View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12382_high_6 (Length: 378)
Name: NF12382_high_6
Description: NF12382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12382_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 361
Target Start/End: Complemental strand, 50821992 - 50821646
Alignment:
| Q |
15 |
ctgtgtaaaacgattaggtattcaccatcttattttgccttcactacgcacaaggttggctatgtgggagcattttgggttcaagccaatacaagatgat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50821992 |
ctgtgtaaaacgattaggtattcaccatcttattttgccttcactacgcacaaggttggctatgtgggagcattttgggttctagccaatacaagatgat |
50821893 |
T |
|
| Q |
115 |
gatctgaattttcttctccaaggtaacaaccttgacatcatagagaattttgatagaaccacattgtgtctcaaaacactgagcagtgaatatgatgatg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
50821892 |
gatctgaattttcttctccaaggtaacaaccttgacatcatagagaattttgatagaaacacattgtgtctcaaaacactgagcagtgaatatgatgatg |
50821793 |
T |
|
| Q |
215 |
acgtttaggattcagtttacagtttttgttaaaaagggtagaaatgataatgctactgatattgctctagttgtctaggctttggatattgtgctagttt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50821792 |
acgtttaggattcagtttacagtttttgttaaaaagggtagaaatgataatgctactgatattgctctagttgtctaggctttggatattgtgctagttt |
50821693 |
T |
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| Q |
315 |
cctgttatttcactctctattttcctgttatcctttttgtggtagtt |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50821692 |
cctgttatttcactctctattttcctgttatcctttttgtggtagtt |
50821646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 361
Target Start/End: Original strand, 50853869 - 50854215
Alignment:
| Q |
15 |
ctgtgtaaaacgattaggtattcaccatcttattttgccttcactacgcacaaggttggctatgtgggagcattttgggttcaagccaatacaagatgat |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50853869 |
ctgtgtaaaacgattaggtattcaccatcttattttgccttcactacgcacaaggttggctatgtgggagcattttgggttctagccaatacaagatgat |
50853968 |
T |
|
| Q |
115 |
gatctgaattttcttctccaaggtaacaaccttgacatcatagagaattttgatagaaccacattgtgtctcaaaacactgagcagtgaatatgatgatg |
214 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
50853969 |
gatctgaattttcttctccaaggtaacaaccttgacatcatagagaattttgatagaaacacattgtgtctcaaaacactgagcagtgaatatgatgatg |
50854068 |
T |
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| Q |
215 |
acgtttaggattcagtttacagtttttgttaaaaagggtagaaatgataatgctactgatattgctctagttgtctaggctttggatattgtgctagttt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50854069 |
acgtttaggattcagtttacagtttttgttaaaaagggtagaaatgataatgctactgatattgctctagttgtctaggctttggatattgtgctagttt |
50854168 |
T |
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| Q |
315 |
cctgttatttcactctctattttcctgttatcctttttgtggtagtt |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50854169 |
cctgttatttcactctctattttcctgttatcctttttgtggtagtt |
50854215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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