||||||| ||| ||||||||| ||||    
T  14824216 gatacgtatcagaagagtatccgaagattaaattttattttaaaaaaaaaataattatccgatatttcccgatacgtatcaggagagtatccgataatta 14824315  T
Q  405 tcct 408  Q
    ||||    
T  14824316 tcct 14824319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 412
Target Start/End: Original strand, 21104539 - 21104666
Alignment:
Q  285 gatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatc 384  Q
    |||||||| | |||| ||| ||||| |||||| | |||| ||||||||||||||| ||        ||||||||||||| |||| ||||  |||||||||    
T  21104539 gatatctgtctgatatttcccgatacgtatcaaaggagtatccgaagattaaattatactttttttaaaaataattatccgatatttccctatacgtatc 21104638  T
Q  385 aagagcgtatccgatcattatcctacac 412  Q
    | ||  ||||||||||||||||||||||    
T  21104639 aggaaagtatccgatcattatcctacac 21104666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 411
Target Start/End: Complemental strand, 31236236 - 31236121
Alignment:
Q  296 gatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatc 395  Q
    |||| ||| ||||| ||||||| ||||| ||||||||||||||||||       |||||||||| | | |||||||||  |||||||||| ||| |||||    
T  31236236 gatatttcccgatacgtatcaggagagtatccgaagattaaattttaattttttaaaaaataatcagccgatacttcccgatacgtatcaggagagtatc 31236137  T
Q  396 cgatcattatcctaca 411  Q
     ||| |||||||||||    
T  31236136 tgataattatcctaca 31236121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 408
Target Start/End: Original strand, 1005579 - 1005692
Alignment:
Q  295 cgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtat 394  Q
    ||||||||| ||||| |||| |||||||| || |||||||||||||||          |||||||||||||||||||||| ||||||||||  || ||||    
T  1005579 cgatacttcccgatacgtattagaagagtatctgaagattaaattttatttattttttaaataattatctgatacttcctgatacgtatcagaagagtat 1005678  T
Q  395 ccgatcattatcct 408  Q
    | ||| ||||||||    
T  1005679 ctgataattatcct 1005692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 342
Target Start/End: Complemental strand, 37134404 - 37134302
Alignment:
Q  241 acttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatt 339  Q
    ||||||||||||||||  |||||||||| |  | |||||| |||||||||||||  |||||||| ||||| ||||||  ||||| |  ||||||||||||    
T  37134404 acttcaaaatagatgacgtaccgtatcctctgcgtatcctgcactgatatctgcttgatacttcccgatacgtatcaagagagtatatgaagattaaatt 37134305  T
Q  340 tta 342  Q
    |||    
T  37134304 tta 37134302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 369
Target Start/End: Complemental strand, 4170613 - 4170479
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| ||||| |||||||| ||||| ||||| | ||||| ||| || |||    
T  4170613 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcctgatacttcccgatacgtatccggagagtatccaaatatt 4170514  T
Q  335 aaattttannnnnnnaaaaaataattatctgatac 369  Q
    ||||||||       |||||||||||||| |||||    
T  4170513 aaattttatttttaaaaaaaataattatccgatac 4170479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 369
Target Start/End: Original strand, 22484274 - 22484408
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||| |||||||| |||  | |||||| ||  |||||||| |||||||||| ||||| ||||| | ||||| ||| || |||    
T  22484274 ccgatacttcaaaatggatgatgtaccgtattccctgcgtatcctgcatcgatatctgtccgatacttcccgatacgtatccggagagtatccaaatatt 22484373  T
Q  335 aaattttannnnnnnaaaaaataattatctgatac 369  Q
    ||||||||       |||||||||||||| |||||    
T  22484374 aaattttatttttttaaaaaataattatccgatac 22484408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 408
Target Start/End: Complemental strand, 14217144 - 14217088
Alignment:
Q  352 aaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcct 408  Q
    |||||||||||| |||||||||  |||||||||| ||| ||||||||| ||||||||    
T  14217144 aaaataattatccgatacttcccgatacgtatcaggagagtatccgataattatcct 14217088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 1776477 - 1776440
Alignment:
Q  305 cgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  1776477 cgatacgtatcagaagagtatccgaagattaaatttta 1776440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 236 - 412
Target Start/End: Original strand, 32424928 - 32425105
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  |||||||||||   | |||||| ||| |||| ||| | |||||||| ||||| ||||||||||||| ||||||||||    
T  32424928 ccgatacttcaaaatggatgacgtaccgtatcccttgcgtatcctgcaccgatacctgtctgatacttcacgatacgtatcagaagagtatccgaagatt 32425027  T
Q  335 aaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcctacac 412  Q
    ||||||||       |||||||||||||| |||||||||  ||| |||||| ||| ||||||||||||||||||||||    
T  32425028 aaattttatttttaaaaaaaataattatccgatacttcccgatatgtatcaggagagtatccgatcattatcctacac 32425105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 369
Target Start/End: Original strand, 4245953 - 4246081
Alignment:
Q  242 cttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattt 340  Q
    |||||||||||||||  ||||||||||||  |||||||| ||| |||| |||||||||||||| ||||| ||||| ||||||| ||| || |||||||||    
