View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12382_low_6 (Length: 389)
Name: NF12382_low_6
Description: NF12382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12382_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 52708072 - 52708200
Alignment:
| Q |
4 |
gaggaggagcagagaaagagatagaagaatcagtagtaagcgtattagaagaagctaaagagattcaggattcagtttccgttcacatctcaaaaacatt |
103 |
Q |
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| T |
52708072 |
gaggaggagaagagaaagagatagaagaatcagtagtaagcgtattagaagaagctaaagagattcaggattcagtttccgttcacatctcaaaaacatt |
52708171 |
T |
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| Q |
104 |
aagcgatgaacaaccacttcgtcagcgtg |
132 |
Q |
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| T |
52708172 |
aagcgatgaacaaccacttcgtcagcgtg |
52708200 |
T |
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Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 192 - 389
Target Start/End: Original strand, 52708260 - 52708443
Alignment:
| Q |
192 |
aataaactcattcaaccatccttagctgataaggtaccaggaacttcaattgtccattttcaatttcaatttctttaatggattggatccgtttatttat |
291 |
Q |
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| T |
52708260 |
aataaactcattcaaccatccttagctgataaggtaccaggaacttcaatt--------tcaatttcaatttctttaatgtattggatccgtttatttat |
52708351 |
T |
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| Q |
292 |
t-attactaacgcatctcatcgcatcgcagttagatgaagatttgcaaagagccagatgcatcattgttgatggcgatgcttcttacctccttcctgga |
389 |
Q |
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| T |
52708352 |
ttattatta------ct-atcgcatcgcagttagatgaagatttgcaaagagccagatgcatcatcgttgatggcgatgcttcttacctccttcctgga |
52708443 |
T |
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