View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12382_low_3 (Length: 503)

Name: NF12382_low_3
Description: NF12382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12382_low_3
NF12382_low_3
[»] scaffold0004 (2 HSPs)
scaffold0004 (88-485)||(90318-90702)
scaffold0004 (21-68)||(90273-90320)
[»] scaffold0036 (1 HSPs)
scaffold0036 (327-462)||(28646-28781)
[»] chr1 (5 HSPs)
chr1 (418-484)||(10683551-10683617)
chr1 (411-472)||(9331969-9332030)
chr1 (395-462)||(16572714-16572781)
chr1 (128-217)||(38761095-38761186)
chr1 (391-435)||(18350404-18350448)
[»] chr3 (3 HSPs)
chr3 (411-472)||(29858294-29858356)
chr3 (401-472)||(18680416-18680488)
chr3 (147-203)||(30813393-30813449)
[»] chr2 (3 HSPs)
chr2 (374-485)||(18682273-18682385)
chr2 (374-448)||(22114812-22114886)
chr2 (351-407)||(19005866-19005922)
[»] chr8 (1 HSPs)
chr8 (165-220)||(13476800-13476857)
[»] chr7 (1 HSPs)
chr7 (138-188)||(33446956-33447006)
[»] chr4 (2 HSPs)
chr4 (401-466)||(24761924-24761989)
chr4 (401-472)||(5750378-5750450)
[»] chr6 (1 HSPs)
chr6 (395-462)||(32854952-32855019)
[»] chr5 (1 HSPs)
chr5 (155-206)||(7510054-7510105)


Alignment Details
Target: scaffold0004 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 88 - 485
Target Start/End: Original strand, 90318 - 90702
Alignment:
Q  88 aataattgataaaagatgggttgattttgaaaccattaagctatgtataaattgatggaatgtgatagaatagaatggtaactaattatgttccattgtt 187  Q
    |||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||          ||||| |||||||||||| ||||||||||    
T  90318 aataattgataaaagatgggttgattttgaaaccattaagctatatttgaattgatggaat----------agaatagtaactaattatattccattgtt 90407  T
Q  188 tagatttgttaaaaatgaagagtggaatggtacggaatataactaattatgctctaagcaatgtagtaagttaccttagcatagggatcatacatagata 287  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||    || ||||||||||||||||    
T  90408 tagatttgttaaaaatgaagagtggaatggtacgtaatagaactaattatgctctaagaaatgtagtaagttaccttc---taaggatcatacatagata 90504  T
Q  288 agtcattggtcttatttctatttatagtctaattagatccaattagggcttatttgtgcgtatgggtctaaaatcattacgttcggaacaattgaaatct 387  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  90505 agtcattggtcttatttctatttatagtctaattagatacaattagggcttatttgtgcgtatgggtctaaaattattacgttcggaacaattgaaattt 90604  T
Q  388 ttttaagacttgaatcataactcaataaagaaattgcattaataaatttcaacaaataaacataggttcatcttaaaactttaataagagagtgttta 485  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  90605 ttttaagacttaaatcataactcaataaagaaattgcattaataaattccaacaaataaacataggttcatcttagaactttaataagagagtgttta 90702  T

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Target: scaffold0004; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 90273 - 90320
Alignment:
Q  21 ggtgattagaattcttcgaatctcctcggtcttctttatcagattaat 68  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  90273 ggtgattaggattcttcgaatctcctcggtcttctttgtcagattaat 90320  T