T  4245953 cttcaaaatagatgacgtaccgtatcccctgcatatcctgcaccgatacctgcccgatacttcccgatacgtatccgaagagtatccaaatattaaattt 4246052  T
Q  341 tannnnnnnaaaaaataattatctgatac 369  Q
    ||       |||||||||||||| |||||    
T  4246053 tattttttaaaaaaataattatccgatac 4246081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 274 - 405
Target Start/End: Original strand, 37372305 - 37372437
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnna-aaaaataattatctgatacttc 372  Q
    |||||| |||||||| ||| | |||||||| ||||| ||||||| ||||| ||||||||||||||||||       | || |||||||||  ||||||||    
T  37372305 tatcctgcactgatacctgtctgatacttcccgatacgtatcaggagagtatccgaagattaaattttatttaaaaataataataattattcgatacttc 37372404  T
Q  373 ctaatacgtatcaagagcgtatccgatcattat 405  Q
    | ||||||||||| ||| ||||||||| |||||    
T  37372405 ccaatacgtatcaggagagtatccgataattat 37372437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 411
Target Start/End: Original strand, 20182418 - 20182556
Alignment:
Q  272 catatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatactt 371  Q
    |||||||| |||| ||||||| | ||||||| |||||| ||||||| ||||| || |||||||||||||||       |||||||||||| | |||||||    
T  20182418 catatcctgcact-atatctgtctgatacttttcgatacgtatcagtagagtatctgaagattaaattttaatttttaaaaaaataattaaccgatactt 20182516  T
Q  372 cctaatacgtatcaagagcgtatccgatcattatcctaca 411  Q
    ||  |||||||||||||  ||||| ||| ||||| |||||    
T  20182517 cccgatacgtatcaagaaagtatctgataattattctaca 20182556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 406
Target Start/End: Original strand, 27886258 - 27886368
Alignment:
Q  296 gatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatc 395  Q
    |||||||| ||||| ||||||| ||||| ||||||||||||| ||||       |||||||| ||||||||||||||  ||||| ||||| ||| |||||    
T  27886258 gatacttcccgatacgtatcaggagagtatccgaagattaaagtttatttttaaaaaaaatagttatctgatacttctcaatacatatcaggagagtatc 27886357  T
Q  396 cgatcattatc 406  Q
    |||| ||||||    
T  27886358 cgataattatc 27886368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 406
Target Start/End: Original strand, 27944916 - 27945026
Alignment:
Q  296 gatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatc 395  Q
    |||||||| ||||| ||||||| ||||| ||||||||||||| ||||       |||||||| ||||||||||||||  ||||| ||||| ||| |||||    
T  27944916 gatacttcccgatacgtatcaggagagtatccgaagattaaagtttatttttaaaaaaaatagttatctgatacttctcaatacatatcaggagagtatc 27945015  T
Q  396 cgatcattatc 406  Q
    |||| ||||||    
T  27945016 cgataattatc 27945026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 412
Target Start/End: Original strand, 38388713 - 38388851
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcc 373  Q
    |||||| ||| |||| ||| |||||||||||||||| || |||| | ||| ||||||||||||||||||       |||||| |||||||  ||||||||    
T  38388713 tatcctgcaccgatacctgtccgatacttctcgatacgtgtcaggaaagtatccgaagattaaattttatttttttaaaaaacaattatccaatacttcc 38388812  T
Q  374 taatacgtatcaagagcgtatccgatcattatcctacac 412  Q
    | |||| |||||  || |||| |||| ||||||||||||    
T  38388813 tgatacttatcagaagagtattcgataattatcctacac 38388851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 371
Target Start/End: Original strand, 16384624 - 16384760
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||    |||||| ||| |||| |||||||||||||| ||||| ||||| ||||||| ||| || |||    
T  16384624 ccgatacttcaaaatggatgacgtaccgtatcccctgagtatcctgcaccgatacctgcccgatacttcccgatacgtatccgaagagtatccaaatatt 16384723  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       |||||||||||||| |||||||    
T  16384724 aaattttattttttaaaaaaataattatccgatactt 16384760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 371
Target Start/End: Original strand, 32759385 - 32759516
Alignment:
Q  241 acttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatt 339  Q
    |||||||||| |||||  ||||||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || ||||||||    
T  32759385 acttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatctggagagtatccaaatattaaatt 32759484  T
Q  340 ttannnnnnnaaaaaataattatctgatactt 371  Q
    |||       |||||||||||||| |||||||    
T  32759485 ttatttttttaaaaaataattatccgatactt 32759516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 369
Target Start/End: Original strand, 36483442 - 36483576
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| |||||||||||||  ||||| ||||| ||||||| ||| || |||    
T  36483442 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatactttccgatacgtatccgaagagtatccaaatatt 36483541  T
Q  335 aaattttannnnnnnaaaaaataattatctgatac 369  Q
    ||||||||       |||||||||||||| |||||    
T  36483542 aaattttattttttaaaaaaataattatccgatac 36483576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 406
Target Start/End: Original strand, 27968147 - 27968283
Alignment:
Q  272 catatcctacactgatatctgcccgatacttctcgatatgtatcagaaga--gtgtccgaagattaaattttannnnnnnaaaaaataattatctgatac 369  Q
