View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12382_low_8 (Length: 377)
Name: NF12382_low_8
Description: NF12382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12382_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 23179164 - 23179509
Alignment:
| Q |
18 |
gttgaatagattgatcataaccacattcttcatatattagtctattccctaattgacttgcaacatatccttttggatatggcattgatggatattcctt |
117 |
Q |
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| T |
23179164 |
gttgaatagattgatcataaccacattcttcatatattagtctattccctaattgacttgcaacatatccttttggatatggcattgatggatattcctt |
23179263 |
T |
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| Q |
118 |
caaacttcttctgtttgtttgcagatgtttctcaatctcgagcaaagataaattttgtatctcttcagaagtaagttgcaagtctaaatataagataaac |
217 |
Q |
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|||||||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23179264 |
caaacttcttctatttgtttgcaaatgtttctcaatctcaagcaaagataaactttgtatctcttcagaagtaagttgcaagtctaaatataagataaac |
23179363 |
T |
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| Q |
218 |
ccatattcaataagtattggttatcaagtacataaattgtttgatctatgaaataaggttaccgaatcataccttgattagctgtcaattttctctgatc |
317 |
Q |
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|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23179364 |
ccttattcaataagtattggttatgaagtacataaattgtttgatctatgaaataaggttaccgaaccataccttgattagctgtcaattttctctgatc |
23179463 |
T |
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| Q |
318 |
ataaagtatcccatcagacaacaatttccaagtttgattccacaca |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23179464 |
ataaagtatcccatcagacaacaatttccaagtttgattccacaca |
23179509 |
T |
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