View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12383_high_2 (Length: 350)
Name: NF12383_high_2
Description: NF12383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12383_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 34411423 - 34411102
Alignment:
| Q |
18 |
taacctcaaactacctagagtgaaggatgtgatggtcaatggtcatacagtgaaggtgaagttctgcgatacttgcttgctatatcgtccaccacgcgct |
117 |
Q |
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| T |
34411423 |
taacctcaaactacctagagtgaaggatgtgatggtcaatggtcatacagtgaaggtgaagttctgcgatacttgcttgctatatcgtccaccacgcgct |
34411324 |
T |
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| Q |
118 |
tctcattgctctatttgcaataactgtgttcaaaagtttgatcatcattgcccttgggttggtcaatgtattggatcagtaagttcgatcaacattgcta |
217 |
Q |
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| T |
34411323 |
tctcattgctctatttgcaataactgtgttcaaaagtttgatcatcattgcccttgggttggtcaatgtattggatcagtaagttcgatcaacattgcta |
34411224 |
T |
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| Q |
218 |
tgtctgcgtttttcggatatgtttacttttgaaccaggtttgctgatctaagaaaatctaacacagttcctcctcctatcatgtttctttcagcgaaact |
317 |
Q |
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| T |
34411223 |
tgtctgcgtttttcgtatatgtttacttttgaaccaggtttgctgatctaagaaaatctaacacagttcctcctcctatcatgtttctttcagcgaaact |
34411124 |
T |
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| Q |
318 |
atccattcttcataatgttcat |
339 |
Q |
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| T |
34411123 |
atccattcttcataatgttcat |
34411102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 179
Target Start/End: Complemental strand, 34401556 - 34401432
Alignment:
| Q |
55 |
aatggtcatacagtgaaggtgaagttctgcgatacttgcttgctatatcgtccaccacgcgcttctcattgctctatttgcaataactgtgttcaaaagt |
154 |
Q |
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| T |
34401556 |
aatggtcatacggtgaaagtgaagttctgtgatacatgcttgctatatcgaccgcctcgtacttctcattgttctatatgcaacaactgtgtccagagat |
34401457 |
T |
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| Q |
155 |
ttgatcatcattgcccttgggttgg |
179 |
Q |
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| T |
34401456 |
ttgatcatcactgcccctgggttgg |
34401432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 13589556 - 13589485
Alignment:
| Q |
121 |
cattgctctatttgcaataactgtgttcaaaagtttgatcatcattgcccttgggttggtcaatgtattgga |
192 |
Q |
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|||||||| |||||||| || |||||| || |||||||||||||||||||||||||| ||||| |||||| |
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| T |
13589556 |
cattgctccatttgcaacaattgtgttgaacgttttgatcatcattgcccttgggttggccaatgcattgga |
13589485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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