    |||||||| ||| |||| ||| | |||||||| ||||| ||||||| |||  || ||||||||||||| ||||       ||||||||||||||||||||    
T  27968147 catatcctgcaccgatacctggctgatacttcccgatacgtatcaggagatcgtatccgaagattaaagtttattttttaaaaaaataattatctgatac 27968246  T
Q  370 ttcctaatacgtatcaagagcgtatccgatcattatc 406  Q
    |||   |||| ||||| ||| ||||||||| ||||||    
T  27968247 ttctcgatacatatcaggagagtatccgataattatc 27968283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 406
Target Start/End: Original strand, 28025133 - 28025269
Alignment:
Q  272 catatcctacactgatatctgcccgatacttctcgatatgtatcagaaga--gtgtccgaagattaaattttannnnnnnaaaaaataattatctgatac 369  Q
    |||||||| ||| |||| ||| | |||||||| ||||| ||||||| |||  || ||||||||||||| ||||       ||||||||||||||||||||    
T  28025133 catatcctgcaccgatacctggctgatacttcccgatacgtatcaggagatcgtatccgaagattaaagtttattttttaaaaaaataattatctgatac 28025232  T
Q  370 ttcctaatacgtatcaagagcgtatccgatcattatc 406  Q
    |||   |||| ||||| ||| ||||||||| ||||||    
T  28025233 ttctcgatacatatcaggagagtatccgataattatc 28025269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 371
Target Start/End: Complemental strand, 12580664 - 12580528
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| ||||||||||||||||| ||||||||| ||  | |||||| ||| |||| ||| | |||||||| ||||| ||||| | ||||| ||| || |||    
T  12580664 ccgatacttcaaaatagatgatgtaccgtatctcctgcgtatcctgcaccgataactgtctgatacttcccgatacgtatccggagagtatccaaatatt 12580565  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       |||| |||||||||||||||||    
T  12580564 aaattttatttttttaaaatataattatctgatactt 12580528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 369
Target Start/End: Complemental strand, 5818383 - 5818288
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatac 369  Q
    |||||| ||| |||| ||||  |||| ||| ||||||||||||| ||||| || |||||||||||||||       ||||||||||||||||||||    
T  5818383 tatcctgcaccgatacctgcatgatatttcccgatatgtatcaggagagtatctgaagattaaattttatttttaaaaaaaataattatctgatac 5818288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 380
Target Start/End: Original strand, 32877444 - 32877589
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  || |||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || |||    
T  32877444 ccgatacttcaaaatggatgacgtatcgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatcgggagagtatccaaatatt 32877543  T
Q  335 aaattttannnnnnnaaaaaataattatctgatacttcctaatacg 380  Q
    ||||||||       ||||||||||| || ||||| |||| |||||    
T  32877544 aaattttattttttaaaaaaataattttccgatacatcctgatacg 32877589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 342
Target Start/End: Complemental strand, 2873021 - 2872914
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || ||     
T  2873021 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatccggagagtatccaaatatg 2872922  T
Q  335 aaatttta 342  Q
    ||||||||    
T  2872921 aaatttta 2872914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 408
Target Start/End: Original strand, 3892089 - 3892144
Alignment:
Q  353 aaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcct 408  Q
    ||||||||||||||||||||   |||||||||| ||| ||||||||| ||||||||    
T  3892089 aaataattatctgatacttctcgatacgtatcaggagagtatccgataattatcct 3892144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 342
Target Start/End: Original strand, 6028494 - 6028601
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| ||||||||||||||||||  |||||  |||| | ||||| ||| || |||    
T  6028494 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatatctgcccgatactttccgatacatatcgggagagtatccaaatatt 6028593  T
Q  335 aaatttta 342  Q
    ||||||||    
T  6028594 aaatttta 6028601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 411
Target Start/End: Original strand, 7411726 - 7411785
Alignment:
Q  352 aaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcctaca 411  Q
    |||||||||||| ||||||||   |||| ||||| ||| |||||||||||||||||||||    
T  7411726 aaaataattatccgatacttctcgatacatatcaggagagtatccgatcattatcctaca 7411785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 342
Target Start/End: Original strand, 13422215 - 13422322
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  |||||||| ||| |||| ||||| |||||||| ||||| ||||  | ||||| ||| || |||    
T  13422215 ccgatacttcaaaatggatgacgtaccgtatcccctgcatatcctgcaccgatacctgcctgatacttcccgatacgtatacggagagtatccaaatatt 13422314  T
Q  335 aaatttta 342  Q
    ||||||||    
T  13422315 aaatttta 13422322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 371
Target Start/End: Complemental strand, 22201448 - 22201312
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  || |||||||||  | |||||| ||| |||| |||||||||||||  ||||| ||||| | ||||| ||| || |||    
T  22201448 ccgatacttcaaaatggatgacgtatcgtatcccctgcgtatcctgcaccgatacctgcccgatactttccgatacgtatccggagagtatccaaatatt 22201349  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       |||||||||||||| |||||||    
