View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12383_high_1 (Length: 396)
Name: NF12383_high_1
Description: NF12383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12383_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 323183 - 323549
Alignment:
| Q |
10 |
cagagaggcagtgtcatttgatcaaaatcataattgcagatgatatgtnnnnnnnnnnnnnnnnngtaagaacagttgtctaaaacattttaactgttgt |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
323183 |
cagagaggcagtgtcatttgatcaaaatcataattgcagatgatatgtaccaccaccaccaccacgtaagaacagttgtctaaaacattttaactgttgt |
323282 |
T |
|
| Q |
110 |
gatagaatcatcccccagcttagttttagatgactataatcctttatctgtatgcctttcgattttcatgcccttttgttttgagcttttcataccatat |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
323283 |
gatagaatcatcccccagcttagttttagatgactataatcctttatctgtatgcctttcgattttcatgcccttttgttttgagcttttcataccatat |
323382 |
T |
|
| Q |
210 |
tttctgtaggccttatctgtaattagcaatgagtgttaaaattacagttttaagtaaagtatagttaatgttattggaatacttgctgtttaacttggat |
309 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
323383 |
tttctgtaggccttatctgtaattagcaatgagttttaaaattacagttttaagtaaagtatagttaatgttattggaatacttgctgtttaacttggat |
323482 |
T |
|
| Q |
310 |
gatgttgctggagagtttgtgagtgattatgggtaggtgtggaggtaatatagttggccaattgccc |
376 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
323483 |
gatgctgctggagagtttgtgagtgattatgggtaggtgtggaggtaatatagttggctaattgccc |
323549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 291
Target Start/End: Original strand, 204462 - 204743
Alignment:
| Q |
10 |
cagagaggcagtgtcatttgatcaaaatcataattgcagatgatatgtnnnnnnnnnnnnnnnnngtaagaacagttgtctaaaacattttaactgttgt |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
204462 |
cagagaggcagtgtcatttgatcaaaatcataattgcagatgatatgtaccaccaccaccaccacgtaagaacagttgtctaaaacattttaactgttgt |
204561 |
T |
|
| Q |
110 |
gatagaatcatcccccagcttagttttagatgactataatcctttatctgtatgcctttcgattttcatgcccttttgttttgagcttttcataccatat |
209 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
204562 |
gatagaatcatcccccagcttagttttagatgactataatcctttatctgtatgcctttcgattttcatgcccttttgttttgagcttttcataccatat |
204661 |
T |
|
| Q |
210 |
tttctgtaggccttatctgtaattagcaatgagtgttaaaattacagttttaagtaaagtatagttaatgttattggaatac |
291 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
204662 |
tttctgtaggccttatctgtaattagcaatgagttttaaaattacagttttaagtaaagtatagttaatgttattggaatac |
204743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 291
Target Start/End: Original strand, 319299 - 319580
Alignment:
| Q |
10 |
cagagaggcagtgtcatttgatcaaaatcataattgcagatgatatgtnnnnnnnnnnnnnnnnngtaagaacagttgtctaaaacattttaactgttgt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
319299 |
cagagaggcagtgtcatttgatcaaaatcataattgcagatgatatgtaccaccaccaccaccacgtaagaacagttgtctaaaacattttaactgttgt |
319398 |
T |
|
| Q |
110 |
gatagaatcatcccccagcttagttttagatgactataatcctttatctgtatgcctttcgattttcatgcccttttgttttgagcttttcataccatat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
319399 |
gatagaatcatcccccagcttagttttagatgactataatcctttatctgtatgcctttcgattttcatgcccttttgttttgagcttttcataccatat |
319498 |
T |
|
| Q |
210 |
tttctgtaggccttatctgtaattagcaatgagtgttaaaattacagttttaagtaaagtatagttaatgttattggaatac |
291 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
319499 |
tttctgtaggccttatctgtaattagcaatgagttttaaaattacagttttaagtaaagtatagttaatgttattggaatac |
319580 |
T |
|
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