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Target: scaffold0036 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 327 - 462
Target Start/End: Original strand, 28646 - 28781
Alignment:
Q  327 caattagggcttatttgtgcgtatgggtctaaaatcattacgttcggaacaattgaaatctttttaagacttgaatcataactcaataaagaaattgcat 426  Q
    ||||||| |||||||||||| |  |||||||||| |||||| ||  ||||||||||||  | | ||||| || |||||||| | ||||||||||||||||    
T  28646 caattagagcttatttgtgccttggggtctaaaagcattacatttagaacaattgaaaattatataagatttaaatcataaatgaataaagaaattgcat 28745  T
Q  427 taataaatttcaacaaataaacataggttcatctta 462  Q
    ||||| |||| | |||||||| | ||||||||||||    
T  28746 taatagattttaccaaataaataaaggttcatctta 28781  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 418 - 484
Target Start/End: Complemental strand, 10683617 - 10683551
Alignment:
Q  418 aaattgcattaataaatttcaacaaataaacataggttcatcttaaaactttaataagagagtgttt 484  Q
    |||||||||||||||||| ||||||||||||| |||||||||||| ||| ||||| |||| ||||||    
T  10683617 aaattgcattaataaattccaacaaataaacaaaggttcatcttagaaccttaatcagagggtgttt 10683551  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 472
Target Start/End: Complemental strand, 9332030 - 9331969
Alignment:
Q  411 aataaagaaattgcattaataaatttcaacaaataaacataggttcatcttaaaactttaat 472  Q
    ||||||||||||||||||| |||||  |||||||||||| |||||||||||| |||| ||||    
T  9332030 aataaagaaattgcattaaaaaattgtaacaaataaacagaggttcatcttagaactctaat 9331969  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 462
Target Start/End: Original strand, 16572714 - 16572781
Alignment:
Q  395 acttgaatcataactcaataaagaaattgcattaataaatttcaacaaataaacataggttcatctta 462  Q
    |||| |||||||||| |||||||||||| ||||||| ||||  |||||||||||| || |||||||||    
T  16572714 acttaaatcataactgaataaagaaattacattaatgaattcgaacaaataaacaaagtttcatctta 16572781  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 38761186 - 38761095
Alignment:
Q  128 ctatgtataaattgatggaatgtgatagaatagaatggtaactaattatgttccattgtttagatttgttaaaaatgaa--gagtggaatgg 217  Q
    |||||| | |||||||||| || |||  |||| | |||||| ||||||| ||| ||||||| |||||||||||||||||  |||||||||||    
T  38761186 ctatgtttgaattgatggagtgggatgaaataaagtggtaattaattatattctattgtttggatttgttaaaaatgaatggagtggaatgg 38761095  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 18350448 - 18350404
Alignment:
Q  391 taagacttgaatcataactcaataaagaaattgcattaataaatt 435  Q
    |||||||| ||| |||| | |||||||||||||||||||||||||    
T  18350448 taagacttaaataataagtgaataaagaaattgcattaataaatt 18350404  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 411 - 472
Target Start/End: Original strand, 29858294 - 29858356
Alignment:
Q  411 aataaagaaattgcattaataaatttcaacaaataaacat-aggttcatcttaaaactttaat 472  Q
    ||||| |||||||||||||||||||||||||||||||||| |  |||||||||||||| ||||    
T  29858294 aataatgaaattgcattaataaatttcaacaaataaacataaatttcatcttaaaactctaat 29858356  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 472
Target Start/End: Original strand, 18680416 - 18680488
Alignment:
Q  401 atcataactcaataaagaaattgcattaataaa-tttcaacaaataaacataggttcatcttaaaactttaat 472  Q
    ||||||||| |||||| |||||||||||||||| ||| |||||||||| | |||| ||||||| |||| ||||    
T  18680416 atcataactaaataaataaattgcattaataaatttttaacaaataaatagaggtacatcttagaactctaat 18680488  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 30813449 - 30813393
Alignment:
Q  147 atgtgatagaatagaatggtaactaattatgttccattgtttagatttgttaaaaat 203  Q
    ||||||| |||| || |||||  ||||||| ||||||||||||||||||| ||||||    