T  22201348 aaattttatttttttaaaaaataattatccgatactt 22201312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 342
Target Start/End: Complemental strand, 28876677 - 28876570
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||| ||||||||  | |||||| ||| |||| |||||||||||||||||||| |||||   ||||| ||| || |||    
T  28876677 ccgatacttcaaaatggatgacgtactgtatcccctgcgtatcctgcaccgatacctgcccgatacttctcgatacgtatccagagagtatccaaatatt 28876578  T
Q  335 aaatttta 342  Q
    ||||||||    
T  28876577 aaatttta 28876570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 371
Target Start/End: Complemental strand, 34901493 - 34901357
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| |||||||||||||  ||||| ||||| | ||||| ||  || |||    
T  34901493 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatactttccgatacgtatccggagagtatctaaatatt 34901394  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       |||||||||||||| |||||||    
T  34901393 aaattttatttttttaaaaaataattatccgatactt 34901357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 32792 - 32825
Alignment:
Q  351 aaaaataattatctgatacttcctaatacgtatc 384  Q
    |||||||||||||||||||||||| |||||||||    
T  32792 aaaaataattatctgatacttcctgatacgtatc 32825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 24100234 - 24100197
Alignment:
Q  305 cgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  24100234 cgatatgtatcaggagagtatccgaagattaaatttta 24100197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 10349298 - 10349358
Alignment:
Q  282 actgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    |||||||| || | |||||||||||||| ||||||| | ||| || |||||||||||||||    
T  10349298 actgatatatgtctgatacttctcgatacgtatcaggaaagtatctgaagattaaatttta 10349358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 23265702 - 23265762
Alignment:
Q  281 cactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttt 341  Q
    |||||||||||| || ||| ||| ||||| ||||||| ||||| |||||||||||| ||||    
T  23265702 cactgatatctgtccaatatttcccgatacgtatcaggagagtatccgaagattaattttt 23265762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 274 - 406
Target Start/End: Complemental strand, 48715297 - 48715165
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcc 373  Q
    |||||||||| |||| | |||||||||||| ||||| ||||||| ||||||||||||||||||||||||       |||||||||||||| |||||||||    
T  48715297 tatcctacaccgataccggcccgatacttcccgatacgtatcaggagagtgtccgaagattaaattttattgttttaaaaaataattatcagatacttcc 48715198  T
Q  374 taatacgtatcaagagcgtatccgatcattatc 406  Q
      |||| ||||||||| ||||| ||| ||||||    
T  48715197 cgatacatatcaagagagtatctgataattatc 48715165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 294 - 412
Target Start/End: Original strand, 38218449 - 38218567
Alignment:
Q  294 ccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgta 393  Q
    ||||||||||| |||| ||||||||||||| ||||||||||||||||||       |||||||||||||  |||||||||  |||| ||| | ||| |||    
T  38218449 ccgatacttcttgatacgtatcagaagagtatccgaagattaaattttatttttttaaaaaataattattcgatacttcccgatacatattaggagagta 38218548  T
Q  394 tccgatcattatcctacac 412  Q
    |||||||||||||||||||    
T  38218549 tccgatcattatcctacac 38218567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 236 - 371
Target Start/End: Original strand, 1043234 - 1043370
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||| ||||||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || |||    
T  1043234 ccgatacttcaaaatggatgatgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatccggagagtatccaaatatt 1043333  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       ||||||||||||||||||||||    
T  1043334 aaattttatttttaaaaaaaataattatctgatactt 1043370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 412
Target Start/End: Complemental strand, 24590142 - 24590058
Alignment:
Q  328 gaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcctacac 412  Q
    |||||||||||||||       ||||||||||||||||||||||||  |||| ||||||||| ||||||||||||||||||||||    
T  24590142 gaagattaaattttatttttttaaaaaataattatctgatacttcccgatacatatcaagagagtatccgatcattatcctacac 24590058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 412
Target Start/End: Complemental strand, 41676050 - 41675923
Alignment:
Q  285 gatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatc 384  Q
    |||| ||| ||||||||||   ||||||||  ||||||| ||||||||||||||||||       ||||||||||||||  ||||||||  |||| ||||    
T  41676050 gatacctgtccgatacttcctaatatgtattggaagagtatccgaagattaaattttatttttttaaaaaataattatccaatacttcccgatacttatc 41675951  T
Q  385 aagagcgtatccgatcattatcctacac 412  Q
    | ||| ||||||||||||||||||||||    
T  41675950 aggagagtatccgatcattatcctacac 41675923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 341
Target Start/End: Original strand, 43189662 - 43189768
