View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12382_low_4 (Length: 465)
Name: NF12382_low_4
Description: NF12382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12382_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Complemental strand, 11589448 - 11589012
Alignment:
| Q |
11 |
cacagaggcatcagctgggcctttgaaatagcctaaacatccttcaataagtcttctgtacccttgctctggagcaatcagatggggctgataaccatcg |
110 |
Q |
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| T |
11589448 |
cacagaggcatcagctgggcctttgaaatagcctaaacatccttcaataagtcttctgtacccttgctctggagcaatcagatggggctgataaccatcg |
11589349 |
T |
|
| Q |
111 |
gcttctgtaacgactctctggacattttttatggaaagatgacgatcaaaggggagctttttcaaagcagccggtaattgattgtcaaaaacaccataaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11589348 |
gcttctgtaacgactctctggacattttttatggaaagatgacgatcaaaggggagctttttcaaagcagccggtaattgattgtcaaaaacaccataaa |
11589249 |
T |
|
| Q |
211 |
ttttgtccccacctggacgtctgaaatatagccgttagttacttgatcaaatatgttagctcccgataagaatagcacggtgaggaaaattaattgcata |
310 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11589248 |
ttttgtccccacctggacgtctgaaatatagccgtcagttacttgatcaaatatgttagctcccgataagaatagcacgttgaggaaaattaattgcata |
11589149 |
T |
|
| Q |
311 |
aaattatttgtcaataaagtgacagtccactggtaattggtttggaatgaccattactaagtcaaagctaagattttgtttgtttgagaaacgttactgg |
410 |
Q |
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| T |
11589148 |
acattatttgacaataaagtgacagtccactggtaattggtttggaatgaccattactaagtcaaagctaagattttgtttgtttgaaaaacgttactgg |
11589049 |
T |
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| Q |
411 |
tttaatccaatttccagcagttaccgacccatggaat |
447 |
Q |
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| T |
11589048 |
tttaatccaatttccagcagttaccgacccatggaat |
11589012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 44534170 - 44533943
Alignment:
| Q |
11 |
cacagaggcatcagctgggcctttgaaatagcctaaacatccttcaataagtcttctgtacccttgctctggagcaatcagatggggctgataaccatcg |
110 |
Q |
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||||||||| || ||||||||||||||||||| | | |||||||| |||||||| || || |||||||||||||||||||| || ||||| ||||| |
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| T |
44534170 |
cacagaggcttctgctgggcctttgaaatagctgatggacccttcaatgagtcttctataaccctgctctggagcaatcagatgaggttgatacccatca |
44534071 |
T |
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| Q |
111 |
gcttctgtaacgactctctggacattttttatggaaagatgacgatcaaaggggagctttttcaaagcagccggtaattgattgtcaaaaacaccataaa |
210 |
Q |
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||||| || || ||| | ||||||||||||| ||||||||| ||||||||||| || ||||| ||||||||||||||||| | |||||||| ||||| | |
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| T |
44534070 |
gcttcagtgacaactttttggacattttttaaggaaagatggcgatcaaagggaagtttttttaaagcagccggtaattggtgatcaaaaactccatata |
44533971 |
T |
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| Q |
211 |
ttttgtccccacctggacgtctgaaata |
238 |
Q |
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| ||||||||| |||||||||||||| |
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| T |
44533970 |
tacggtccccaccaggacgtctgaaata |
44533943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 446
Target Start/End: Complemental strand, 20514590 - 20514502
Alignment:
| Q |
358 |
tgaccattactaagtcaaagctaagattttgtttgtttgagaaacgttactggtttaatccaatttccagcagttaccgacccatggaa |
446 |
Q |
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|||| ||||||||||| |||||||||||||||| ||||||||||||| || |||||||||||| | |||||| ||||||||||| |
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| T |
20514590 |
tgactattactaagtcttggctaagattttgtttgcatgagaaacgttacatgtgaaatccaatttcccgtagttactgacccatggaa |
20514502 |
T |
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