T  30813449 atgtgatggaatggagtggtacataattatattccattgtttagatttgtaaaaaat 30813393  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 485
Target Start/End: Original strand, 18682273 - 18682385
Alignment:
Q  374 aacaattgaaatctttttaagacttgaatcataactcaataaa-gaaattgcattaataaatttcaacaaataaacataggttcatcttaaaactttaat 472  Q
    |||||||||||  | | |||||||| |||||||| | || ||| | |||||||||||||| ||| |||||||||||| |||||||||||| |||  ||||    
T  18682273 aacaattgaaaaatatataagacttaaatcataattgaacaaatgtaattgcattaataacttttaacaaataaacaaaggttcatcttagaaccctaat 18682372  T
Q  473 aagagagtgttta 485  Q
     |||| |||||||    
T  18682373 tagagggtgttta 18682385  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 448
Target Start/End: Original strand, 22114812 - 22114886
Alignment:
Q  374 aacaattgaaatctttttaagacttgaatcataactcaataaagaaattgcattaataaatttcaacaaataaac 448  Q
    |||||||||||  | | ||||| || |||||||| | |||||||||||| ||||||||||||  |||||||||||    
T  22114812 aacaattgaaaattatataagagttaaatcataattaaataaagaaatttcattaataaattcaaacaaataaac 22114886  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 407
Target Start/End: Original strand, 19005866 - 19005922
Alignment:
Q  351 gggtctaaaatcattacgttcggaacaattgaaatctttttaagacttgaatcataa 407  Q
    |||||||||| |||||| |||| || |||||||| || | |||||||||||||||||    
T  19005866 gggtctaaaagcattacattcgaaataattgaaaactatgtaagacttgaatcataa 19005922  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 13476800 - 13476857
Alignment:
Q  165 gtaactaattatgttccattgtttagatttgttaaaaatgaa--gagtggaatggtac 220  Q
    |||| |||||||||| |||||||| |||||||||||||||||  ||||||||||||||    
T  13476800 gtaattaattatgtttcattgtttggatttgttaaaaatgaatggagtggaatggtac 13476857  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 33446956 - 33447006
Alignment:
Q  138 attgatggaatgtgatagaatagaatggtaactaattatgttccattgttt 188  Q
    |||||||| ||||||| |||| || ||||||||||||||||||||||||||    
T  33446956 attgatggtatgtgatggaatggagtggtaactaattatgttccattgttt 33447006  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 466
Target Start/End: Complemental strand, 24761989 - 24761924
Alignment:
Q  401 atcataactcaataaagaaattgcattaataaatttcaacaaataaacataggttcatcttaaaac 466  Q
    ||||||| | |||||||||| ||||||||||||||  ||||||||||   ||||||||||||||||    
T  24761989 atcataattgaataaagaaactgcattaataaattctaacaaataaatggaggttcatcttaaaac 24761924  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 472
Target Start/End: Original strand, 5750378 - 5750450
Alignment:
Q  401 atcataactcaataaagaaattgcattaataaa-tttcaacaaataaacataggttcatcttaaaactttaat 472  Q
    ||||||||| |||||| |||||||||||||||| ||| |||||||||| | |||| ||||||| |||| ||||    
T  5750378 atcataactaaataaataaattgcattaataaatttttaacaaataaatagaggtacatcttagaactctaat 5750450  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 462
Target Start/End: Complemental strand, 32855019 - 32854952
Alignment:
Q  395 acttgaatcataactcaataaagaaattgcattaataaatttcaacaaataaacataggttcatctta 462  Q
    |||| |||||||||| |||||| || ||||||||||||| | ||| ||||||| | ||||||||||||    
T  32855019 acttaaatcataactgaataaacaacttgcattaataaaatccaataaataaataaaggttcatctta 32854952  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 7510105 - 7510054
Alignment:
Q  155 gaatagaatggtaactaattatgttccattgtttagatttgttaaaaatgaa 206  Q
    |||| ||||||||||||||||||||||||| |||  |||| |||||||||||    
T  7510105 gaatggaatggtaactaattatgttccattatttgaatttattaaaaatgaa 7510054  T

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