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||| ||||||||||||  | |||||| ||| |||| |||||||||||||||||||| ||||||| ||||| ||| || |||    
T  43189662 ccgatacttcaaaatggatgatgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatacttctcgatacgtatcaggagagtatccaaatatt 43189761  T
Q  335 aaatttt 341  Q
    |||||||    
T  43189762 aaatttt 43189768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 408
Target Start/End: Original strand, 9781675 - 9781822
Alignment:
Q  261 cgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataatt 360  Q
    |||||||||  | |||||| ||| |||| |||||||||||||  ||||| ||||||||||||| |||||||||||| ||||          |||||||||    
T  9781675 cgtatcccctgcgtatcctgcaccgatacctgcccgatactttccgatacgtatcagaagagtatccgaagattaatttttttttttttttaaaataatt 9781774  T
Q  361 atctgatacttcctaatacgtatcaagagcgtatccgatcattatcct 408  Q
    ||| |||||||||  |||||||||| ||  ||||||||| ||||||||    
T  9781775 atccgatacttcccgatacgtatcaggaaagtatccgataattatcct 9781822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 371
Target Start/End: Original strand, 1036471 - 1036602
Alignment:
Q  241 acttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatt 339  Q
    |||||||||| |||||  ||||||||||||  | |||||| ||| |||| |||||||||||||  ||||| ||||| | ||||| ||| || ||||||||    
T  1036471 acttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatactttccgatacgtatccggagagtatccaaatattaaatt 1036570  T
Q  340 ttannnnnnnaaaaaataattatctgatactt 371  Q
    |||       ||||||||||||||||||||||    
T  1036571 ttattttttaaaaaaataattatctgatactt 1036602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 342
Target Start/End: Original strand, 14167096 - 14167198
Alignment:
Q  241 acttcaaaatagatga-ttaccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatt 339  Q
    |||||||||| ||||| ||| |||||| ||  | |||||| ||| |||||||| | ||||||||  |||| ||||||||||||| |||||||||||||||    
T  14167096 acttcaaaatggatgacttatcgtatcacctgcgtatcctgcaccgatatctgtctgatacttcctgatacgtatcagaagagtatccgaagattaaatt 14167195  T
Q  340 tta 342  Q
    |||    
T  14167196 tta 14167198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 369
Target Start/End: Complemental strand, 20409665 - 20409531
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || |||    
T  20409665 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatccggagagtatccaaatatt 20409566  T
Q  335 aaattttannnnnnnaaaaaataattatctgatac 369  Q
    ||||||||       |||||||||||||| |||||    
T  20409565 aaattttatttttttaaaaaataattatccgatac 20409531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 30323761 - 30323829
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    |||||| ||||||||||||||||||||||| ||||| ||||| | ||||| ||| || |||||||||||    
T  30323761 tatcctgcactgatatctgcccgatacttcccgatacgtatctggagagtatccaaatattaaatttta 30323829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 342
Target Start/End: Original strand, 38948762 - 38948846
Alignment:
Q  258 taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    ||||||||||||  | |||||| ||| ||||||||||| ||||||||||||| ||||| ||||| | ||| || |||||||||||    
T  38948762 taccgtatcccctgcgtatcctgcaccgatatctgcccaatacttctcgatacgtatccgaagaatatccaaatattaaatttta 38948846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 371
Target Start/End: Complemental strand, 28949352 - 28949216
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| ||||||||||||||  |||| ||||| | ||||| ||| || |||    
T  28949352 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatacttcctgatacgtatccggagagtatccaaatatt 28949253  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       |||||||||||||| |||||||    
T  28949252 aaattttatttttttaaaaaataattatccgatactt 28949216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 2364734 - 2364791
Alignment:
Q  285 gatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    |||| |||||| ||||||  ||||| ||||||||||||| ||||||||||||||||||    
T  2364734 gatacctgcccaatactttccgatacgtatcagaagagtatccgaagattaaatttta 2364791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 369
Target Start/End: Complemental strand, 32381170 - 32381036
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||| ||||| |||||| ||||||||||||  |||||| | |||  |||| || | |||||||| | ||| ||||||| ||||| ||||||||||    
T  32381170 ccgatactttaaaatggatgatataccgtatcccctgcatatcatgcaccaatatttgtctgatacttcccaatacgtatcaggagagtatccgaagatt 32381071  T
Q  335 aaattttannnnnnnaaaaaataattatctgatac 369  Q
    ||||||||       |||||||||||||| |||||    
T  32381070 aaattttatttttttaaaaaataattatccgatac 32381036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 342
Target Start/End: Complemental strand, 34432448 - 34432387
Alignment:
Q  281 cactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    ||||| |||||||| ||||||||  |||| ||||||| ||||| ||||||||||||||||||    
T  34432448 cactggtatctgcctgatacttcctgatacgtatcaggagagtatccgaagattaaatttta 34432387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 40776053 - 40776109
Alignment:
Q  286 atatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    ||||||||  |||||||||||||| |||||||  |||| ||||||||||||||||||    
T  40776053 atatctgcatgatacttctcgatacgtatcaggcgagtatccgaagattaaatttta 40776109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 371
Target Start/End: Complemental strand, 6916985 - 6916849
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| |||||||||||||  ||||| ||||| | ||||| ||  || |||    
T  6916985 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatactttccgatacgtatccggagagtatctaaatatt 6916886  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       |||||||||||||| |||||||    
T  6916885 aaattttatttttttaaaaaataattatccgatactt 6916849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 9528838 - 9528775
Alignment:
Q  351 aaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcctacacag 414  Q
    |||||||||||||||||||||||  |||||||| | ||| ||||||||| ||||| || |||||    
T  9528838 aaaaataattatctgatacttcccgatacgtattaggagagtatccgataattattctgcacag 9528775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 341
Target Start/End: Original strand, 10763717 - 10763772
Alignment:
Q  286 atatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttt 341  Q
    |||||||||||||| || | |||| ||||||||||||| |||||||||||| ||||    
T  10763717 atatctgcccgatattttttgatacgtatcagaagagtatccgaagattaattttt 10763772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 371
Target Start/End: Original strand, 37104127 - 37104263
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  || |||||||||  | |||||| ||| |||| ||||||||||||||  |||| ||||| | ||||| ||| || |||    
T  37104127 ccgatacttcaaaatggatgacgtatcgtatcccctgcgtatcctgcaccgatacctgcccgatacttcctgatacgtatccggagagtatccaaatatt 37104226  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       |||||||||||||| |||||||    
T  37104227 aaattttattttttaaaaaaataattatccgatactt 37104263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 342
Target Start/End: Complemental strand, 37346959 - 37346852
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| |  |||| ||| || |||    
T  37346959 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatcgggggagtatccaaatatt 37346860  T
Q  335 aaatttta 342  Q
    ||||||||    
T  37346859 aaatttta 37346852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 371
Target Start/End: Original strand, 38330434 - 38330570
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| |||||||||||||  ||||| ||||| | ||||| ||  || |||    
T  38330434 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatactttccgatacgtatccggagagtatctaaatatt 38330533  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       |||||||||||||| |||||||    
T  38330534 aaattttatttttttaaaaaataattatccgatactt 38330570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 371
Target Start/End: Complemental strand, 52895824 - 52895688
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| |||||||||||||  ||||| ||||| | ||||| ||  || |||    
T  52895824 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatactttccgatacgtatccggagagtatctaaatatt 52895725  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       |||||||||||||| |||||||    
T  52895724 aaattttatttttttaaaaaataattatccgatactt 52895688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 341
Target Start/End: Complemental strand, 3708390 - 3708284
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  || ||||||| |  ||||||||||||  |||  |||||||||||| |||||| ||||||| ||||| | |||| |||    
T  3708390 ccgatacttcaaaatggatgacgtatcgtatcctctgcatatcctacaccaatacatgcccgatacttttcgatacgtatcaggagagtattcgaatatt 3708291  T
Q  335 aaatttt 341  Q
    |||||||    
T  3708290 aaatttt 3708284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 406
Target Start/End: Original strand, 24851565 - 24851652
Alignment:
Q  319 agagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatc 406  Q
    ||||| ||| ||||||||||||||       |||||||||||||| |||||||||  ||||| |||| ||| ||||||||| ||||||    
T  24851565 agagtatccaaagattaaattttatttttttaaaaaataattatccgatacttcccgatacgcatcaggagagtatccgataattatc 24851652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 369
Target Start/End: Original strand, 8132190 - 8132324
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| ||||||||||||||||  ||||||||||||  | |||||| ||| ||||  ||  ||||||||| ||||| ||||| | ||||| ||| || |||    
T  8132190 ccgatacttcaaaatagatgacgtaccgtatcccctgcgtatcctgcaccgatacatgttcgatacttcccgatacgtatccggagagtatccaaatatt 8132289  T
Q  335 aaattttannnnnnnaaaaaataattatctgatac 369  Q
    ||||||||       |||||||||||||| |||||    
T  8132290 aaattttatttttttaaaaaataattatccgatac 8132324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 342
Target Start/End: Complemental strand, 13013057 - 13012996
Alignment:
Q  281 cactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    |||||||| |||||||||||||| ||||| ||||| | ||||| ||| || |||||||||||    
T  13013057 cactgatacctgcccgatacttcccgatacgtatcgggagagtatccaaatattaaatttta 13012996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 342
Target Start/End: Complemental strand, 31653463 - 31653406
Alignment:
Q  285 gatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    ||||||||||||||||||| ||||| ||||| | ||||| ||| || |||||||||||    
T  31653463 gatatctgcccgatacttcccgatacgtatcgggagagtatccaaatattaaatttta 31653406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 29861863 - 29861907
Alignment:
Q  290 ctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||||||||||||  ||||| ||||||||||||| ||||||||||    
T  29861863 ctgcccgatactttccgatacgtatcagaagagtatccgaagatt 29861907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 406
Target Start/End: Original strand, 33039734 - 33039790
Alignment:
Q  350 aaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattatc 406  Q
    |||||||||||||| |||||||||  |||||||| | ||| ||||||||| ||||||    
T  33039734 aaaaaataattatccgatacttcccgatacgtatgaggagagtatccgataattatc 33039790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 236 - 371
Target Start/End: Complemental strand, 8203 - 8067
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||| ||||||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || |||    
T  8203 ccgatacttcaaaatggatgatgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatccggagagtatccaaatatt 8104  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       ||||||||||||||||||||||    
T  8103 aaattttatttttaaaaaaaataattatctgatactt 8067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 292 - 408
Target Start/End: Original strand, 19128217 - 19128333
Alignment:
Q  292 gcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcg 391  Q
    |||||||||||  ||||| ||||||||||||| ||||||||||||||||||        ||||||||||||| |||||||||  |||||||||| ||  |    
T  19128217 gcccgatactttccgatacgtatcagaagagtatccgaagattaaattttattttttttaaaaataattatccgatacttcccgatacgtatcaggaaag 19128316  T
Q  392 tatccgatcattatcct 408  Q
    |||||||| ||||||||    
T  19128317 tatccgataattatcct 19128333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 411
Target Start/End: Original strand, 11105364 - 11105469
Alignment:
Q  306 gatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcctaatacgtatcaagagcgtatccgatcattat 405  Q
    |||| ||||||||||| | | ||||||||||||||||       |||||||||||||  |||||||||  |||| |||||| || |||||||||||||||    
T  11105364 gatacgtatcagaagaatattcgaagattaaattttatttttttaaaaaataattattcgatacttccgtatacatatcaaaagagtatccgatcattat 11105463  T
Q  406 cctaca 411  Q
    ||||||    
T  11105464 cctaca 11105469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 399
Target Start/End: Original strand, 7254997 - 7255092
Alignment:
Q  305 cgatatgtatcagaagagtgtccgaagattaaattttannnnnnna-aaaaataattatctgatacttcctaatacgtatcaagagcgtatccgat 399  Q
    ||||| ||||||||||||| ||||||||||||||||||       | || ||||||||||||||||||||  |||||||||| ||| |||||||||    
T  7254997 cgatacgtatcagaagagtatccgaagattaaattttatttaaaaataataataattatctgatacttcccgatacgtatcaggagagtatccgat 7255092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 371
Target Start/End: Original strand, 8356970 - 8357101
Alignment:
Q  241 acttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatt 339  Q
    |||||||||| |||||  ||||||||||||  | |||||| ||| |||| ||| |||||||||| ||||| ||||| ||||||| ||| || ||||||||    
T  8356970 acttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgtccgatacttcccgatacgtatccgaagagtatccaaatattaaatt 8357069  T
Q  340 ttannnnnnnaaaaaataattatctgatactt 371  Q
    |||       |||||||||||||| |||||||    
T  8357070 ttattttttaaaaaaataattatccgatactt 8357101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 373
Target Start/End: Original strand, 26327201 - 26327299
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcc 373  Q
    |||||| ||| |||| |||||||||||||| ||||| |||| || ||||| ||||||||||||||||||       |||||||||||||| |||||||||    
T  26327201 tatcctgcaccgatacctgcccgatacttcccgatacgtataag-agagtatccgaagattaaattttatttttaaaaaaaataattatccgatacttcc 26327299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 406
Target Start/End: Original strand, 31079667 - 31079780
Alignment:
Q  294 ccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnna-aaaaataattatctgatacttcctaatacgtatcaagagcgt 392  Q
    |||||||||||||||| ||||||| | ||| ||  ||||||||||||||         |||||||||||||||||||||||  |||||||||| ||| ||    
T  31079667 ccgatacttctcgataagtatcaggatagtatcttaagattaaattttattttattttaaaaataattatctgatacttcccgatacgtatcaggagagt 31079766  T
Q  393 atccgatcattatc 406  Q
    ||||||| ||||||    
T  31079767 atccgatgattatc 31079780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 234352 - 234419
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttt 341  Q
    |||||| ||| |||| |||||||||||||  ||||| ||||||||||||| |||||||||||| ||||    
T  234352 tatcctgcaccgatacctgcccgatactttccgatacgtatcagaagagtatccgaagattaactttt 234419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 371
Target Start/End: Complemental strand, 31195975 - 31195844
Alignment:
Q  241 acttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatt 339  Q
    |||||||||| |||||  || |||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || ||||||||    
T  31195975 acttcaaaatggatgacgtatcgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatctggagagtatccaaatattaaatt 31195876  T
Q  340 ttannnnnnnaaaaaataattatctgatactt 371  Q
    |||       |||||||||||||| |||||||    
T  31195875 ttattttttaaaaaaataattatccgatactt 31195844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 3212523 - 3212591
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    |||||| ||| ||||||||||||||||||| ||||| ||||| | ||||| ||| || |||||||||||    
T  3212523 tatcctgcaccgatatctgcccgatacttcccgatacgtatccggagagtatccaaatattaaatttta 3212591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 10894509 - 10894457
Alignment:
Q  356 taattatctgatacttcctaatacgtatcaagagcgtatccgatcattatcct 408  Q
    |||||||  ||||||||||||||||||||| ||| ||||||||| ||||||||    
T  10894509 taattattcgatacttcctaatacgtatcaggagagtatccgataattatcct 10894457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 371
Target Start/End: Complemental strand, 1036937 - 1036801
Alignment:
Q  236 ccgaaacttcaaaatagatgat-taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatt 334  Q
    |||| |||||||||| |||||  ||||||||||||  | |||||| ||| |||| |||||||||||||  ||||| ||||| | ||||| ||  || |||    
T  1036937 ccgatacttcaaaatggatgacgtaccgtatcccctgcgtatcctgcaccgatacctgcccgatactttccgatacgtatccggagagtatctaaatatt 1036838  T
Q  335 aaattttannnnnnnaaaaaataattatctgatactt 371  Q
    ||||||||       |||||||||||||| |||||||    
T  1036837 aaattttatttttttaaaaaataattatccgatactt 1036801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 373
Target Start/End: Complemental strand, 6708080 - 6708014
Alignment:
Q  307 atatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatacttcc 373  Q
    ||||||||||| ||||| |||||||||||||| |||       |||||||||||||| |||||||||    
T  6708080 atatgtatcaggagagtatccgaagattaaatattattttaaaaaaaaataattatccgatacttcc 6708014  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 369
Target Start/End: Complemental strand, 7188887 - 7188756
Alignment:
Q  236 ccgaaacttcaaaatagatgattaccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagatta 335  Q
    |||| |||||||||| ||||  ||||||||||||  | |||||| ||| |||| ||||| ||||||||  |||| ||||| | ||||| ||| || ||||    
T  7188887 ccgatacttcaaaatggatg--taccgtatcccctgcgtatcctgcaccgatacctgcctgatacttcctgatacgtatccggagagtatccaaatatta 7188790  T
Q  336 aattttannnnnnnaaaaaataattatctgatac 369  Q
    |||||||       |||||||||||||| |||||    
T  7188789 aattttatttttaaaaaaaataattatccgatac 7188756  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 342
Target Start/End: Complemental strand, 32130747 - 32130663
Alignment:
Q  258 taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    ||||||||||||  | |||||| |||||||| |||  ||||| ||| ||||| ||||||| ||||| ||| || |||||||||||    
T  32130747 taccgtatcccctgcgtatcctgcactgatacctgttcgatatttcccgatacgtatcaggagagtatccaaatattaaatttta 32130663  T

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Target: scaffold0250 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 342
Target Start/End: Original strand, 5542 - 5626
Alignment:
Q  258 taccgtatccccaacatatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaatttta 342  Q
    ||||||||||||  | |||||| ||| |||| |||||||||||||| ||||| ||||| | ||||| ||| || |||||||||||    
T  5542 taccgtatcccctgcgtatcctgcaccgatacctgcccgatacttcccgatacgtatcgggagagtatccaaatattaaatttta 5626  T

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Target: scaffold0060 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 371
Target Start/End: Complemental strand, 30516 - 30419
Alignment:
Q  274 tatcctacactgatatctgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaattttannnnnnnaaaaaataattatctgatactt 371  Q
    |||||||||| |||| ||||||||||||||  |||| ||||| | ||||| ||| || |||||||||||       |||||||||||||| |||||||    
T  30516 tatcctacaccgatacctgcccgatacttcctgatacgtatccggagagtatccaaatattaaattttattttaaaaaaaaataattatccgatactt 30419  T

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Target: scaffold0240 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 10663 - 10710
Alignment:
Q  291 tgcccgatacttctcgatatgtatcagaagagtgtccgaagattaaat 338  Q
    ||||||||||||||||||| ||||||| ||||| || |||||||||||    
T  10663 tgcccgatacttctcgatacgtatcaggagagtatcagaagattaaat 10710  T

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